; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MS012913 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS012913
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Description40S ribosomal protein S13
Genome locationscaffold38:405508..406196
RNA-Seq ExpressionMS012913
SyntenyMS012913
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0005730 - nucleolus (cellular component)
GO:0016021 - integral component of membrane (cellular component)
GO:0022627 - cytosolic small ribosomal subunit (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
GO:0070181 - small ribosomal subunit rRNA binding (molecular function)
InterPro domainsIPR000589 - Ribosomal protein S15
IPR009068 - S15/NS1, RNA-binding
IPR012606 - Ribosomal protein S13/S15, N-terminal
IPR023029 - Ribosomal protein S15P


Homology Show/hide homology
GenBank top hitse value%identityAlignment
BAT75920.1 hypothetical protein VIGAN_01385700 [Vigna angularis var. angularis]9.5e-6898.51Show/hide
Query:  CRKGISASALPYKRTPPSWLKISSQDVDENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNR
        C KGIS+SALPYKRTPPSWLKISSQDVDENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNR
Subjt:  CRKGISASALPYKRTPPSWLKISSQDVDENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNR

Query:  KDKDSKFRLILVESRIHRLARYYKKTKKLPPVWK
        KDKDSKFRLILVESRIHRLARYYKKTKKLPPVWK
Subjt:  KDKDSKFRLILVESRIHRLARYYKKTKKLPPVWK

EXB89496.1 40S ribosomal protein S13 [Morus notabilis]3.6e-67100Show/hide
Query:  KGISASALPYKRTPPSWLKISSQDVDENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKD
        KGISASALPYKRTPPSWLKISSQDVDENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKD
Subjt:  KGISASALPYKRTPPSWLKISSQDVDENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKD

Query:  KDSKFRLILVESRIHRLARYYKKTKKLPPVWK
        KDSKFRLILVESRIHRLARYYKKTKKLPPVWK
Subjt:  KDSKFRLILVESRIHRLARYYKKTKKLPPVWK

KAA8520507.1 hypothetical protein F0562_014763 [Nyssa sinensis]1.2e-6797.04Show/hide
Query:  GCRKGISASALPYKRTPPSWLKISSQDVDENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERN
        GC KGISASALPYKRTPPSWLKISSQDV+EN+CKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAV+IRKHLERN
Subjt:  GCRKGISASALPYKRTPPSWLKISSQDVDENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERN

Query:  RKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWK
        RKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWK
Subjt:  RKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWK

PPD87080.1 hypothetical protein GOBAR_DD15985 [Gossypium barbadense]2.8e-6797.76Show/hide
Query:  CRKGISASALPYKRTPPSWLKISSQDVDENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNR
        C KGISASALPYKRTPPSWLKISSQDV+ENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAV+IRKHLERNR
Subjt:  CRKGISASALPYKRTPPSWLKISSQDVDENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNR

Query:  KDKDSKFRLILVESRIHRLARYYKKTKKLPPVWK
        KDKDSKFRLILVESRIHRLARYYKKTKKLPPVWK
Subjt:  KDKDSKFRLILVESRIHRLARYYKKTKKLPPVWK

XP_010101741.2 40S ribosomal protein S13 [Morus notabilis]3.6e-67100Show/hide
Query:  KGISASALPYKRTPPSWLKISSQDVDENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKD
        KGISASALPYKRTPPSWLKISSQDVDENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKD
Subjt:  KGISASALPYKRTPPSWLKISSQDVDENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKD

Query:  KDSKFRLILVESRIHRLARYYKKTKKLPPVWK
        KDSKFRLILVESRIHRLARYYKKTKKLPPVWK
Subjt:  KDSKFRLILVESRIHRLARYYKKTKKLPPVWK

TrEMBL top hitse value%identityAlignment
A0A0S3R5T9 Ribosomal_S13_N domain-containing protein4.6e-6898.51Show/hide
Query:  CRKGISASALPYKRTPPSWLKISSQDVDENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNR
        C KGIS+SALPYKRTPPSWLKISSQDVDENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNR
Subjt:  CRKGISASALPYKRTPPSWLKISSQDVDENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNR

Query:  KDKDSKFRLILVESRIHRLARYYKKTKKLPPVWK
        KDKDSKFRLILVESRIHRLARYYKKTKKLPPVWK
Subjt:  KDKDSKFRLILVESRIHRLARYYKKTKKLPPVWK

A0A5D2IGQ6 Ribosomal_S13_N domain-containing protein1.7e-6797.76Show/hide
Query:  CRKGISASALPYKRTPPSWLKISSQDVDENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNR
        C KGISASALPYKRTPPSWLKISSQDV+ENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAV+IRKHLERNR
Subjt:  CRKGISASALPYKRTPPSWLKISSQDVDENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNR

Query:  KDKDSKFRLILVESRIHRLARYYKKTKKLPPVWK
        KDKDSKFRLILVESRIHRLARYYKKTKKLPPVWK
Subjt:  KDKDSKFRLILVESRIHRLARYYKKTKKLPPVWK

A0A5J4ZTL7 Ribosomal_S13_N domain-containing protein6.0e-6897.04Show/hide
Query:  GCRKGISASALPYKRTPPSWLKISSQDVDENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERN
        GC KGISASALPYKRTPPSWLKISSQDV+EN+CKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAV+IRKHLERN
Subjt:  GCRKGISASALPYKRTPPSWLKISSQDVDENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERN

Query:  RKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWK
        RKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWK
Subjt:  RKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWK

A0A6J1DES0 40S ribosomal protein S131.7e-67100Show/hide
Query:  KGISASALPYKRTPPSWLKISSQDVDENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKD
        KGISASALPYKRTPPSWLKISSQDVDENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKD
Subjt:  KGISASALPYKRTPPSWLKISSQDVDENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKD

Query:  KDSKFRLILVESRIHRLARYYKKTKKLPPVWK
        KDSKFRLILVESRIHRLARYYKKTKKLPPVWK
Subjt:  KDSKFRLILVESRIHRLARYYKKTKKLPPVWK

W9RRR7 40S ribosomal protein S131.7e-67100Show/hide
Query:  KGISASALPYKRTPPSWLKISSQDVDENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKD
        KGISASALPYKRTPPSWLKISSQDVDENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKD
Subjt:  KGISASALPYKRTPPSWLKISSQDVDENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKD

Query:  KDSKFRLILVESRIHRLARYYKKTKKLPPVWK
        KDSKFRLILVESRIHRLARYYKKTKKLPPVWK
Subjt:  KDSKFRLILVESRIHRLARYYKKTKKLPPVWK

SwissProt top hitse value%identityAlignment
P46298 40S ribosomal protein S131.1e-6696.21Show/hide
Query:  KGISASALPYKRTPPSWLKISSQDVDENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKD
        KGIS+SALPY+RT PSWLKISSQDVDE ICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLER RKD
Subjt:  KGISASALPYKRTPPSWLKISSQDVDENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKD

Query:  KDSKFRLILVESRIHRLARYYKKTKKLPPVWK
        KDSKFRLILVESRIHRLARYYKKTKKLPPVWK
Subjt:  KDSKFRLILVESRIHRLARYYKKTKKLPPVWK

P59223 40S ribosomal protein S13-11.2e-6593.94Show/hide
Query:  KGISASALPYKRTPPSWLKISSQDVDENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKD
        KGISASALPYKR+ PSWLK + QDVDE+ICKFAKKGLTPSQIGVILRDSHGI QVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAV+IRKHLERNRKD
Subjt:  KGISASALPYKRTPPSWLKISSQDVDENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKD

Query:  KDSKFRLILVESRIHRLARYYKKTKKLPPVWK
        KDSKFRLILVESRIHRLARYYKKTKKLPPVWK
Subjt:  KDSKFRLILVESRIHRLARYYKKTKKLPPVWK

P59224 40S ribosomal protein S13-23.2e-6694.7Show/hide
Query:  KGISASALPYKRTPPSWLKISSQDVDENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKD
        KGISASALPYKR+ PSWLK +SQDVDE+ICKFAKKGLTPSQIGVILRDSHGI QVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAV+IRKHLERNRKD
Subjt:  KGISASALPYKRTPPSWLKISSQDVDENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKD

Query:  KDSKFRLILVESRIHRLARYYKKTKKLPPVWK
        KDSKFRLILVESRIHRLARYYKKTKKLPPVWK
Subjt:  KDSKFRLILVESRIHRLARYYKKTKKLPPVWK

P62302 40S ribosomal protein S131.2e-6897.73Show/hide
Query:  KGISASALPYKRTPPSWLKISSQDVDENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKD
        KGIS+SALPYKRTPPSWLKISSQDV+ENICKFAKKGLTPSQIGVILRDSHGIAQV SVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKD
Subjt:  KGISASALPYKRTPPSWLKISSQDVDENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKD

Query:  KDSKFRLILVESRIHRLARYYKKTKKLPPVWK
        KDSKFRLILVESRIHRLARYYKKTKKLPPVWK
Subjt:  KDSKFRLILVESRIHRLARYYKKTKKLPPVWK

Q69UI1 40S ribosomal protein S13-28.4e-5985.61Show/hide
Query:  KGISASALPYKRTPPSWLKISSQDVDENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKD
        KGIS+SALPYKRTPPSWLK ++ DV+E I K AKKG  PSQIGV+LRD HGI  VKSVTGSKILRILKAHGLAPEIPEDLY LIKKAV+IRKHLERNRKD
Subjt:  KGISASALPYKRTPPSWLKISSQDVDENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKD

Query:  KDSKFRLILVESRIHRLARYYKKTKKLPPVWK
        KDSKFRLILVESRIHRLARYYK+TKKLPP WK
Subjt:  KDSKFRLILVESRIHRLARYYKKTKKLPPVWK

Arabidopsis top hitse value%identityAlignment
AT3G60770.1 Ribosomal protein S13/S158.6e-6793.94Show/hide
Query:  KGISASALPYKRTPPSWLKISSQDVDENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKD
        KGISASALPYKR+ PSWLK + QDVDE+ICKFAKKGLTPSQIGVILRDSHGI QVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAV+IRKHLERNRKD
Subjt:  KGISASALPYKRTPPSWLKISSQDVDENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKD

Query:  KDSKFRLILVESRIHRLARYYKKTKKLPPVWK
        KDSKFRLILVESRIHRLARYYKKTKKLPPVWK
Subjt:  KDSKFRLILVESRIHRLARYYKKTKKLPPVWK

AT4G00100.1 ribosomal protein S13A2.3e-6794.7Show/hide
Query:  KGISASALPYKRTPPSWLKISSQDVDENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKD
        KGISASALPYKR+ PSWLK +SQDVDE+ICKFAKKGLTPSQIGVILRDSHGI QVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAV+IRKHLERNRKD
Subjt:  KGISASALPYKRTPPSWLKISSQDVDENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKD

Query:  KDSKFRLILVESRIHRLARYYKKTKKLPPVWK
        KDSKFRLILVESRIHRLARYYKKTKKLPPVWK
Subjt:  KDSKFRLILVESRIHRLARYYKKTKKLPPVWK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
TCCGTTTGTGGTTGCAGAAAAGGTATTTCGGCTTCGGCATTGCCGTACAAGAGGACTCCACCCAGTTGGCTCAAGATTTCTTCTCAAGATGTTGATGAAAACATCTGCAA
GTTTGCGAAGAAGGGTTTGACTCCGTCTCAGATCGGTGTGATTCTTCGTGATTCTCATGGTATTGCTCAGGTCAAGAGCGTTACTGGCAGCAAGATCTTGCGTATTCTTA
AAGCTCACGGGCTTGCACCGGAGATTCCTGAGGATCTCTATCATTTGATTAAGAAAGCTGTCTCGATTAGAAAGCATTTGGAAAGGAATAGGAAGGACAAGGACTCAAAG
TTCAGGTTGATTCTTGTGGAGAGCAGGATTCACCGGCTCGCCCGCTATTACAAGAAGACCAAGAAGCTCCCACCTGTTTGGAAA
mRNA sequenceShow/hide mRNA sequence
TCCGTTTGTGGTTGCAGAAAAGGTATTTCGGCTTCGGCATTGCCGTACAAGAGGACTCCACCCAGTTGGCTCAAGATTTCTTCTCAAGATGTTGATGAAAACATCTGCAA
GTTTGCGAAGAAGGGTTTGACTCCGTCTCAGATCGGTGTGATTCTTCGTGATTCTCATGGTATTGCTCAGGTCAAGAGCGTTACTGGCAGCAAGATCTTGCGTATTCTTA
AAGCTCACGGGCTTGCACCGGAGATTCCTGAGGATCTCTATCATTTGATTAAGAAAGCTGTCTCGATTAGAAAGCATTTGGAAAGGAATAGGAAGGACAAGGACTCAAAG
TTCAGGTTGATTCTTGTGGAGAGCAGGATTCACCGGCTCGCCCGCTATTACAAGAAGACCAAGAAGCTCCCACCTGTTTGGAAA
Protein sequenceShow/hide protein sequence
SVCGCRKGISASALPYKRTPPSWLKISSQDVDENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSK
FRLILVESRIHRLARYYKKTKKLPPVWK