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MS012813 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS012813
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Description30S ribosomal protein S2, chloroplastic
Genome locationscaffold63:3658192..3658434
RNA-Seq ExpressionMS012813
SyntenyMS012813
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0009507 - chloroplast (cellular component)
GO:0015935 - small ribosomal subunit (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsIPR001865 - Ribosomal protein S2
IPR023591 - Ribosomal protein S2, flavodoxin-like domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
AHM88761.1 ribosomal protein S2, partial [Lagenaria siceraria]6.2e-1969.14Show/hide
Query:  LILTNKNRAADSVARAVTRILCYYVNKK-SSGMLTNCSTTETRLHKFKDSRTKEK-GGLNRFPKVDVSILKRQLSHLHIYV
        LI+  KN+AADSVARA TR  C+YVNKK   GMLTN STTETRLHKF+D RT++K GGLNR PK D ++LKRQLSHL  Y+
Subjt:  LILTNKNRAADSVARAVTRILCYYVNKK-SSGMLTNCSTTETRLHKFKDSRTKEK-GGLNRFPKVDVSILKRQLSHLHIYV
QJS52344.1 ribosomal protein S2 [Indofevillea khasiana]6.2e-1969.14Show/hide
Query:  LILTNKNRAADSVARAVTRILCYYVNKK-SSGMLTNCSTTETRLHKFKDSRTKEK-GGLNRFPKVDVSILKRQLSHLHIYV
        LI+  KN+AADSVARA TR  C+YVNKK   GMLTN STTETRLHKF+D RT++K GGLNR PK D ++LKRQLSHL  Y+
Subjt:  LILTNKNRAADSVARAVTRILCYYVNKK-SSGMLTNCSTTETRLHKFKDSRTKEK-GGLNRFPKVDVSILKRQLSHLHIYV
YP_009430616.1 ribosomal protein S2 [Gynostemma cardiospermum]3.6e-1969.14Show/hide
Query:  LILTNKNRAADSVARAVTRILCYYVNKK-SSGMLTNCSTTETRLHKFKDSRTKEK-GGLNRFPKVDVSILKRQLSHLHIYV
        LI+  KN+AADSVARA TR  C+YVNKK   GMLTN STTETRLHKF+D RT++K GGLNR PK D ++LKRQLSHL  Y+
Subjt:  LILTNKNRAADSVARAVTRILCYYVNKK-SSGMLTNCSTTETRLHKFKDSRTKEK-GGLNRFPKVDVSILKRQLSHLHIYV
YP_009439880.1 ribosomal protein S2 [Gynostemma caulopterum]6.2e-1969.14Show/hide
Query:  LILTNKNRAADSVARAVTRILCYYVNKK-SSGMLTNCSTTETRLHKFKDSRTKEK-GGLNRFPKVDVSILKRQLSHLHIYV
        LI+  KN+AADSVARA TR  C+YVNKK   GMLTN STTETRLHKF+D RT++K GGLNR PK D ++LKRQLSHL  Y+
Subjt:  LILTNKNRAADSVARAVTRILCYYVNKK-SSGMLTNCSTTETRLHKFKDSRTKEK-GGLNRFPKVDVSILKRQLSHLHIYV
YP_010119723.1 ribosomal protein S2 [Hemsleya zhejiangensis]6.2e-1969.14Show/hide
Query:  LILTNKNRAADSVARAVTRILCYYVNKK-SSGMLTNCSTTETRLHKFKDSRTKEK-GGLNRFPKVDVSILKRQLSHLHIYV
        LI+  KN+AADSVARA TR  C+YVNKK   GMLTN STTETRLHKF+D RT++K GGLNR PK D ++LKRQLSHL  Y+
Subjt:  LILTNKNRAADSVARAVTRILCYYVNKK-SSGMLTNCSTTETRLHKFKDSRTKEK-GGLNRFPKVDVSILKRQLSHLHIYV
TrEMBL top hitse value%identityAlignment
A0A1P8LE54 Ribosomal protein S23.0e-1969.14Show/hide
Query:  LILTNKNRAADSVARAVTRILCYYVNKK-SSGMLTNCSTTETRLHKFKDSRTKEK-GGLNRFPKVDVSILKRQLSHLHIYV
        LI+  KN+AADSVARA TR  C+YVNKK   GMLTN STTETRLHKF+D RT++K GGLNR PK D ++LKRQLSHL  Y+
Subjt:  LILTNKNRAADSVARAVTRILCYYVNKK-SSGMLTNCSTTETRLHKFKDSRTKEK-GGLNRFPKVDVSILKRQLSHLHIYV
A0A249RZA5 30S ribosomal protein S2, chloroplastic3.0e-1969.14Show/hide
Query:  LILTNKNRAADSVARAVTRILCYYVNKK-SSGMLTNCSTTETRLHKFKDSRTKEK-GGLNRFPKVDVSILKRQLSHLHIYV
        LI+  KN+AADSVARA TR  C+YVNKK   GMLTN STTETRLHKF+D RT++K GGLNR PK D ++LKRQLSHL  Y+
Subjt:  LILTNKNRAADSVARAVTRILCYYVNKK-SSGMLTNCSTTETRLHKFKDSRTKEK-GGLNRFPKVDVSILKRQLSHLHIYV
A0A286KU01 30S ribosomal protein S2, chloroplastic1.8e-1969.14Show/hide
Query:  LILTNKNRAADSVARAVTRILCYYVNKK-SSGMLTNCSTTETRLHKFKDSRTKEK-GGLNRFPKVDVSILKRQLSHLHIYV
        LI+  KN+AADSVARA TR  C+YVNKK   GMLTN STTETRLHKF+D RT++K GGLNR PK D ++LKRQLSHL  Y+
Subjt:  LILTNKNRAADSVARAVTRILCYYVNKK-SSGMLTNCSTTETRLHKFKDSRTKEK-GGLNRFPKVDVSILKRQLSHLHIYV
A0A2Z2CQF0 30S ribosomal protein S2, chloroplastic3.0e-1969.14Show/hide
Query:  LILTNKNRAADSVARAVTRILCYYVNKK-SSGMLTNCSTTETRLHKFKDSRTKEK-GGLNRFPKVDVSILKRQLSHLHIYV
        LI+  KN+AADSVARA TR  C+YVNKK   GMLTN STTETRLHKF+D RT++K GGLNR PK D ++LKRQLSHL  Y+
Subjt:  LILTNKNRAADSVARAVTRILCYYVNKK-SSGMLTNCSTTETRLHKFKDSRTKEK-GGLNRFPKVDVSILKRQLSHLHIYV
X2F5D2 30S ribosomal protein S2, chloroplastic3.0e-1969.14Show/hide
Query:  LILTNKNRAADSVARAVTRILCYYVNKK-SSGMLTNCSTTETRLHKFKDSRTKEK-GGLNRFPKVDVSILKRQLSHLHIYV
        LI+  KN+AADSVARA TR  C+YVNKK   GMLTN STTETRLHKF+D RT++K GGLNR PK D ++LKRQLSHL  Y+
Subjt:  LILTNKNRAADSVARAVTRILCYYVNKK-SSGMLTNCSTTETRLHKFKDSRTKEK-GGLNRFPKVDVSILKRQLSHLHIYV
SwissProt top hitse value%identityAlignment
A0ZZ24 30S ribosomal protein S2, chloroplastic1.3e-1965.43Show/hide
Query:  LILTNKNRAADSVARAVTRILCYYVNKK-SSGMLTNCSTTETRLHKFKDSRTKEK-GGLNRFPKVDVSILKRQLSHLHIYV
        LI+  KN+AADSVARA  R  C+YVNKK   GMLTN  TTETRLHKF+D RT++K GGLNR PK D ++LKRQLS L  Y+
Subjt:  LILTNKNRAADSVARAVTRILCYYVNKK-SSGMLTNCSTTETRLHKFKDSRTKEK-GGLNRFPKVDVSILKRQLSHLHIYV
B1A924 30S ribosomal protein S2, chloroplastic2.0e-2066.67Show/hide
Query:  LILTNKNRAADSVARAVTRILCYYVNKK-SSGMLTNCSTTETRLHKFKDSRTKEK-GGLNRFPKVDVSILKRQLSHLHIYV
        LI+  KN+AADSVARA  R  C+YVNKK   GMLTN STTETRLHKF+D RT++K G LNR PK D ++LKRQLSHL  Y+
Subjt:  LILTNKNRAADSVARAVTRILCYYVNKK-SSGMLTNCSTTETRLHKFKDSRTKEK-GGLNRFPKVDVSILKRQLSHLHIYV
Q2L8Z6 30S ribosomal protein S2, chloroplastic1.3e-1965.43Show/hide
Query:  LILTNKNRAADSVARAVTRILCYYVNKK-SSGMLTNCSTTETRLHKFKDSRTKEK-GGLNRFPKVDVSILKRQLSHLHIYV
        LI+  KN+AADSVARA  R  C+YVNKK   GMLTN  TTETRLHKF+D RT++K GGLNR PK D ++LKRQLS L  Y+
Subjt:  LILTNKNRAADSVARAVTRILCYYVNKK-SSGMLTNCSTTETRLHKFKDSRTKEK-GGLNRFPKVDVSILKRQLSHLHIYV
Q49L09 30S ribosomal protein S2, chloroplastic2.0e-2066.67Show/hide
Query:  LILTNKNRAADSVARAVTRILCYYVNKK-SSGMLTNCSTTETRLHKFKDSRTKEKGG-LNRFPKVDVSILKRQLSHLHIYV
        LI+  KN+AADSVARA  R  C+YVNKK   GMLTN STTETRLHKF+D RT++K G LNR PK D ++LKRQLSHL  Y+
Subjt:  LILTNKNRAADSVARAVTRILCYYVNKK-SSGMLTNCSTTETRLHKFKDSRTKEKGG-LNRFPKVDVSILKRQLSHLHIYV
Q4VZP4 30S ribosomal protein S2, chloroplastic2.4e-2167.9Show/hide
Query:  LILTNKNRAADSVARAVTRILCYYVNKK-SSGMLTNCSTTETRLHKFKDSRTKEK-GGLNRFPKVDVSILKRQLSHLHIYV
        LI+  KN+AADSVARA TR  C+YVNKK   GMLTN STTETRLHKF+D RT++K GGLNR PK D ++ KRQLSHL  Y+
Subjt:  LILTNKNRAADSVARAVTRILCYYVNKK-SSGMLTNCSTTETRLHKFKDSRTKEK-GGLNRFPKVDVSILKRQLSHLHIYV
Arabidopsis top hitse value%identityAlignment
ATCG00160.1 ribosomal protein S21.9e-1860.49Show/hide
Query:  LILTNKNRAADSVARAVTRILCYYVNKK-SSGMLTNCSTTETRLHKFKDSRTKEK-GGLNRFPKVDVSILKRQLSHLHIYV
        LI+  KN+AAD V+RA  R  C+YVNKK   GMLTN STTE RLHKF+D RT++K  G NR PK D ++LKRQLS L  Y+
Subjt:  LILTNKNRAADSVARAVTRILCYYVNKK-SSGMLTNCSTTETRLHKFKDSRTKEK-GGLNRFPKVDVSILKRQLSHLHIYV

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
CTACTTATCTTGACAAACAAAAATAGAGCAGCGGATTCAGTAGCTCGGGCTGTAACAAGAATTCTGTGTTATTATGTTAATAAAAAAAGCTCAGGGATGTTAACAAATTG
CTCTACTACAGAAACAAGACTTCATAAGTTCAAGGACTCAAGAACGAAAGAAAAGGGGGGACTCAACCGTTTTCCGAAAGTAGATGTCTCTATTTTGAAGAGACAATTAT
CTCACTTGCATATATACGTA
mRNA sequenceShow/hide mRNA sequence
CTACTTATCTTGACAAACAAAAATAGAGCAGCGGATTCAGTAGCTCGGGCTGTAACAAGAATTCTGTGTTATTATGTTAATAAAAAAAGCTCAGGGATGTTAACAAATTG
CTCTACTACAGAAACAAGACTTCATAAGTTCAAGGACTCAAGAACGAAAGAAAAGGGGGGACTCAACCGTTTTCCGAAAGTAGATGTCTCTATTTTGAAGAGACAATTAT
CTCACTTGCATATATACGTA
Protein sequenceShow/hide protein sequence
LLILTNKNRAADSVARAVTRILCYYVNKKSSGMLTNCSTTETRLHKFKDSRTKEKGGLNRFPKVDVSILKRQLSHLHIYV