; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MS012879 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS012879
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Descriptiontranscription initiation factor TFIID subunit 11
Genome locationscaffold38:51113..54406
RNA-Seq ExpressionMS012879
SyntenyMS012879
Gene Ontology termsGO:0006413 - translational initiation (biological process)
GO:0045893 - positive regulation of transcription, DNA-templated (biological process)
GO:0051123 - RNA polymerase II preinitiation complex assembly (biological process)
GO:0005669 - transcription factor TFIID complex (cellular component)
GO:0003713 - transcription coactivator activity (molecular function)
GO:0003743 - translation initiation factor activity (molecular function)
GO:0046982 - protein heterodimerization activity (molecular function)
InterPro domainsIPR006809 - TAFII28-like protein domain
IPR009072 - Histone-fold
IPR045127 - Transcription initiation factor TFIID subunit 11-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7028341.1 Transcription initiation factor TFIID subunit 11 [Cucurbita argyrosperma subsp. argyrosperma]6.4e-9890.75Show/hide
Query:  MKQSKDPFEAAFEEQEESPPNSPSAADVVEIQTNVAA---SDALDSHDGDDDPKAATAAAAAVATHSGIPSAPTTSMFVSSSSNVSAAPKTKDDDEEEEE
        MKQSKDPFEAAFEEQEESPPNSPSAAD +EIQTNVAA   +DALD HDGDD+PK    +AAA AT+SGIPSA TTS+FVSSSSNVSAAPKTK+DD+EEEE
Subjt:  MKQSKDPFEAAFEEQEESPPNSPSAADVVEIQTNVAA---SDALDSHDGDDDPKAATAAAAAVATHSGIPSAPTTSMFVSSSSNVSAAPKTKDDDEEEEE

Query:  ENVEVELAKFPSSGDPDKMAKMQAILSQFTEEQMSRYESFRRAGFQKANMKRLLASISGTQKISVPMTIVVSGIAKMFVGELVETARVVMTERNDTGPIR
        ENVEVELAKFPSSGDPDKMAKMQAILSQFTEEQMSRYESFRRAGFQKANMKRLLASISGTQKISVPMTIVVSGIAKMFVGELVETARVVMTERND+G IR
Subjt:  ENVEVELAKFPSSGDPDKMAKMQAILSQFTEEQMSRYESFRRAGFQKANMKRLLASISGTQKISVPMTIVVSGIAKMFVGELVETARVVMTERNDTGPIR

Query:  PCHLREAYRRLKLEGKIPRKSVPRLFR
        PCHLREAYRRLKLEGKIPRKSVPRLFR
Subjt:  PCHLREAYRRLKLEGKIPRKSVPRLFR

XP_022152728.1 transcription initiation factor TFIID subunit 11 [Momordica charantia]1.1e-110100Show/hide
Query:  MKQSKDPFEAAFEEQEESPPNSPSAADVVEIQTNVAASDALDSHDGDDDPKAATAAAAAVATHSGIPSAPTTSMFVSSSSNVSAAPKTKDDDEEEEEENV
        MKQSKDPFEAAFEEQEESPPNSPSAADVVEIQTNVAASDALDSHDGDDDPKAATAAAAAVATHSGIPSAPTTSMFVSSSSNVSAAPKTKDDDEEEEEENV
Subjt:  MKQSKDPFEAAFEEQEESPPNSPSAADVVEIQTNVAASDALDSHDGDDDPKAATAAAAAVATHSGIPSAPTTSMFVSSSSNVSAAPKTKDDDEEEEEENV

Query:  EVELAKFPSSGDPDKMAKMQAILSQFTEEQMSRYESFRRAGFQKANMKRLLASISGTQKISVPMTIVVSGIAKMFVGELVETARVVMTERNDTGPIRPCH
        EVELAKFPSSGDPDKMAKMQAILSQFTEEQMSRYESFRRAGFQKANMKRLLASISGTQKISVPMTIVVSGIAKMFVGELVETARVVMTERNDTGPIRPCH
Subjt:  EVELAKFPSSGDPDKMAKMQAILSQFTEEQMSRYESFRRAGFQKANMKRLLASISGTQKISVPMTIVVSGIAKMFVGELVETARVVMTERNDTGPIRPCH

Query:  LREAYRRLKLEGKIPRKSVPRLFR
        LREAYRRLKLEGKIPRKSVPRLFR
Subjt:  LREAYRRLKLEGKIPRKSVPRLFR

XP_022940909.1 transcription initiation factor TFIID subunit 11 [Cucurbita moschata]6.4e-9890.75Show/hide
Query:  MKQSKDPFEAAFEEQEESPPNSPSAADVVEIQTNVAA---SDALDSHDGDDDPKAATAAAAAVATHSGIPSAPTTSMFVSSSSNVSAAPKTKDDDEEEEE
        MKQSKDPFEAAFEEQEESPPNSPSAAD +EIQTNVAA   +DALD HDGDD+PK    +AAA AT+SGIPSA TTS+FVSSSSNVSAAPKTK+DD+EEEE
Subjt:  MKQSKDPFEAAFEEQEESPPNSPSAADVVEIQTNVAA---SDALDSHDGDDDPKAATAAAAAVATHSGIPSAPTTSMFVSSSSNVSAAPKTKDDDEEEEE

Query:  ENVEVELAKFPSSGDPDKMAKMQAILSQFTEEQMSRYESFRRAGFQKANMKRLLASISGTQKISVPMTIVVSGIAKMFVGELVETARVVMTERNDTGPIR
        ENVEVELAKFPSSGDPDKMAKMQAILSQFTEEQMSRYESFRRAGFQKANMKRLLASISGTQKISVPMTIVVSGIAKMFVGELVETARVVMTERND+G IR
Subjt:  ENVEVELAKFPSSGDPDKMAKMQAILSQFTEEQMSRYESFRRAGFQKANMKRLLASISGTQKISVPMTIVVSGIAKMFVGELVETARVVMTERNDTGPIR

Query:  PCHLREAYRRLKLEGKIPRKSVPRLFR
        PCHLREAYRRLKLEGKIPRKSVPRLFR
Subjt:  PCHLREAYRRLKLEGKIPRKSVPRLFR

XP_023005534.1 transcription initiation factor TFIID subunit 11 [Cucurbita maxima]2.9e-9890.31Show/hide
Query:  MKQSKDPFEAAFEEQEESPPNSPSAADVVEIQTNVAA---SDALDSHDGDDDPKAATAAAAAVATHSGIPSAPTTSMFVSSSSNVSAAPKTKDDDEEEEE
        MKQSKDPFEAAFEEQEESPPNSPSAAD +EIQTNVAA   +DA+D HDGDDDPK    AAAA AT+SG+PSA TTS+FVSSSSN+SAAPKTK+DD+EEEE
Subjt:  MKQSKDPFEAAFEEQEESPPNSPSAADVVEIQTNVAA---SDALDSHDGDDDPKAATAAAAAVATHSGIPSAPTTSMFVSSSSNVSAAPKTKDDDEEEEE

Query:  ENVEVELAKFPSSGDPDKMAKMQAILSQFTEEQMSRYESFRRAGFQKANMKRLLASISGTQKISVPMTIVVSGIAKMFVGELVETARVVMTERNDTGPIR
        ENVEVELAKFPSSGDPDKMAKMQAILSQFTEEQMSRYESFRRAGFQKANMKRLLASISGTQKISVPMTIVVSGIAKMFVGELVETARVVMTERND+G IR
Subjt:  ENVEVELAKFPSSGDPDKMAKMQAILSQFTEEQMSRYESFRRAGFQKANMKRLLASISGTQKISVPMTIVVSGIAKMFVGELVETARVVMTERNDTGPIR

Query:  PCHLREAYRRLKLEGKIPRKSVPRLFR
        PCHLREAYRRLKLEGKIPRKSVPRLFR
Subjt:  PCHLREAYRRLKLEGKIPRKSVPRLFR

XP_023538856.1 transcription initiation factor TFIID subunit 11 [Cucurbita pepo subsp. pepo]5.8e-9991.63Show/hide
Query:  MKQSKDPFEAAFEEQEESPPNSPSAADVVEIQTNVAA---SDALDSHDGDDDPKAATAAAAAVATHSGIPSAPTTSMFVSSSSNVSAAPKTKDDDEEEEE
        MKQSKDPFEAAFEEQEESPPNSPSAAD +EIQTNVAA   +DALD HDGDD+PK  +AAAAA AT+SGIPSA TTS+FVSSSSNVSAAPKTK+DD+EEEE
Subjt:  MKQSKDPFEAAFEEQEESPPNSPSAADVVEIQTNVAA---SDALDSHDGDDDPKAATAAAAAVATHSGIPSAPTTSMFVSSSSNVSAAPKTKDDDEEEEE

Query:  ENVEVELAKFPSSGDPDKMAKMQAILSQFTEEQMSRYESFRRAGFQKANMKRLLASISGTQKISVPMTIVVSGIAKMFVGELVETARVVMTERNDTGPIR
        ENVEVELAKFPSSGDPDKMAKMQAILSQFTEEQMSRYESFRRAGFQKANMKRLLASISGTQKISVPMTIVVSGIAKMFVGELVETARVVMTERND+G IR
Subjt:  ENVEVELAKFPSSGDPDKMAKMQAILSQFTEEQMSRYESFRRAGFQKANMKRLLASISGTQKISVPMTIVVSGIAKMFVGELVETARVVMTERNDTGPIR

Query:  PCHLREAYRRLKLEGKIPRKSVPRLFR
        PCHLREAYRRLKLEGKIPRKSVPRLFR
Subjt:  PCHLREAYRRLKLEGKIPRKSVPRLFR

TrEMBL top hitse value%identityAlignment
A0A0A0L5S4 TAFII28 domain-containing protein6.1e-9489.38Show/hide
Query:  MKQSKDPFEAAFEEQEESPPNSPSAADVVEIQTNVAAS--DALDSHDGDDDPKAATAAAAAVATHSGIPSAPTTSMFVSSSSNVSAAPKTKDDDEEEEEE
        MKQSKDPFEAAFEEQEESPPNSPSAAD +EI T VA S  DA D  DGDDDPK     +A+VATHS  P A TTSMFVSSSS+VS APKTK+DDEEEEEE
Subjt:  MKQSKDPFEAAFEEQEESPPNSPSAADVVEIQTNVAAS--DALDSHDGDDDPKAATAAAAAVATHSGIPSAPTTSMFVSSSSNVSAAPKTKDDDEEEEEE

Query:  NVEVELAKFPSSGDPDKMAKMQAILSQFTEEQMSRYESFRRAGFQKANMKRLLASISGTQKISVPMTIVVSGIAKMFVGELVETARVVMTERNDTGPIRP
        NVEVELAKFPSSGDPDKMAKMQAILSQFTEEQMSRYESFRRAGFQKANMKRLLASISGTQKISVPMTIVVSGIAKMFVGELVETARVVMTERNDTGPIRP
Subjt:  NVEVELAKFPSSGDPDKMAKMQAILSQFTEEQMSRYESFRRAGFQKANMKRLLASISGTQKISVPMTIVVSGIAKMFVGELVETARVVMTERNDTGPIRP

Query:  CHLREAYRRLKLEGKIPRKSVPRLFR
        CHLREAYRRLKLEGKIPRKSVPRLFR
Subjt:  CHLREAYRRLKLEGKIPRKSVPRLFR

A0A5D3D798 Transcription initiation factor TFIID subunit 113.9e-9388.5Show/hide
Query:  MKQSKDPFEAAFEEQEESPPNSPSAADVVEIQTNVA--ASDALDSHDGDDDPKAATAAAAAVATHSGIPSAPTTSMFVSSSSNVSAAPKTKDDDEEEEEE
        MKQSKDPFEAAFEEQEESPPNSPSAAD +EI T VA   +DA D  DGDDDPK     +A+VATHS  P   TTSMFVSSSS+VSAAPKTK+DDEEEEEE
Subjt:  MKQSKDPFEAAFEEQEESPPNSPSAADVVEIQTNVA--ASDALDSHDGDDDPKAATAAAAAVATHSGIPSAPTTSMFVSSSSNVSAAPKTKDDDEEEEEE

Query:  NVEVELAKFPSSGDPDKMAKMQAILSQFTEEQMSRYESFRRAGFQKANMKRLLASISGTQKISVPMTIVVSGIAKMFVGELVETARVVMTERNDTGPIRP
        NVEVELAKFPSSGDPDKMAKMQAILSQFTEEQMSRYESFRRAGFQKANMKRLLASISGTQKISVPMTIVVSGIAKMFVGELVETARVVMTERND+GPIRP
Subjt:  NVEVELAKFPSSGDPDKMAKMQAILSQFTEEQMSRYESFRRAGFQKANMKRLLASISGTQKISVPMTIVVSGIAKMFVGELVETARVVMTERNDTGPIRP

Query:  CHLREAYRRLKLEGKIPRKSVPRLFR
        CHLREAYRRLKLEGKIPRKSVPRLFR
Subjt:  CHLREAYRRLKLEGKIPRKSVPRLFR

A0A6J1DFN0 transcription initiation factor TFIID subunit 115.5e-111100Show/hide
Query:  MKQSKDPFEAAFEEQEESPPNSPSAADVVEIQTNVAASDALDSHDGDDDPKAATAAAAAVATHSGIPSAPTTSMFVSSSSNVSAAPKTKDDDEEEEEENV
        MKQSKDPFEAAFEEQEESPPNSPSAADVVEIQTNVAASDALDSHDGDDDPKAATAAAAAVATHSGIPSAPTTSMFVSSSSNVSAAPKTKDDDEEEEEENV
Subjt:  MKQSKDPFEAAFEEQEESPPNSPSAADVVEIQTNVAASDALDSHDGDDDPKAATAAAAAVATHSGIPSAPTTSMFVSSSSNVSAAPKTKDDDEEEEEENV

Query:  EVELAKFPSSGDPDKMAKMQAILSQFTEEQMSRYESFRRAGFQKANMKRLLASISGTQKISVPMTIVVSGIAKMFVGELVETARVVMTERNDTGPIRPCH
        EVELAKFPSSGDPDKMAKMQAILSQFTEEQMSRYESFRRAGFQKANMKRLLASISGTQKISVPMTIVVSGIAKMFVGELVETARVVMTERNDTGPIRPCH
Subjt:  EVELAKFPSSGDPDKMAKMQAILSQFTEEQMSRYESFRRAGFQKANMKRLLASISGTQKISVPMTIVVSGIAKMFVGELVETARVVMTERNDTGPIRPCH

Query:  LREAYRRLKLEGKIPRKSVPRLFR
        LREAYRRLKLEGKIPRKSVPRLFR
Subjt:  LREAYRRLKLEGKIPRKSVPRLFR

A0A6J1FLN4 transcription initiation factor TFIID subunit 113.1e-9890.75Show/hide
Query:  MKQSKDPFEAAFEEQEESPPNSPSAADVVEIQTNVAA---SDALDSHDGDDDPKAATAAAAAVATHSGIPSAPTTSMFVSSSSNVSAAPKTKDDDEEEEE
        MKQSKDPFEAAFEEQEESPPNSPSAAD +EIQTNVAA   +DALD HDGDD+PK    +AAA AT+SGIPSA TTS+FVSSSSNVSAAPKTK+DD+EEEE
Subjt:  MKQSKDPFEAAFEEQEESPPNSPSAADVVEIQTNVAA---SDALDSHDGDDDPKAATAAAAAVATHSGIPSAPTTSMFVSSSSNVSAAPKTKDDDEEEEE

Query:  ENVEVELAKFPSSGDPDKMAKMQAILSQFTEEQMSRYESFRRAGFQKANMKRLLASISGTQKISVPMTIVVSGIAKMFVGELVETARVVMTERNDTGPIR
        ENVEVELAKFPSSGDPDKMAKMQAILSQFTEEQMSRYESFRRAGFQKANMKRLLASISGTQKISVPMTIVVSGIAKMFVGELVETARVVMTERND+G IR
Subjt:  ENVEVELAKFPSSGDPDKMAKMQAILSQFTEEQMSRYESFRRAGFQKANMKRLLASISGTQKISVPMTIVVSGIAKMFVGELVETARVVMTERNDTGPIR

Query:  PCHLREAYRRLKLEGKIPRKSVPRLFR
        PCHLREAYRRLKLEGKIPRKSVPRLFR
Subjt:  PCHLREAYRRLKLEGKIPRKSVPRLFR

A0A6J1KZI1 transcription initiation factor TFIID subunit 111.4e-9890.31Show/hide
Query:  MKQSKDPFEAAFEEQEESPPNSPSAADVVEIQTNVAA---SDALDSHDGDDDPKAATAAAAAVATHSGIPSAPTTSMFVSSSSNVSAAPKTKDDDEEEEE
        MKQSKDPFEAAFEEQEESPPNSPSAAD +EIQTNVAA   +DA+D HDGDDDPK    AAAA AT+SG+PSA TTS+FVSSSSN+SAAPKTK+DD+EEEE
Subjt:  MKQSKDPFEAAFEEQEESPPNSPSAADVVEIQTNVAA---SDALDSHDGDDDPKAATAAAAAVATHSGIPSAPTTSMFVSSSSNVSAAPKTKDDDEEEEE

Query:  ENVEVELAKFPSSGDPDKMAKMQAILSQFTEEQMSRYESFRRAGFQKANMKRLLASISGTQKISVPMTIVVSGIAKMFVGELVETARVVMTERNDTGPIR
        ENVEVELAKFPSSGDPDKMAKMQAILSQFTEEQMSRYESFRRAGFQKANMKRLLASISGTQKISVPMTIVVSGIAKMFVGELVETARVVMTERND+G IR
Subjt:  ENVEVELAKFPSSGDPDKMAKMQAILSQFTEEQMSRYESFRRAGFQKANMKRLLASISGTQKISVPMTIVVSGIAKMFVGELVETARVVMTERNDTGPIR

Query:  PCHLREAYRRLKLEGKIPRKSVPRLFR
        PCHLREAYRRLKLEGKIPRKSVPRLFR
Subjt:  PCHLREAYRRLKLEGKIPRKSVPRLFR

SwissProt top hitse value%identityAlignment
F4HR03 Transcription initiation factor TFIID subunit 11b2.0e-3848Show/hide
Query:  MKQSKDPFEAAFEEQEESPPNSPSAADVVEIQTNVAASDALDSHDGDDDPKAATAAAAAVATHSGIPSAPTTSMFVSSSSNVSAAPKTKDDDEEEEEENV
        MK SKDPFEAA EEQEESP         VE +  +         +GD+                                   A  K K     E +   
Subjt:  MKQSKDPFEAAFEEQEESPPNSPSAADVVEIQTNVAASDALDSHDGDDDPKAATAAAAAVATHSGIPSAPTTSMFVSSSSNVSAAPKTKDDDEEEEEENV

Query:  EVELAKFPSSGDPDKMA-KMQAILSQFTEEQMSRYESFRRAGFQKANMKRLLASISGTQKISVPMTIVVSGIAKMFVGELVETARVVMTERNDTGPIRPC
        EVE  K  +  DP   A KMQ ILSQFTEEQMSRYESFRR+GF+K++M++L+  I+G  K+   M IVV GIAKMFVG+LVETARVVM ER ++GPIRPC
Subjt:  EVELAKFPSSGDPDKMA-KMQAILSQFTEEQMSRYESFRRAGFQKANMKRLLASISGTQKISVPMTIVVSGIAKMFVGELVETARVVMTERNDTGPIRPC

Query:  HLREAYRRLKLEGKIPRKSVPRLFR
        H+RE+YRRLKL+GK+P++SV RLFR
Subjt:  HLREAYRRLKLEGKIPRKSVPRLFR

Q15544 Transcription initiation factor TFIID subunit 111.8e-1838.16Show/hide
Query:  EAAFEEQEESPPNSPSAADVVEIQTNVAASDALDSHDGDDDPKAATAAAAAVATHSGIPSAPTTSMFVSSSSNVSAAPKTKDDDEEEEEENVEVELAKFP
        E    ++  + P  P A D   I          +  DGD D     AAA      S   S  TT     SS    AA K K D +E++E+  +V      
Subjt:  EAAFEEQEESPPNSPSAADVVEIQTNVAASDALDSHDGDDDPKAATAAAAAVATHSGIPSAPTTSMFVSSSSNVSAAPKTKDDDEEEEEENVEVELAKFP

Query:  SSGDPDKMAKMQAILSQFTEEQMSRYESFRRAGFQKANMKRLLASISGTQKISVPMTIVVSGIAKMFVGELVETARVVMTERNDTGPIRPCHLREAYRRL
           D D++ KMQ ++S F+EEQ++RYE +RR+ F KA +KRL+ SI+GT  +S  + I +SGI+K+FVGE+VE A  V  +  +  P++P H+REA RRL
Subjt:  SSGDPDKMAKMQAILSQFTEEQMSRYESFRRAGFQKANMKRLLASISGTQKISVPMTIVVSGIAKMFVGELVETARVVMTERNDTGPIRPCHLREAYRRL

Query:  KLEGKIP
        K +G+IP
Subjt:  KLEGKIP

Q5RA91 Transcription initiation factor TFIID subunit 118.1e-1938.16Show/hide
Query:  EAAFEEQEESPPNSPSAADVVEIQTNVAASDALDSHDGDDDPKAATAAAAAVATHSGIPSAPTTSMFVSSSSNVSAAPKTKDDDEEEEEENVEVELAKFP
        E    ++  + P  P A D   I          +  DGD D     AAA      S   S  TT     SS    AA K K D +E++E+  +V      
Subjt:  EAAFEEQEESPPNSPSAADVVEIQTNVAASDALDSHDGDDDPKAATAAAAAVATHSGIPSAPTTSMFVSSSSNVSAAPKTKDDDEEEEEENVEVELAKFP

Query:  SSGDPDKMAKMQAILSQFTEEQMSRYESFRRAGFQKANMKRLLASISGTQKISVPMTIVVSGIAKMFVGELVETARVVMTERNDTGPIRPCHLREAYRRL
           D D++ KMQ ++S F+EEQ++RYE +RR+ F KA +KRL+ SI+GT  +S  + I +SGI+K+FVGE+VE A  V  +  +  P++P H+REA RRL
Subjt:  SSGDPDKMAKMQAILSQFTEEQMSRYESFRRAGFQKANMKRLLASISGTQKISVPMTIVVSGIAKMFVGELVETARVVMTERNDTGPIRPCHLREAYRRL

Query:  KLEGKIP
        K +G+IP
Subjt:  KLEGKIP

Q99JX1 Transcription initiation factor TFIID subunit 111.4e-1837.68Show/hide
Query:  EAAFEEQEESPPNSPSAADVVEIQTNVAASDALDSHDGDDDPKAATAAAAAVATHSGIPSAPTTSMFVSSSSNVSAAPKTKDDDEEEEEENVEVELAKFP
        E    E+  + P +  AAD   I             DGD D K A A  + + +     S  T +   +SS    AA K K D ++++E+  +V      
Subjt:  EAAFEEQEESPPNSPSAADVVEIQTNVAASDALDSHDGDDDPKAATAAAAAVATHSGIPSAPTTSMFVSSSSNVSAAPKTKDDDEEEEEENVEVELAKFP

Query:  SSGDPDKMAKMQAILSQFTEEQMSRYESFRRAGFQKANMKRLLASISGTQKISVPMTIVVSGIAKMFVGELVETARVVMTERNDTGPIRPCHLREAYRRL
           D D++ KMQ ++S F+EEQ++RYE +RR+ F KA +KRL+ SI+GT  +S  + I +SGI+K+FVGE+VE A  V  +  +T P++P H+REA RRL
Subjt:  SSGDPDKMAKMQAILSQFTEEQMSRYESFRRAGFQKANMKRLLASISGTQKISVPMTIVVSGIAKMFVGELVETARVVMTERNDTGPIRPCHLREAYRRL

Query:  KLEGKIP
        K +G+IP
Subjt:  KLEGKIP

Q9M565 Transcription initiation factor TFIID subunit 111.2e-5457.33Show/hide
Query:  MKQSKDPFEAAF-EEQEESPPNSPSAADVVEIQTNVAASDALDSHDGDDDPKAATAAAAAVATHSGIPSAPTTSMFVSSSSNVSAAPKTKDDDEEEEEEN
        MK SKDPFEAA  EEQEESPP SP         +     +   + D D+ P         V     +  A  TS+ V+ + N     K KD+D+EEEEEN
Subjt:  MKQSKDPFEAAF-EEQEESPPNSPSAADVVEIQTNVAASDALDSHDGDDDPKAATAAAAAVATHSGIPSAPTTSMFVSSSSNVSAAPKTKDDDEEEEEEN

Query:  VEVELAKFPSSGDPDKMAKMQAILSQFTEEQMSRYESFRRAGFQKANMKRLLASISGTQKISVPMTIVVSGIAKMFVGELVETARVVMTERNDTGPIRPC
        ++VEL K+P+S DP KMAKMQ ILSQFTE+QMSRYESFRR+  Q+  MK+LL  ++G+QKI +PM IV  GIAKMFVGELVETARVVM ER ++GPIRPC
Subjt:  VEVELAKFPSSGDPDKMAKMQAILSQFTEEQMSRYESFRRAGFQKANMKRLLASISGTQKISVPMTIVVSGIAKMFVGELVETARVVMTERNDTGPIRPC

Query:  HLREAYRRLKLEGKIPRKSVPRLFR
        H+RE+YRRLKLEGK+P++SVPRLFR
Subjt:  HLREAYRRLKLEGKIPRKSVPRLFR

Arabidopsis top hitse value%identityAlignment
AT1G20000.1 TBP-associated factor 11B1.5e-3948Show/hide
Query:  MKQSKDPFEAAFEEQEESPPNSPSAADVVEIQTNVAASDALDSHDGDDDPKAATAAAAAVATHSGIPSAPTTSMFVSSSSNVSAAPKTKDDDEEEEEENV
        MK SKDPFEAA EEQEESP         VE +  +         +GD+                                   A  K K     E +   
Subjt:  MKQSKDPFEAAFEEQEESPPNSPSAADVVEIQTNVAASDALDSHDGDDDPKAATAAAAAVATHSGIPSAPTTSMFVSSSSNVSAAPKTKDDDEEEEEENV

Query:  EVELAKFPSSGDPDKMA-KMQAILSQFTEEQMSRYESFRRAGFQKANMKRLLASISGTQKISVPMTIVVSGIAKMFVGELVETARVVMTERNDTGPIRPC
        EVE  K  +  DP   A KMQ ILSQFTEEQMSRYESFRR+GF+K++M++L+  I+G  K+   M IVV GIAKMFVG+LVETARVVM ER ++GPIRPC
Subjt:  EVELAKFPSSGDPDKMA-KMQAILSQFTEEQMSRYESFRRAGFQKANMKRLLASISGTQKISVPMTIVVSGIAKMFVGELVETARVVMTERNDTGPIRPC

Query:  HLREAYRRLKLEGKIPRKSVPRLFR
        H+RE+YRRLKL+GK+P++SV RLFR
Subjt:  HLREAYRRLKLEGKIPRKSVPRLFR

AT4G20280.1 TBP-associated factor 118.5e-5657.33Show/hide
Query:  MKQSKDPFEAAF-EEQEESPPNSPSAADVVEIQTNVAASDALDSHDGDDDPKAATAAAAAVATHSGIPSAPTTSMFVSSSSNVSAAPKTKDDDEEEEEEN
        MK SKDPFEAA  EEQEESPP SP         +     +   + D D+ P         V     +  A  TS+ V+ + N     K KD+D+EEEEEN
Subjt:  MKQSKDPFEAAF-EEQEESPPNSPSAADVVEIQTNVAASDALDSHDGDDDPKAATAAAAAVATHSGIPSAPTTSMFVSSSSNVSAAPKTKDDDEEEEEEN

Query:  VEVELAKFPSSGDPDKMAKMQAILSQFTEEQMSRYESFRRAGFQKANMKRLLASISGTQKISVPMTIVVSGIAKMFVGELVETARVVMTERNDTGPIRPC
        ++VEL K+P+S DP KMAKMQ ILSQFTE+QMSRYESFRR+  Q+  MK+LL  ++G+QKI +PM IV  GIAKMFVGELVETARVVM ER ++GPIRPC
Subjt:  VEVELAKFPSSGDPDKMAKMQAILSQFTEEQMSRYESFRRAGFQKANMKRLLASISGTQKISVPMTIVVSGIAKMFVGELVETARVVMTERNDTGPIRPC

Query:  HLREAYRRLKLEGKIPRKSVPRLFR
        H+RE+YRRLKLEGK+P++SVPRLFR
Subjt:  HLREAYRRLKLEGKIPRKSVPRLFR


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAGCAATCGAAGGACCCATTTGAAGCGGCGTTTGAGGAGCAGGAGGAATCGCCGCCGAACTCCCCCTCTGCCGCCGACGTTGTCGAAATCCAGACCAATGTAGCCGC
TTCCGATGCTCTTGATTCTCACGACGGCGACGATGATCCAAAAGCCGCCACCGCAGCCGCCGCCGCCGTCGCCACACATTCCGGTATCCCTTCTGCACCCACCACTTCTA
TGTTTGTTTCTTCTTCCTCCAATGTCTCTGCCGCCCCTAAAACCAAAGACGACGACGAGGAAGAAGAGGAGGAGAATGTGGAAGTTGAGCTCGCCAAATTCCCCTCCAGC
GGTGACCCCGATAAAATGGCGAAGATGCAAGCCATTCTCTCACAATTTACAGAAGAACAGATGAGTCGGTATGAGTCCTTCCGGAGAGCTGGATTTCAGAAAGCTAATAT
GAAAAGGCTATTAGCAAGCATCTCAGGGACACAGAAAATTTCTGTACCAATGACAATTGTAGTGTCCGGGATAGCGAAGATGTTTGTTGGTGAGCTCGTAGAAACAGCAA
GAGTTGTTATGACAGAGCGGAATGATACCGGACCTATCAGGCCATGCCATCTCAGAGAAGCATATAGAAGACTAAAGCTTGAAGGTAAGATTCCAAGGAAATCAGTGCCT
AGGCTCTTTCGC
mRNA sequenceShow/hide mRNA sequence
ATGAAGCAATCGAAGGACCCATTTGAAGCGGCGTTTGAGGAGCAGGAGGAATCGCCGCCGAACTCCCCCTCTGCCGCCGACGTTGTCGAAATCCAGACCAATGTAGCCGC
TTCCGATGCTCTTGATTCTCACGACGGCGACGATGATCCAAAAGCCGCCACCGCAGCCGCCGCCGCCGTCGCCACACATTCCGGTATCCCTTCTGCACCCACCACTTCTA
TGTTTGTTTCTTCTTCCTCCAATGTCTCTGCCGCCCCTAAAACCAAAGACGACGACGAGGAAGAAGAGGAGGAGAATGTGGAAGTTGAGCTCGCCAAATTCCCCTCCAGC
GGTGACCCCGATAAAATGGCGAAGATGCAAGCCATTCTCTCACAATTTACAGAAGAACAGATGAGTCGGTATGAGTCCTTCCGGAGAGCTGGATTTCAGAAAGCTAATAT
GAAAAGGCTATTAGCAAGCATCTCAGGGACACAGAAAATTTCTGTACCAATGACAATTGTAGTGTCCGGGATAGCGAAGATGTTTGTTGGTGAGCTCGTAGAAACAGCAA
GAGTTGTTATGACAGAGCGGAATGATACCGGACCTATCAGGCCATGCCATCTCAGAGAAGCATATAGAAGACTAAAGCTTGAAGGTAAGATTCCAAGGAAATCAGTGCCT
AGGCTCTTTCGC
Protein sequenceShow/hide protein sequence
MKQSKDPFEAAFEEQEESPPNSPSAADVVEIQTNVAASDALDSHDGDDDPKAATAAAAAVATHSGIPSAPTTSMFVSSSSNVSAAPKTKDDDEEEEEENVEVELAKFPSS
GDPDKMAKMQAILSQFTEEQMSRYESFRRAGFQKANMKRLLASISGTQKISVPMTIVVSGIAKMFVGELVETARVVMTERNDTGPIRPCHLREAYRRLKLEGKIPRKSVP
RLFR