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MS012897 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS012897
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Descriptionpentatricopeptide repeat-containing protein At2g13600-like
Genome locationscaffold38:198141..198273
RNA-Seq ExpressionMS012897
SyntenyMS012897
Gene Ontology termsGO:0008380 - RNA splicing (biological process)
GO:1900865 - chloroplast RNA modification (biological process)
GO:0009507 - chloroplast (cellular component)
GO:0003729 - mRNA binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF3951182.1 hypothetical protein CMV_023142 [Castanea mollissima]1.2e-1184.44Show/hide
Query:  FGNLLNACADLG-LQLGRQAHSHVLKYGFRFQLGEQSDIYVGNSL
        FGNLLNACA+L  LQLGRQAHSHVLK+GFRFQ GE+SDI+VGNSL
Subjt:  FGNLLNACADLG-LQLGRQAHSHVLKYGFRFQLGEQSDIYVGNSL
OMP01271.1 hypothetical protein COLO4_12017 [Corchorus olitorius]1.5e-1182.22Show/hide
Query:  FGNLLNACADLG-LQLGRQAHSHVLKYGFRFQLGEQSDIYVGNSL
        FGNLLNACA+L  LQLGRQAH+HVLK+GFRFQ GE+SDI+VGNSL
Subjt:  FGNLLNACADLG-LQLGRQAHSHVLKYGFRFQLGEQSDIYVGNSL
XP_022159229.1 pentatricopeptide repeat-containing protein At2g13600-like [Momordica charantia]1.2e-1184.44Show/hide
Query:  FGNLLNACADLG-LQLGRQAHSHVLKYGFRFQLGEQSDIYVGNSL
        FGNLLNACA+L  LQLGRQAHSHVLK+GFRFQ GE+SDI+VGNSL
Subjt:  FGNLLNACADLG-LQLGRQAHSHVLKYGFRFQLGEQSDIYVGNSL
XP_023900160.1 pentatricopeptide repeat-containing protein At2g13600 [Quercus suber]1.2e-1184.44Show/hide
Query:  FGNLLNACADLG-LQLGRQAHSHVLKYGFRFQLGEQSDIYVGNSL
        FGNLLNACA+L  LQLGRQAHSHVLK+GFRFQ GE+SDI+VGNSL
Subjt:  FGNLLNACADLG-LQLGRQAHSHVLKYGFRFQLGEQSDIYVGNSL
XP_030937454.1 pentatricopeptide repeat-containing protein At2g13600 [Quercus lobata]1.2e-1184.44Show/hide
Query:  FGNLLNACADLG-LQLGRQAHSHVLKYGFRFQLGEQSDIYVGNSL
        FGNLLNACA+L  LQLGRQAHSHVLK+GFRFQ GE+SDI+VGNSL
Subjt:  FGNLLNACADLG-LQLGRQAHSHVLKYGFRFQLGEQSDIYVGNSL
TrEMBL top hitse value%identityAlignment
A0A1R3K2H5 DYW_deaminase domain-containing protein7.4e-1282.22Show/hide
Query:  FGNLLNACADLG-LQLGRQAHSHVLKYGFRFQLGEQSDIYVGNSL
        FGNLLNACA+L  LQLGRQAH+HVLK+GFRFQ GE+SDI+VGNSL
Subjt:  FGNLLNACADLG-LQLGRQAHSHVLKYGFRFQLGEQSDIYVGNSL
A0A1R3KCE7 DYW_deaminase domain-containing protein7.4e-1282.22Show/hide
Query:  FGNLLNACADLG-LQLGRQAHSHVLKYGFRFQLGEQSDIYVGNSL
        FGNLLNACA+L  LQLGRQAH+HVLK+GFRFQ GE+SDI+VGNSL
Subjt:  FGNLLNACADLG-LQLGRQAHSHVLKYGFRFQLGEQSDIYVGNSL
A0A2N9FMT8 Uncharacterized protein5.7e-1284.44Show/hide
Query:  FGNLLNACADLG-LQLGRQAHSHVLKYGFRFQLGEQSDIYVGNSL
        FGNLLNACA+L  LQLGRQAHSHVLK+GFRFQ GE+SDI+VGNSL
Subjt:  FGNLLNACADLG-LQLGRQAHSHVLKYGFRFQLGEQSDIYVGNSL
A0A2N9J4U8 Uncharacterized protein5.7e-1284.44Show/hide
Query:  FGNLLNACADLG-LQLGRQAHSHVLKYGFRFQLGEQSDIYVGNSL
        FGNLLNACA+L  LQLGRQAHSHVLK+GFRFQ GE+SDI+VGNSL
Subjt:  FGNLLNACADLG-LQLGRQAHSHVLKYGFRFQLGEQSDIYVGNSL
A0A6J1E1T7 pentatricopeptide repeat-containing protein At2g13600-like5.7e-1284.44Show/hide
Query:  FGNLLNACADLG-LQLGRQAHSHVLKYGFRFQLGEQSDIYVGNSL
        FGNLLNACA+L  LQLGRQAHSHVLK+GFRFQ GE+SDI+VGNSL
Subjt:  FGNLLNACADLG-LQLGRQAHSHVLKYGFRFQLGEQSDIYVGNSL
SwissProt top hitse value%identityAlignment
Q9SIT7 Pentatricopeptide repeat-containing protein At2g136001.0e-1068.89Show/hide
Query:  FGNLLNACADLG-LQLGRQAHSHVLKYGFRFQLGEQSDIYVGNSL
        F N+L ACADL  L LG QAH HVLK+GF+FQ GE+ DI+VGNSL
Subjt:  FGNLLNACADLG-LQLGRQAHSHVLKYGFRFQLGEQSDIYVGNSL
Arabidopsis top hitse value%identityAlignment
AT2G13600.1 Pentatricopeptide repeat (PPR) superfamily protein7.3e-1268.89Show/hide
Query:  FGNLLNACADLG-LQLGRQAHSHVLKYGFRFQLGEQSDIYVGNSL
        F N+L ACADL  L LG QAH HVLK+GF+FQ GE+ DI+VGNSL
Subjt:  FGNLLNACADLG-LQLGRQAHSHVLKYGFRFQLGEQSDIYVGNSL

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
TTTGGCAATCTCCTCAATGCTTGTGCAGATCTTGGTTTGCAGCTTGGACGACAGGCTCACTCTCATGTTCTAAAGTATGGATTTCGATTTCAATTGGGAGAACAGTCGGA
TATTTATGTTGGGAATTCTCTA
mRNA sequenceShow/hide mRNA sequence
TTTGGCAATCTCCTCAATGCTTGTGCAGATCTTGGTTTGCAGCTTGGACGACAGGCTCACTCTCATGTTCTAAAGTATGGATTTCGATTTCAATTGGGAGAACAGTCGGA
TATTTATGTTGGGAATTCTCTA
Protein sequenceShow/hide protein sequence
FGNLLNACADLGLQLGRQAHSHVLKYGFRFQLGEQSDIYVGNSL