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MS012922 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS012922
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionAuxin-responsive protein
Genome locationscaffold38:471063..471455
RNA-Seq ExpressionMS012922
SyntenyMS012922
Gene Ontology termsGO:0009733 - response to auxin (biological process)
InterPro domainsIPR003676 - Small auxin-up RNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6577610.1 Auxin-responsive protein SAUR36, partial [Cucurbita argyrosperma subsp. sororia]5.0e-3464.66Show/hide
Query:  MRRSRGFSLKIKLLKIFKWRT--NPFSNLLALARRSLKTPPKTLSYSRGSGYIRMGGVWADP-AVAPKGYLAVHVGGSEHETERRLVPVLYFNHPMFGKL
        MR ++GF LKIKL KIFK RT  NPFS L ALA         T S+SR   Y R+  V   P A APKGYLAVHVGG+E E ER LVP++YFNHPMFGKL
Subjt:  MRRSRGFSLKIKLLKIFKWRT--NPFSNLLALARRSLKTPPKTLSYSRGSGYIRMGGVWADP-AVAPKGYLAVHVGGSEHETERRLVPVLYFNHPMFGKL

Query:  LDAAERIYGFDYPGRITIPCHVSEFEEVNRSIA
        L AAERIYGF YPGRI IP  VSEFEEV   IA
Subjt:  LDAAERIYGFDYPGRITIPCHVSEFEEVNRSIA

KAG6596841.1 Auxin-responsive protein SAUR36, partial [Cucurbita argyrosperma subsp. sororia]1.3e-3461.7Show/hide
Query:  MRRSRGFSLKIKLLKIFKW----------RTNPFSNLLALARRSLKTPPKTLSYSRGSGYIRMGGVWADPAVAPKGYLAVHVGGSEHETERRLVPVLYFN
        MRR+RGF LKIKLLKIFK            +NPFSNL +LA         T S+SR  GY R+    + P   PKGYLAVHVGG E +TE  LVPV+YFN
Subjt:  MRRSRGFSLKIKLLKIFKW----------RTNPFSNLLALARRSLKTPPKTLSYSRGSGYIRMGGVWADPAVAPKGYLAVHVGGSEHETERRLVPVLYFN

Query:  HPMFGKLLDAAERIYGFDYPGRITIPCHVSEFEEVNRSIAA
        HPMFGKLL AAERIYGFDYPGRI IP  VSEFEEV   IAA
Subjt:  HPMFGKLLDAAERIYGFDYPGRITIPCHVSEFEEVNRSIAA

TYK19488.1 auxin-responsive protein SAUR32 [Cucumis melo var. makuwa]1.1e-3664.29Show/hide
Query:  RRSRGFSLKIKLLKIFKWRT---------NPFSNLLALARRSLKTPPKTLSYSRGSGYIRMGGVWADPAVA-PKGYLAVHVGGSEHETERRLVPVLYFNH
        RR++GF LKIKLLKIFKWRT         NPFS L +LA         T  +SR  GY R+  V + PAVA PKGYLAVHVGG E ETER LVPV+YFNH
Subjt:  RRSRGFSLKIKLLKIFKWRT---------NPFSNLLALARRSLKTPPKTLSYSRGSGYIRMGGVWADPAVA-PKGYLAVHVGGSEHETERRLVPVLYFNH

Query:  PMFGKLLDAAERIYGFDYPGRITIPCHVSEFEEVNRSIAA
        PMF KLL AAE IYGFDYPGRI IP  VSEFEEV   IAA
Subjt:  PMFGKLLDAAERIYGFDYPGRITIPCHVSEFEEVNRSIAA

XP_008448892.1 PREDICTED: auxin-responsive protein SAUR32 [Cucumis melo]1.1e-3664.29Show/hide
Query:  RRSRGFSLKIKLLKIFKWRT---------NPFSNLLALARRSLKTPPKTLSYSRGSGYIRMGGVWADPAVA-PKGYLAVHVGGSEHETERRLVPVLYFNH
        RR++GF LKIKLLKIFKWRT         NPFS L +LA         T  +SR  GY R+  V + PAVA PKGYLAVHVGG E ETER LVPV+YFNH
Subjt:  RRSRGFSLKIKLLKIFKWRT---------NPFSNLLALARRSLKTPPKTLSYSRGSGYIRMGGVWADPAVA-PKGYLAVHVGGSEHETERRLVPVLYFNH

Query:  PMFGKLLDAAERIYGFDYPGRITIPCHVSEFEEVNRSIAA
        PMF KLL AAE IYGFDYPGRI IP  VSEFEEV   IAA
Subjt:  PMFGKLLDAAERIYGFDYPGRITIPCHVSEFEEVNRSIAA

XP_022946182.1 auxin-responsive protein SAUR36-like [Cucurbita moschata]2.9e-3461.7Show/hide
Query:  MRRSRGFSLKIKLLKIFKW----------RTNPFSNLLALARRSLKTPPKTLSYSRGSGYIRMGGVWADPAVAPKGYLAVHVGGSEHETERRLVPVLYFN
        MRR RGF LKIKLLKIFK            +NPFSNL +LA         T S+SR  GY R+    + P   PKGYLAVHVGG E +TE  LVPV+YFN
Subjt:  MRRSRGFSLKIKLLKIFKW----------RTNPFSNLLALARRSLKTPPKTLSYSRGSGYIRMGGVWADPAVAPKGYLAVHVGGSEHETERRLVPVLYFN

Query:  HPMFGKLLDAAERIYGFDYPGRITIPCHVSEFEEVNRSIAA
        HPMFGKLL AAERIYGFDYPGRI IP  VSEFEEV   IAA
Subjt:  HPMFGKLLDAAERIYGFDYPGRITIPCHVSEFEEVNRSIAA

TrEMBL top hitse value%identityAlignment
A0A0A0L5M2 Uncharacterized protein1.2e-3360Show/hide
Query:  RRSRGFSLKIKLLKIFKWRT---------NPFSNLLALARRSLKTPPKTLSYSRGSGYIRMGGVWADPAVA-PKGYLAVHVGGSEHETERRLVPVLYFNH
        R ++GF LK+KLLK+FKWRT         NPFS L +LA         T  +SR   Y R+  V + P VA PKGYLAVHVGG E+E ER LVPV+YFNH
Subjt:  RRSRGFSLKIKLLKIFKWRT---------NPFSNLLALARRSLKTPPKTLSYSRGSGYIRMGGVWADPAVA-PKGYLAVHVGGSEHETERRLVPVLYFNH

Query:  PMFGKLLDAAERIYGFDYPGRITIPCHVSEFEEVNRSIAA
        PMF KLL AAE IYGFDYPGRI IP  VSEFEEV   IAA
Subjt:  PMFGKLLDAAERIYGFDYPGRITIPCHVSEFEEVNRSIAA

A0A1S3BLN7 auxin-responsive protein SAUR325.2e-3764.29Show/hide
Query:  RRSRGFSLKIKLLKIFKWRT---------NPFSNLLALARRSLKTPPKTLSYSRGSGYIRMGGVWADPAVA-PKGYLAVHVGGSEHETERRLVPVLYFNH
        RR++GF LKIKLLKIFKWRT         NPFS L +LA         T  +SR  GY R+  V + PAVA PKGYLAVHVGG E ETER LVPV+YFNH
Subjt:  RRSRGFSLKIKLLKIFKWRT---------NPFSNLLALARRSLKTPPKTLSYSRGSGYIRMGGVWADPAVA-PKGYLAVHVGGSEHETERRLVPVLYFNH

Query:  PMFGKLLDAAERIYGFDYPGRITIPCHVSEFEEVNRSIAA
        PMF KLL AAE IYGFDYPGRI IP  VSEFEEV   IAA
Subjt:  PMFGKLLDAAERIYGFDYPGRITIPCHVSEFEEVNRSIAA

A0A5D3D7D7 Auxin-responsive protein SAUR325.2e-3764.29Show/hide
Query:  RRSRGFSLKIKLLKIFKWRT---------NPFSNLLALARRSLKTPPKTLSYSRGSGYIRMGGVWADPAVA-PKGYLAVHVGGSEHETERRLVPVLYFNH
        RR++GF LKIKLLKIFKWRT         NPFS L +LA         T  +SR  GY R+  V + PAVA PKGYLAVHVGG E ETER LVPV+YFNH
Subjt:  RRSRGFSLKIKLLKIFKWRT---------NPFSNLLALARRSLKTPPKTLSYSRGSGYIRMGGVWADPAVA-PKGYLAVHVGGSEHETERRLVPVLYFNH

Query:  PMFGKLLDAAERIYGFDYPGRITIPCHVSEFEEVNRSIAA
        PMF KLL AAE IYGFDYPGRI IP  VSEFEEV   IAA
Subjt:  PMFGKLLDAAERIYGFDYPGRITIPCHVSEFEEVNRSIAA

A0A6J1EBA0 auxin-responsive protein SAUR32-like9.2e-3463.91Show/hide
Query:  MRRSRGFSLKIKLLKIFKWRT--NPFSNLLALARRSLKTPPKTLSYSRGSGYIRMGGVWADP-AVAPKGYLAVHVGGSEHETERRLVPVLYFNHPMFGKL
        MR ++GF LKIKL  IFK RT  NPFS L ALA         T S+SR   Y R+  V   P A APKGYLAVHVGG+E E ER LVP++YFNHPMFGKL
Subjt:  MRRSRGFSLKIKLLKIFKWRT--NPFSNLLALARRSLKTPPKTLSYSRGSGYIRMGGVWADP-AVAPKGYLAVHVGGSEHETERRLVPVLYFNHPMFGKL

Query:  LDAAERIYGFDYPGRITIPCHVSEFEEVNRSIA
        L AAERIYGF YPGRI IP  VSEFEEV   IA
Subjt:  LDAAERIYGFDYPGRITIPCHVSEFEEVNRSIA

A0A6J1G318 auxin-responsive protein SAUR36-like1.4e-3461.7Show/hide
Query:  MRRSRGFSLKIKLLKIFKW----------RTNPFSNLLALARRSLKTPPKTLSYSRGSGYIRMGGVWADPAVAPKGYLAVHVGGSEHETERRLVPVLYFN
        MRR RGF LKIKLLKIFK            +NPFSNL +LA         T S+SR  GY R+    + P   PKGYLAVHVGG E +TE  LVPV+YFN
Subjt:  MRRSRGFSLKIKLLKIFKW----------RTNPFSNLLALARRSLKTPPKTLSYSRGSGYIRMGGVWADPAVAPKGYLAVHVGGSEHETERRLVPVLYFN

Query:  HPMFGKLLDAAERIYGFDYPGRITIPCHVSEFEEVNRSIAA
        HPMFGKLL AAERIYGFDYPGRI IP  VSEFEEV   IAA
Subjt:  HPMFGKLLDAAERIYGFDYPGRITIPCHVSEFEEVNRSIAA

SwissProt top hitse value%identityAlignment
O22150 Auxin-responsive protein SAUR364.4e-1749.43Show/hide
Query:  SRGSGYIRMGGVWADPAVAPKGYLAVHVGGSEHETERRLVPVLYFNHPMFGKLLDAAERIYGFDYPGRITIPCHVSEFEEVNRSIAA
        +R S YI +    ADP   P+G+LA++VG  + +  R LVP++YFNHP+FG+LL  AE+ YGF + G ITIPC  S+FE V   IA+
Subjt:  SRGSGYIRMGGVWADPAVAPKGYLAVHVGGSEHETERRLVPVLYFNHPMFGKLLDAAERIYGFDYPGRITIPCHVSEFEEVNRSIAA

Q41220 Auxin-responsive protein SAUR153.6e-1144.78Show/hide
Query:  PKGYLAVHVGGSEHETERRLVPVLYFNHPMFGKLLDAAERIYGFDYP-GRITIPCHVSEFEEVNRSI
        P+G++AV+VG ++ + +R +VPV Y N P+F +LL  +E  +G+D+P G +TIPCH S F  V   I
Subjt:  PKGYLAVHVGGSEHETERRLVPVLYFNHPMFGKLLDAAERIYGFDYP-GRITIPCHVSEFEEVNRSI

Q9LTV3 Auxin-responsive protein SAUR727.1e-0739.39Show/hide
Query:  PKGYLAVHVGGSEHETERRLVPVLYFNHPMFGKLLDAAERIYGFDYPGRITIPCHVSEFEEVNRSI
        P+G++ V+VG    E ER +V     NHP+F  LL+ + + YG++  G + IPCHV  FE +  S+
Subjt:  PKGYLAVHVGGSEHETERRLVPVLYFNHPMFGKLLDAAERIYGFDYPGRITIPCHVSEFEEVNRSI

Q9SGU2 Auxin-responsive protein SAUR711.1e-0740.91Show/hide
Query:  PKGYLAVHVGGSEHETERRLVPVLYFNHPMFGKLLDAAERIYGFDYPGRITIPCHVSEFEEVNRSI
        P+G++ V+VG   HE ER +V     NHP+F  LL  + + YG++  G + IPCHV  FE +  S+
Subjt:  PKGYLAVHVGGSEHETERRLVPVLYFNHPMFGKLLDAAERIYGFDYPGRITIPCHVSEFEEVNRSI

Q9ZUZ3 Auxin-responsive protein SAUR321.4e-1559.09Show/hide
Query:  PKGYLAVHVGGSEHETERRLVPVLYFNHPMFGKLLDAAERIYGFDYPGRITIPCHVSEFEEVNRSI
        PKG LA+ VG    E +R +VPVLYFNHP+F +LL  AE  YGFD  G ITIPCHV EF  V   I
Subjt:  PKGYLAVHVGGSEHETERRLVPVLYFNHPMFGKLLDAAERIYGFDYPGRITIPCHVSEFEEVNRSI

Arabidopsis top hitse value%identityAlignment
AT2G45210.1 SAUR-like auxin-responsive protein family3.1e-1849.43Show/hide
Query:  SRGSGYIRMGGVWADPAVAPKGYLAVHVGGSEHETERRLVPVLYFNHPMFGKLLDAAERIYGFDYPGRITIPCHVSEFEEVNRSIAA
        +R S YI +    ADP   P+G+LA++VG  + +  R LVP++YFNHP+FG+LL  AE+ YGF + G ITIPC  S+FE V   IA+
Subjt:  SRGSGYIRMGGVWADPAVAPKGYLAVHVGGSEHETERRLVPVLYFNHPMFGKLLDAAERIYGFDYPGRITIPCHVSEFEEVNRSIAA

AT2G46690.1 SAUR-like auxin-responsive protein family1.0e-1659.09Show/hide
Query:  PKGYLAVHVGGSEHETERRLVPVLYFNHPMFGKLLDAAERIYGFDYPGRITIPCHVSEFEEVNRSI
        PKG LA+ VG    E +R +VPVLYFNHP+F +LL  AE  YGFD  G ITIPCHV EF  V   I
Subjt:  PKGYLAVHVGGSEHETERRLVPVLYFNHPMFGKLLDAAERIYGFDYPGRITIPCHVSEFEEVNRSI

AT3G60690.1 SAUR-like auxin-responsive protein family2.9e-1646.43Show/hide
Query:  SGYIRMG--GVWADPAVAPKGYLAVHVGGSEHETERRLVPVLYFNHPMFGKLLDAAERIYGFDYPGRITIPCHVSEFEEVNRSI
        SGYI +G   +   P   PKG+ AV++G  + + +R LVP++YFNHP+FG+LL  AE  +GF   G ITIPC  S+F+ V   I
Subjt:  SGYIRMG--GVWADPAVAPKGYLAVHVGGSEHETERRLVPVLYFNHPMFGKLLDAAERIYGFDYPGRITIPCHVSEFEEVNRSI

AT4G12410.1 SAUR-like auxin-responsive protein family8.8e-2946.26Show/hide
Query:  MRRSRGFSLKIKLLKIFKW---------RTNPFSNLLALARRSLKTPPKTLSYSR---GSGYIRMGGVWADP----AVAPKGYLAVHVGGSEHETERRLV
        M+R RGF +  + +KIFKW          TNP + + +LAR   +   +    S+   G   IR+G    DP     V P+G+L VHVG S+ +T R +V
Subjt:  MRRSRGFSLKIKLLKIFKW---------RTNPFSNLLALARRSLKTPPKTLSYSR---GSGYIRMGGVWADP----AVAPKGYLAVHVGGSEHETERRLV

Query:  PVLYFNHPMFGKLLDAAERIYGFDYPGRITIPCHVSEFEEVNRSIAA
        PV+YFNHP+FG+LL+ AER++GFD PGRITIPC VS+FE+V   IAA
Subjt:  PVLYFNHPMFGKLLDAAERIYGFDYPGRITIPCHVSEFEEVNRSIAA

AT4G22620.1 SAUR-like auxin-responsive protein family8.8e-2944.59Show/hide
Query:  MRRSRGFSLKIKLLKIFKW-----------------RTNPFSNLLALARRSLKTPPKTLSYSRGSGYIRMGGVWADPAVAPKGYLAVHVGGSEHETERRL
        M+R RGF +  + +KIFKW                   NP + + +LARR L+     L      G  R+G     P V P+G+L VHVG S  +T R +
Subjt:  MRRSRGFSLKIKLLKIFKW-----------------RTNPFSNLLALARRSLKTPPKTLSYSRGSGYIRMGGVWADPAVAPKGYLAVHVGGSEHETERRL

Query:  VPVLYFNHPMFGKLLDAAERIYGFDYPGRITIPCHVSEFEEVNRSIAA
        VPV+YFNHP+FG+LL+ AER+YGF+ PGRI IPC VS+FE+V   IAA
Subjt:  VPVLYFNHPMFGKLLDAAERIYGFDYPGRITIPCHVSEFEEVNRSIAA


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCGAAGAAGCAGAGGTTTTAGCCTCAAAATCAAGCTGCTGAAGATCTTCAAATGGAGGACCAACCCCTTCTCCAACCTCCTCGCCCTGGCCCGCCGCTCCCTCAAAAC
CCCACCCAAAACGCTGTCGTATTCTCGCGGATCCGGGTACATCCGAATGGGCGGGGTCTGGGCAGACCCGGCGGTGGCCCCGAAGGGGTATTTGGCCGTCCACGTCGGCG
GGTCGGAGCACGAAACGGAGCGGCGTCTGGTGCCGGTGCTTTACTTCAACCATCCCATGTTCGGGAAATTGTTGGACGCGGCGGAGCGGATTTACGGGTTCGATTATCCG
GGTCGGATCACGATTCCGTGCCACGTGTCGGAGTTTGAGGAGGTCAACAGAAGTATAGCGGCG
mRNA sequenceShow/hide mRNA sequence
ATGCGAAGAAGCAGAGGTTTTAGCCTCAAAATCAAGCTGCTGAAGATCTTCAAATGGAGGACCAACCCCTTCTCCAACCTCCTCGCCCTGGCCCGCCGCTCCCTCAAAAC
CCCACCCAAAACGCTGTCGTATTCTCGCGGATCCGGGTACATCCGAATGGGCGGGGTCTGGGCAGACCCGGCGGTGGCCCCGAAGGGGTATTTGGCCGTCCACGTCGGCG
GGTCGGAGCACGAAACGGAGCGGCGTCTGGTGCCGGTGCTTTACTTCAACCATCCCATGTTCGGGAAATTGTTGGACGCGGCGGAGCGGATTTACGGGTTCGATTATCCG
GGTCGGATCACGATTCCGTGCCACGTGTCGGAGTTTGAGGAGGTCAACAGAAGTATAGCGGCG
Protein sequenceShow/hide protein sequence
MRRSRGFSLKIKLLKIFKWRTNPFSNLLALARRSLKTPPKTLSYSRGSGYIRMGGVWADPAVAPKGYLAVHVGGSEHETERRLVPVLYFNHPMFGKLLDAAERIYGFDYP
GRITIPCHVSEFEEVNRSIAA