CuGenDBv2

Gene ID	MS012903
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	General transcription factor IIH subunit 5-like
Genome location	scaffold38:275288..275488
RNA-Seq Expression	MS012903
Synteny	MS012903
Gene Ontology terms	GO:0006294 - nucleotide-excision repair, preincision complex assembly (biological process) GO:0006367 - transcription initiation from RNA polymerase II promoter (biological process) GO:0070816 - phosphorylation of RNA polymerase II C-terminal domain (biological process) GO:0000439 - transcription factor TFIIH core complex (cellular component) GO:0005669 - transcription factor TFIID complex (cellular component) GO:0005675 - transcription factor TFIIH holo complex (cellular component)
InterPro domains	IPR009400 - TFIIH subunit TTDA/Tfb5 IPR035935 - TFB5-like superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6596831.1 General transcription and DNA repair factor IIH subunit TFB5, partial [Cucurbita argyrosperma subsp. sororia]

1.6e-20

87.93

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Query:  DVPMAQFIINYNASLPASQRFIIHILDNTHMFVQPQVAGMIQNAISEFRDQNSYEKPT
        D+PM QFIINYNASLPAS RFIIHILDNTHMFVQP VA MI+NA+SEFRDQNSYEKPT
Subjt:  DVPMAQFIINYNASLPASQRFIIHILDNTHMFVQPQVAGMIQNAISEFRDQNSYEKPT

KAG7028360.1 RNA polymerase II transcription factor B subunit 5, partial [Cucurbita argyrosperma subsp. argyrosperma]

1.6e-20

87.93

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Query:  DVPMAQFIINYNASLPASQRFIIHILDNTHMFVQPQVAGMIQNAISEFRDQNSYEKPT
        D+PM QFIINYNASLPAS RFIIHILDNTHMFVQP VA MI+NA+SEFRDQNSYEKPT
Subjt:  DVPMAQFIINYNASLPASQRFIIHILDNTHMFVQPQVAGMIQNAISEFRDQNSYEKPT

XP_022152732.1 RNA polymerase II transcription factor B subunit 5 [Momordica charantia]

7.0e-24

100

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Query:  DVPMAQFIINYNASLPASQRFIIHILDNTHMFVQPQVAGMIQNAISEFRDQNSYEKPT
        DVPMAQFIINYNASLPASQRFIIHILDNTHMFVQPQVAGMIQNAISEFRDQNSYEKPT
Subjt:  DVPMAQFIINYNASLPASQRFIIHILDNTHMFVQPQVAGMIQNAISEFRDQNSYEKPT

XP_022943513.1 RNA polymerase II transcription factor B subunit 5 [Cucurbita moschata]

1.6e-20

87.93

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Query:  DVPMAQFIINYNASLPASQRFIIHILDNTHMFVQPQVAGMIQNAISEFRDQNSYEKPT
        D+PM QFIINYNASLPAS RFIIHILDNTHMFVQP VA MI+NA+SEFRDQNSYEKPT
Subjt:  DVPMAQFIINYNASLPASQRFIIHILDNTHMFVQPQVAGMIQNAISEFRDQNSYEKPT

XP_023005607.1 RNA polymerase II transcription factor B subunit 5 isoform X2 [Cucurbita maxima]

1.6e-20

87.93

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Query:  DVPMAQFIINYNASLPASQRFIIHILDNTHMFVQPQVAGMIQNAISEFRDQNSYEKPT
        D+PM QFIINYNASLPAS RFIIHILDNTHMFVQP VA MI+NA+SEFRDQNSYEKPT
Subjt:  DVPMAQFIINYNASLPASQRFIIHILDNTHMFVQPQVAGMIQNAISEFRDQNSYEKPT

TrEMBL top hits

e value

%identity

Alignment

A0A1S3BK87 RNA polymerase II transcription factor B subunit 5

1.0e-20

91.38

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Query:  DVPMAQFIINYNASLPASQRFIIHILDNTHMFVQPQVAGMIQNAISEFRDQNSYEKPT
        DVPMAQFIINYNASLPAS RFIIHILDNTHMFVQP VA MI+NAISEFRDQ SYEKPT
Subjt:  DVPMAQFIINYNASLPASQRFIIHILDNTHMFVQPQVAGMIQNAISEFRDQNSYEKPT

A0A6J1DFN4 RNA polymerase II transcription factor B subunit 5

3.4e-24

100

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Query:  DVPMAQFIINYNASLPASQRFIIHILDNTHMFVQPQVAGMIQNAISEFRDQNSYEKPT
        DVPMAQFIINYNASLPASQRFIIHILDNTHMFVQPQVAGMIQNAISEFRDQNSYEKPT
Subjt:  DVPMAQFIINYNASLPASQRFIIHILDNTHMFVQPQVAGMIQNAISEFRDQNSYEKPT

A0A6J1FX17 RNA polymerase II transcription factor B subunit 5

7.8e-21

87.93

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Query:  DVPMAQFIINYNASLPASQRFIIHILDNTHMFVQPQVAGMIQNAISEFRDQNSYEKPT
        D+PM QFIINYNASLPAS RFIIHILDNTHMFVQP VA MI+NA+SEFRDQNSYEKPT
Subjt:  DVPMAQFIINYNASLPASQRFIIHILDNTHMFVQPQVAGMIQNAISEFRDQNSYEKPT

A0A6J1KTL4 RNA polymerase II transcription factor B subunit 5 isoform X2

7.8e-21

87.93

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Query:  DVPMAQFIINYNASLPASQRFIIHILDNTHMFVQPQVAGMIQNAISEFRDQNSYEKPT
        D+PM QFIINYNASLPAS RFIIHILDNTHMFVQP VA MI+NA+SEFRDQNSYEKPT
Subjt:  DVPMAQFIINYNASLPASQRFIIHILDNTHMFVQPQVAGMIQNAISEFRDQNSYEKPT

A0A6J1L2N1 RNA polymerase II transcription factor B subunit 5 isoform X1

7.8e-21

87.93

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Query:  DVPMAQFIINYNASLPASQRFIIHILDNTHMFVQPQVAGMIQNAISEFRDQNSYEKPT
        D+PM QFIINYNASLPAS RFIIHILDNTHMFVQP VA MI+NA+SEFRDQNSYEKPT
Subjt:  DVPMAQFIINYNASLPASQRFIIHILDNTHMFVQPQVAGMIQNAISEFRDQNSYEKPT

SwissProt top hits

e value

%identity

Alignment

Q5ZKH0 General transcription factor IIH subunit 5

6.4e-04

37.04

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Query:  DVPMAQFIINYNASLPASQRFIIHILDNTHMFVQPQVAGMIQNAISEFRDQNSY
        D  M QF++  + S    ++FII  LD TH+FV  ++   +Q  + E  DQNS+
Subjt:  DVPMAQFIINYNASLPASQRFIIHILDNTHMFVQPQVAGMIQNAISEFRDQNSY

Q6NNM0 General transcription and DNA repair factor IIH subunit TFB5

9.2e-19

70.69

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Query:  DVPMAQFIINYNASLPASQRFIIHILDNTHMFVQPQVAGMIQNAISEFRDQNSYEKPT
        D+PM QFI+N N S+P SQ+FIIH+LD+TH+FVQP V  MI++AIS+FRDQNSYEKPT
Subjt:  DVPMAQFIINYNASLPASQRFIIHILDNTHMFVQPQVAGMIQNAISEFRDQNSYEKPT

Arabidopsis top hits

e value

%identity

Alignment

AT1G12400.1 Nucleotide excision repair, TFIIH, subunit TTDA

6.5e-20

70.69

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Query:  DVPMAQFIINYNASLPASQRFIIHILDNTHMFVQPQVAGMIQNAISEFRDQNSYEKPT
        D+PM QFI+N N S+P SQ+FIIH+LD+TH+FVQP V  MI++AIS+FRDQNSYEKPT
Subjt:  DVPMAQFIINYNASLPASQRFIIHILDNTHMFVQPQVAGMIQNAISEFRDQNSYEKPT

AT1G62886.1 Nucleotide excision repair, TFIIH, subunit TTDA

1.3e-12

60.34

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Query:  DVPMAQFIINYNASLPASQRFIIHI--LDNTHMFVQPQVAGMIQNAISEFRDQNSYEK
        DVPMAQFI + N SLPASQ+FII +  LD T MFV+P    MI++A+ +FRD+NSY K
Subjt:  DVPMAQFIINYNASLPASQRFIIHI--LDNTHMFVQPQVAGMIQNAISEFRDQNSYEK

Sequences

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CDS sequence

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AATAAATTGCTTTCTTCCTTGTGCAGCGACGTACCTATGGCACAATTTATCATCAATTACAACGCTTCCTTGCCTGCATCCCAAAGATTTATCATCCATATTTTGGATAA
CACCCACATGTTTGTGCAACCCCAGGTAGCCGGTATGATTCAAAACGCCATTTCTGAATTTCGAGATCAGAATTCTTATGAGAAACCTACT

mRNA sequence

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Protein sequence

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NKLLSSLCSDVPMAQFIINYNASLPASQRFIIHILDNTHMFVQPQVAGMIQNAISEFRDQNSYEKPT

MS012903 (gene) of Bitter gourd (TR) v1 genome