; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MS012880 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS012880
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Descriptionhistone deacetylase complex subunit SAP18-like
Genome locationscaffold38:55249..56850
RNA-Seq ExpressionMS012880
SyntenyMS012880
Gene Ontology termsGO:0045892 - negative regulation of transcription, DNA-templated (biological process)
GO:0005634 - nucleus (cellular component)
GO:0003714 - transcription corepressor activity (molecular function)
InterPro domainsIPR010516 - Sin3 associated polypeptide p18
IPR042534 - Sin3 associated polypeptide p18 superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6596815.1 Histone deacetylase complex subunit SAP18, partial [Cucurbita argyrosperma subsp. sororia]1.3e-6788.54Show/hide
Query:  MDKRSRDEKMSGAATAPPQGRPSARPLPPPSQPKAPPPPPRLRFEPVDRE-----------KVGGHHTDEDFAIRGKEPKDEVQIYTWKDATLRELTDLV
        MDKRSRDEKMSGAATAPPQGRPSARPLPPPSQ KAPPPPPR RFEPVDRE           KVG HHTDEDFAIRGKEPKDEVQIYTWKDATLRELTDLV
Subjt:  MDKRSRDEKMSGAATAPPQGRPSARPLPPPSQPKAPPPPPRLRFEPVDRE-----------KVGGHHTDEDFAIRGKEPKDEVQIYTWKDATLRELTDLV

Query:  KEVAPEARRRNAKLSFAFVYPDKRGRFVLKQVGMTHSYGNGRRLDDSKALGELDFQV
        KEVAPEARRRNAKLSFAFVYPDKRGRFVLK VG THSYGNGRRLD SKALGELDFQ+
Subjt:  KEVAPEARRRNAKLSFAFVYPDKRGRFVLKQVGMTHSYGNGRRLDDSKALGELDFQV

KAG7028342.1 Histone deacetylase complex subunit SAP18, partial [Cucurbita argyrosperma subsp. argyrosperma]2.8e-7095.21Show/hide
Query:  MDKRSRDEKMSGAATAPPQGRPSARPLPPPSQPKAPPPPPRLRFEPVDREKVGGHHTDEDFAIRGKEPKDEVQIYTWKDATLRELTDLVKEVAPEARRRN
        MDKRSRDEKMSGAATAPPQGRPSARPLPPPSQ KAPPPPPR RFEPVDREKVG HHTDEDFAIRGKEPKDEVQIYTWKDATLRELTDLVKEVAPEARRRN
Subjt:  MDKRSRDEKMSGAATAPPQGRPSARPLPPPSQPKAPPPPPRLRFEPVDREKVGGHHTDEDFAIRGKEPKDEVQIYTWKDATLRELTDLVKEVAPEARRRN

Query:  AKLSFAFVYPDKRGRFVLKQVGMTHSYGNGRRLDDSKALGELDFQV
        AKLSFAFVYPDKRGRFVLK VG THSYGNGRRLD SKALGELDFQ+
Subjt:  AKLSFAFVYPDKRGRFVLKQVGMTHSYGNGRRLDDSKALGELDFQV

XP_004147963.1 histone deacetylase complex subunit SAP18 [Cucumis sativus]3.8e-6787.9Show/hide
Query:  MDKRSRDEKMSGAATAPPQGRPSARPLPPPSQPKAPPPPPRLRFEPVDRE-----------KVGGHHTDEDFAIRGKEPKDEVQIYTWKDATLRELTDLV
        MDKRSRDEK SGAATAP QGRPS RPLPPPSQ KAPPP PR RFEPVDRE           KVGGHHTDEDFA+RGKEPKDEVQIYTWKDATLRELTDLV
Subjt:  MDKRSRDEKMSGAATAPPQGRPSARPLPPPSQPKAPPPPPRLRFEPVDRE-----------KVGGHHTDEDFAIRGKEPKDEVQIYTWKDATLRELTDLV

Query:  KEVAPEARRRNAKLSFAFVYPDKRGRFVLKQVGMTHSYGNGRRLDDSKALGELDFQV
        KEVAPEARRRNAKLSFAFVYPDKRGRFVLKQVGMTHSYGNGRRLDDSKALGELDFQ+
Subjt:  KEVAPEARRRNAKLSFAFVYPDKRGRFVLKQVGMTHSYGNGRRLDDSKALGELDFQV

XP_022152730.1 histone deacetylase complex subunit SAP18-like [Momordica charantia]7.4e-7191.08Show/hide
Query:  MDKRSRDEKMSGAATAPPQGRPSARPLPPPSQPKAPPPPPRLRFEPVDRE-----------KVGGHHTDEDFAIRGKEPKDEVQIYTWKDATLRELTDLV
        MDKRSRDEKMSGAATAPPQGRPSARPLPPPSQPKAPPPPPR RFEPVDRE           KVGGHH+DEDFAIRGKEPKDEVQIYTWKDATLRELTDLV
Subjt:  MDKRSRDEKMSGAATAPPQGRPSARPLPPPSQPKAPPPPPRLRFEPVDRE-----------KVGGHHTDEDFAIRGKEPKDEVQIYTWKDATLRELTDLV

Query:  KEVAPEARRRNAKLSFAFVYPDKRGRFVLKQVGMTHSYGNGRRLDDSKALGELDFQV
        KEVAPEARRRNAKLSFAFVYPDKRGRFVLKQVGMTHSYGNGRRLDDSKALGELDFQ+
Subjt:  KEVAPEARRRNAKLSFAFVYPDKRGRFVLKQVGMTHSYGNGRRLDDSKALGELDFQV

XP_022946300.1 histone deacetylase complex subunit SAP18-like [Cucurbita moschata]1.0e-6788.54Show/hide
Query:  MDKRSRDEKMSGAATAPPQGRPSARPLPPPSQPKAPPPPPRLRFEPVDRE-----------KVGGHHTDEDFAIRGKEPKDEVQIYTWKDATLRELTDLV
        MDKRSRDEKMSGAATAPPQGRPSARPLPPPSQ KAPPPPPR RFEPVDRE           KVG HHTDEDFAIRGKEPKDEVQIYTWKDATLRELTDLV
Subjt:  MDKRSRDEKMSGAATAPPQGRPSARPLPPPSQPKAPPPPPRLRFEPVDRE-----------KVGGHHTDEDFAIRGKEPKDEVQIYTWKDATLRELTDLV

Query:  KEVAPEARRRNAKLSFAFVYPDKRGRFVLKQVGMTHSYGNGRRLDDSKALGELDFQV
        KEVAPEARRRNAKLSFAFVYPDKRGRFVLK VG THSYGNGRRLD SKALGELDFQ+
Subjt:  KEVAPEARRRNAKLSFAFVYPDKRGRFVLKQVGMTHSYGNGRRLDDSKALGELDFQV

TrEMBL top hitse value%identityAlignment
A0A0A0L751 Uncharacterized protein1.8e-6787.9Show/hide
Query:  MDKRSRDEKMSGAATAPPQGRPSARPLPPPSQPKAPPPPPRLRFEPVDRE-----------KVGGHHTDEDFAIRGKEPKDEVQIYTWKDATLRELTDLV
        MDKRSRDEK SGAATAP QGRPS RPLPPPSQ KAPPP PR RFEPVDRE           KVGGHHTDEDFA+RGKEPKDEVQIYTWKDATLRELTDLV
Subjt:  MDKRSRDEKMSGAATAPPQGRPSARPLPPPSQPKAPPPPPRLRFEPVDRE-----------KVGGHHTDEDFAIRGKEPKDEVQIYTWKDATLRELTDLV

Query:  KEVAPEARRRNAKLSFAFVYPDKRGRFVLKQVGMTHSYGNGRRLDDSKALGELDFQV
        KEVAPEARRRNAKLSFAFVYPDKRGRFVLKQVGMTHSYGNGRRLDDSKALGELDFQ+
Subjt:  KEVAPEARRRNAKLSFAFVYPDKRGRFVLKQVGMTHSYGNGRRLDDSKALGELDFQV

A0A5D3D7E1 Histone deacetylase complex subunit SAP18-like5.4e-6787.9Show/hide
Query:  MDKRSRDEKMSGAATAPPQGRPSARPLPPPSQPKAPPPPPRLRFEPVDRE-----------KVGGHHTDEDFAIRGKEPKDEVQIYTWKDATLRELTDLV
        MDKRSRDEK SGAA AP QGRPS RPLPPPSQ KAPPP PR RFEPVDRE           KVGGHHTDEDFAIRGKEPKDEVQIYTWKDATLRELTDLV
Subjt:  MDKRSRDEKMSGAATAPPQGRPSARPLPPPSQPKAPPPPPRLRFEPVDRE-----------KVGGHHTDEDFAIRGKEPKDEVQIYTWKDATLRELTDLV

Query:  KEVAPEARRRNAKLSFAFVYPDKRGRFVLKQVGMTHSYGNGRRLDDSKALGELDFQV
        KEVAPEARRRNAKLSFAFVYPDKRGRFVLKQVGMTHSYGNGRRLDDSKALGELDFQ+
Subjt:  KEVAPEARRRNAKLSFAFVYPDKRGRFVLKQVGMTHSYGNGRRLDDSKALGELDFQV

A0A6J1DES5 histone deacetylase complex subunit SAP18-like3.6e-7191.08Show/hide
Query:  MDKRSRDEKMSGAATAPPQGRPSARPLPPPSQPKAPPPPPRLRFEPVDRE-----------KVGGHHTDEDFAIRGKEPKDEVQIYTWKDATLRELTDLV
        MDKRSRDEKMSGAATAPPQGRPSARPLPPPSQPKAPPPPPR RFEPVDRE           KVGGHH+DEDFAIRGKEPKDEVQIYTWKDATLRELTDLV
Subjt:  MDKRSRDEKMSGAATAPPQGRPSARPLPPPSQPKAPPPPPRLRFEPVDRE-----------KVGGHHTDEDFAIRGKEPKDEVQIYTWKDATLRELTDLV

Query:  KEVAPEARRRNAKLSFAFVYPDKRGRFVLKQVGMTHSYGNGRRLDDSKALGELDFQV
        KEVAPEARRRNAKLSFAFVYPDKRGRFVLKQVGMTHSYGNGRRLDDSKALGELDFQ+
Subjt:  KEVAPEARRRNAKLSFAFVYPDKRGRFVLKQVGMTHSYGNGRRLDDSKALGELDFQV

A0A6J1G3G8 histone deacetylase complex subunit SAP18-like4.9e-6888.54Show/hide
Query:  MDKRSRDEKMSGAATAPPQGRPSARPLPPPSQPKAPPPPPRLRFEPVDRE-----------KVGGHHTDEDFAIRGKEPKDEVQIYTWKDATLRELTDLV
        MDKRSRDEKMSGAATAPPQGRPSARPLPPPSQ KAPPPPPR RFEPVDRE           KVG HHTDEDFAIRGKEPKDEVQIYTWKDATLRELTDLV
Subjt:  MDKRSRDEKMSGAATAPPQGRPSARPLPPPSQPKAPPPPPRLRFEPVDRE-----------KVGGHHTDEDFAIRGKEPKDEVQIYTWKDATLRELTDLV

Query:  KEVAPEARRRNAKLSFAFVYPDKRGRFVLKQVGMTHSYGNGRRLDDSKALGELDFQV
        KEVAPEARRRNAKLSFAFVYPDKRGRFVLK VG THSYGNGRRLD SKALGELDFQ+
Subjt:  KEVAPEARRRNAKLSFAFVYPDKRGRFVLKQVGMTHSYGNGRRLDDSKALGELDFQV

A0A6J1KTJ0 histone deacetylase complex subunit SAP18-like4.9e-6888.54Show/hide
Query:  MDKRSRDEKMSGAATAPPQGRPSARPLPPPSQPKAPPPPPRLRFEPVDRE-----------KVGGHHTDEDFAIRGKEPKDEVQIYTWKDATLRELTDLV
        MDKRSRDEKMSGAATAPPQGRPSARPLPPPSQ KAPPPPPR RFEPVDRE           KVG HHTDEDFAIRGKEPKDEVQIYTWKDATLRELTDLV
Subjt:  MDKRSRDEKMSGAATAPPQGRPSARPLPPPSQPKAPPPPPRLRFEPVDRE-----------KVGGHHTDEDFAIRGKEPKDEVQIYTWKDATLRELTDLV

Query:  KEVAPEARRRNAKLSFAFVYPDKRGRFVLKQVGMTHSYGNGRRLDDSKALGELDFQV
        KEVAPEARRRNAKLSFAFVYPDKRGRFVLK VG THSYGNGRRLD SKALGELDFQ+
Subjt:  KEVAPEARRRNAKLSFAFVYPDKRGRFVLKQVGMTHSYGNGRRLDDSKALGELDFQV

SwissProt top hitse value%identityAlignment
O00422 Histone deacetylase complex subunit SAP184.2e-1644.35Show/hide
Query:  EPVDREKV------------GGHHTDEDFAIRGKEPKDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFAFVYPD-KRGRFVLKQVGMTHSYGNGR
        +P+DREK             G HH  ++F+ RG  P  E+QIYTW DATL+ELT LVKEV PEAR++    +FA V+ D KR  + +K++G T S   G 
Subjt:  EPVDREKV------------GGHHTDEDFAIRGKEPKDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFAFVYPD-KRGRFVLKQVGMTHSYGNGR

Query:  RLDDSKALGELDFQV
          DDS  L    FQ+
Subjt:  RLDDSKALGELDFQV

O55128 Histone deacetylase complex subunit SAP185.4e-1644.35Show/hide
Query:  EPVDREKV------------GGHHTDEDFAIRGKEPKDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFAFVYPD-KRGRFVLKQVGMTHSYGNGR
        +P+DREK             G HH  ++F+ RG  P  E+QIYTW DATL+ELT LVKEV PEAR++    +FA V+ D KR  + +K++G T S   G 
Subjt:  EPVDREKV------------GGHHTDEDFAIRGKEPKDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFAFVYPD-KRGRFVLKQVGMTHSYGNGR

Query:  RLDDSKALGELDFQV
          DDS  L    FQ+
Subjt:  RLDDSKALGELDFQV

O64644 Histone deacetylase complex subunit SAP185.2e-3557.93Show/hide
Query:  AATAPPQGRPSARPLPPPSQPKAPPPPPRLRFEPVDREKV-----------GGHHTDEDFAIRGKEPKDEVQIYTWKDATLRELTDLVKEVAPEARRRNA
        A  A  QG    RPLPPP +      PPR + EPVDREK            GGHHT ED+A+RGKEPKDEVQIYTWKDA+LRELTDLVKEV+  ARRRNA
Subjt:  AATAPPQGRPSARPLPPPSQPKAPPPPPRLRFEPVDREKV-----------GGHHTDEDFAIRGKEPKDEVQIYTWKDATLRELTDLVKEVAPEARRRNA

Query:  KLSFAFVYPDKRGRFVLKQVGMTHSYGNGRRLDDSKALGELDFQV
        +LSFAFVYP+ +G + +++VG T +Y N ++ DDSK L EL F++
Subjt:  KLSFAFVYPDKRGRFVLKQVGMTHSYGNGRRLDDSKALGELDFQV

Q3T022 Histone deacetylase complex subunit SAP184.2e-1644.35Show/hide
Query:  EPVDREKV------------GGHHTDEDFAIRGKEPKDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFAFVYPD-KRGRFVLKQVGMTHSYGNGR
        +P+DREK             G HH  ++F+ RG  P  E+QIYTW DATL+ELT LVKEV PEAR++    +FA V+ D KR  + +K++G T S   G 
Subjt:  EPVDREKV------------GGHHTDEDFAIRGKEPKDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFAFVYPD-KRGRFVLKQVGMTHSYGNGR

Query:  RLDDSKALGELDFQV
          DDS  L    FQ+
Subjt:  RLDDSKALGELDFQV

Q5RDT5 Histone deacetylase complex subunit SAP184.2e-1644.35Show/hide
Query:  EPVDREKV------------GGHHTDEDFAIRGKEPKDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFAFVYPD-KRGRFVLKQVGMTHSYGNGR
        +P+DREK             G HH  ++F+ RG  P  E+QIYTW DATL+ELT LVKEV PEAR++    +FA V+ D KR  + +K++G T S   G 
Subjt:  EPVDREKV------------GGHHTDEDFAIRGKEPKDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFAFVYPD-KRGRFVLKQVGMTHSYGNGR

Query:  RLDDSKALGELDFQV
          DDS  L    FQ+
Subjt:  RLDDSKALGELDFQV

Arabidopsis top hitse value%identityAlignment
AT2G45640.1 SIN3 associated polypeptide P183.7e-3657.93Show/hide
Query:  AATAPPQGRPSARPLPPPSQPKAPPPPPRLRFEPVDREKV-----------GGHHTDEDFAIRGKEPKDEVQIYTWKDATLRELTDLVKEVAPEARRRNA
        A  A  QG    RPLPPP +      PPR + EPVDREK            GGHHT ED+A+RGKEPKDEVQIYTWKDA+LRELTDLVKEV+  ARRRNA
Subjt:  AATAPPQGRPSARPLPPPSQPKAPPPPPRLRFEPVDREKV-----------GGHHTDEDFAIRGKEPKDEVQIYTWKDATLRELTDLVKEVAPEARRRNA

Query:  KLSFAFVYPDKRGRFVLKQVGMTHSYGNGRRLDDSKALGELDFQV
        +LSFAFVYP+ +G + +++VG T +Y N ++ DDSK L EL F++
Subjt:  KLSFAFVYPDKRGRFVLKQVGMTHSYGNGRRLDDSKALGELDFQV

AT2G45640.2 SIN3 associated polypeptide P183.5e-3457.93Show/hide
Query:  AATAPPQGRPSARPLPPPSQPKAPPPPPRLRFEPVDREKV-----------GGHHTDEDFAIRGKEPKDEVQIYTWKDATLRELTDLVKEVAPEARRRNA
        A  A  QG    RPLPPP +      PPR + EPVDREK            GGHHT ED+A+RGKEPKDEVQIYTWKDA+LRELTDLVKEV+  ARRRNA
Subjt:  AATAPPQGRPSARPLPPPSQPKAPPPPPRLRFEPVDREKV-----------GGHHTDEDFAIRGKEPKDEVQIYTWKDATLRELTDLVKEVAPEARRRNA

Query:  KLSFAFVYPDKRGRFVLKQVGMTHSYGNGRRLDDSKALGELDFQV
        +LSFAFVYP+ +G +    VG T +Y N ++ DDSK L EL F++
Subjt:  KLSFAFVYPDKRGRFVLKQVGMTHSYGNGRRLDDSKALGELDFQV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGACAAGAGAAGCAGAGATGAGAAGATGAGCGGAGCTGCAACTGCTCCGCCGCAAGGTAGACCTTCCGCCCGGCCTCTCCCTCCGCCGTCTCAGCCCAAAGCTCCGCC
GCCGCCTCCTCGCCTTCGTTTCGAACCCGTCGACCGCGAAAAGGTAGGAGGTCACCACACTGATGAGGATTTTGCAATTAGAGGCAAGGAACCCAAAGATGAGGTTCAGA
TTTACACATGGAAAGATGCAACACTCCGGGAACTGACCGATCTAGTTAAGGAGGTTGCTCCGGAGGCAAGAAGAAGAAATGCAAAACTTTCTTTTGCTTTTGTTTATCCC
GATAAGCGCGGTCGGTTCGTCTTGAAACAGGTTGGAATGACACATTCTTATGGAAATGGGAGGAGATTAGATGATAGCAAGGCATTGGGTGAACTGGACTTCCAGGTA
mRNA sequenceShow/hide mRNA sequence
ATGGACAAGAGAAGCAGAGATGAGAAGATGAGCGGAGCTGCAACTGCTCCGCCGCAAGGTAGACCTTCCGCCCGGCCTCTCCCTCCGCCGTCTCAGCCCAAAGCTCCGCC
GCCGCCTCCTCGCCTTCGTTTCGAACCCGTCGACCGCGAAAAGGTAGGAGGTCACCACACTGATGAGGATTTTGCAATTAGAGGCAAGGAACCCAAAGATGAGGTTCAGA
TTTACACATGGAAAGATGCAACACTCCGGGAACTGACCGATCTAGTTAAGGAGGTTGCTCCGGAGGCAAGAAGAAGAAATGCAAAACTTTCTTTTGCTTTTGTTTATCCC
GATAAGCGCGGTCGGTTCGTCTTGAAACAGGTTGGAATGACACATTCTTATGGAAATGGGAGGAGATTAGATGATAGCAAGGCATTGGGTGAACTGGACTTCCAGGTA
Protein sequenceShow/hide protein sequence
MDKRSRDEKMSGAATAPPQGRPSARPLPPPSQPKAPPPPPRLRFEPVDREKVGGHHTDEDFAIRGKEPKDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFAFVYP
DKRGRFVLKQVGMTHSYGNGRRLDDSKALGELDFQV