; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MS012923 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS012923
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionReverse transcriptase domain-containing protein
Genome locationscaffold38:482892..483185
RNA-Seq ExpressionMS012923
SyntenyMS012923
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
CAB4278922.1 unnamed protein product [Prunus armeniaca]6.9e-1755.43Show/hide
Query:  TLIQSVLSSLPT-YLSVFRALAKITKALEQLMRNFLWEGNGNKRLSHLIRWDIVTLPKAGG--RIGNARLINSALLTKWMWRFLTENNSLWI
        TLIQ+VLSSLPT YLS+FR  A + K LE++MRNFLWEG    R  HL+ W++V+LPK  G   IGN R  N ALL KW+WRF     + W+
Subjt:  TLIQSVLSSLPT-YLSVFRALAKITKALEQLMRNFLWEGNGNKRLSHLIRWDIVTLPKAGG--RIGNARLINSALLTKWMWRFLTENNSLWI

KAA0046762.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]2.0e-1653.06Show/hide
Query:  TLIQSVLSSLPTY-LSVFRALAKITKALEQLMRNFLWEGNGNKRLSHLIRWDIVTLPKAGGRIGNAR--LINSALLTKWMWRFLTENNSLWISLIKAK
        TLI+S LSSLPTY LSVF+A +   K +E+  RNFLW+GN +    HLI W  VT  KA G +G +R  + N ALLTKW+WR+L+E  +LW  LI+ K
Subjt:  TLIQSVLSSLPTY-LSVFRALAKITKALEQLMRNFLWEGNGNKRLSHLIRWDIVTLPKAGGRIGNAR--LINSALLTKWMWRFLTENNSLWISLIKAK

TYK00226.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]2.8e-1850Show/hide
Query:  TLIQSVLSSLPTY-LSVFRALAKITKALEQLMRNFLWEGNGNKRLSHLIRWDIVTLPKAGGRIG--NARLINSALLTKWMWRFLTENNSLWISLIKAK
        TLIQ+ LSSLPTY LS+F+AL+ + K +E+  RNFLW+       ++L RW  +T PK  G +G  N ++IN+ALL KW+WRF  E +SLW+ +I AK
Subjt:  TLIQSVLSSLPTY-LSVFRALAKITKALEQLMRNFLWEGNGNKRLSHLIRWDIVTLPKAGGRIG--NARLINSALLTKWMWRFLTENNSLWISLIKAK

XP_028121753.1 uncharacterized protein LOC114318966 [Camellia sinensis]2.4e-1753.61Show/hide
Query:  LIQSVLSSLPTY-LSVFRALAKITKALEQLMRNFLWEGNGNKRLSHLIRWDIVTLPKAGG--RIGNARLINSALLTKWMWRFLTENNSLWISLIKAK
        L+QSVL S+P Y LS+F+    I + +E+LMR+FLWEG G     HL+RWD V+LPK  G   IGN    N ALL KW+WRF  E++SLW S+IK+K
Subjt:  LIQSVLSSLPTY-LSVFRALAKITKALEQLMRNFLWEGNGNKRLSHLIRWDIVTLPKAGG--RIGNARLINSALLTKWMWRFLTENNSLWISLIKAK

XP_030497604.1 uncharacterized protein LOC115713262 [Cannabis sativa]9.0e-1753.06Show/hide
Query:  TLIQSVLSSLPTY-LSVFRALAKITKALEQLMRNFLWEGNGNKRLSHLIRWDIVTLPKAGG--RIGNARLINSALLTKWMWRFLTENNSLWISLIKAK
        TLIQSVLSS P Y LS+F+A   +TKALE+LMR+FLWEG  +    HL+ WD V  P+  G   IGN  L N  LL KW+WRF  E NSLW  ++ ++
Subjt:  TLIQSVLSSLPTY-LSVFRALAKITKALEQLMRNFLWEGNGNKRLSHLIRWDIVTLPKAGG--RIGNARLINSALLTKWMWRFLTENNSLWISLIKAK

TrEMBL top hitse value%identityAlignment
A0A5A7TTK1 LINE-1 retrotransposable element ORF2 protein9.7e-1753.06Show/hide
Query:  TLIQSVLSSLPTY-LSVFRALAKITKALEQLMRNFLWEGNGNKRLSHLIRWDIVTLPKAGGRIGNAR--LINSALLTKWMWRFLTENNSLWISLIKAK
        TLI+S LSSLPTY LSVF+A +   K +E+  RNFLW+GN +    HLI W  VT  KA G +G +R  + N ALLTKW+WR+L+E  +LW  LI+ K
Subjt:  TLIQSVLSSLPTY-LSVFRALAKITKALEQLMRNFLWEGNGNKRLSHLIRWDIVTLPKAGGRIGNAR--LINSALLTKWMWRFLTENNSLWISLIKAK

A0A5D3BPP1 LINE-1 retrotransposable element ORF2 protein1.3e-1850Show/hide
Query:  TLIQSVLSSLPTY-LSVFRALAKITKALEQLMRNFLWEGNGNKRLSHLIRWDIVTLPKAGGRIG--NARLINSALLTKWMWRFLTENNSLWISLIKAK
        TLIQ+ LSSLPTY LS+F+AL+ + K +E+  RNFLW+       ++L RW  +T PK  G +G  N ++IN+ALL KW+WRF  E +SLW+ +I AK
Subjt:  TLIQSVLSSLPTY-LSVFRALAKITKALEQLMRNFLWEGNGNKRLSHLIRWDIVTLPKAGGRIG--NARLINSALLTKWMWRFLTENNSLWISLIKAK

A0A5D3BVM7 LINE-1 retrotransposable element ORF2 protein1.3e-1653.06Show/hide
Query:  TLIQSVLSSLPTY-LSVFRALAKITKALEQLMRNFLWEGNGNKRLSHLIRWDIVTLPKAGGRIGNARL--INSALLTKWMWRFLTENNSLWISLIKAK
        TLI+S LSSLP Y LSVF+A +   K +E+  RNFLW+GN     SHLI W  V+  K  G +G +RL   N ALLTKW+WR+L+E N+LW  LI+ K
Subjt:  TLIQSVLSSLPTY-LSVFRALAKITKALEQLMRNFLWEGNGNKRLSHLIRWDIVTLPKAGGRIGNARL--INSALLTKWMWRFLTENNSLWISLIKAK

A0A6J5XET8 Uncharacterized protein3.3e-1755.43Show/hide
Query:  TLIQSVLSSLPT-YLSVFRALAKITKALEQLMRNFLWEGNGNKRLSHLIRWDIVTLPKAGG--RIGNARLINSALLTKWMWRFLTENNSLWI
        TLIQ+VLSSLPT YLS+FR  A + K LE++MRNFLWEG    R  HL+ W++V+LPK  G   IGN R  N ALL KW+WRF     + W+
Subjt:  TLIQSVLSSLPT-YLSVFRALAKITKALEQLMRNFLWEGNGNKRLSHLIRWDIVTLPKAGG--RIGNARLINSALLTKWMWRFLTENNSLWI

A0A803P465 Uncharacterized protein4.3e-1752.04Show/hide
Query:  TLIQSVLSSLPTY-LSVFRALAKITKALEQLMRNFLWEGNGNKRLSHLIRWDIVTLPKAGGRIGNAR--LINSALLTKWMWRFLTENNSLWISLIKAK
        TLIQSVLSSLP Y LS+F+A   +TKALE++MR+FLWEG+ +    HL+ WD V  P+  G +G  R  L N +LL KW+WRF  E NSLW  ++ ++
Subjt:  TLIQSVLSSLPTY-LSVFRALAKITKALEQLMRNFLWEGNGNKRLSHLIRWDIVTLPKAGGRIGNAR--LINSALLTKWMWRFLTENNSLWISLIKAK

SwissProt top hitse value%identityAlignment
P0C2F6 Putative ribonuclease H protein At1g657509.0e-1239.8Show/hide
Query:  TLIQSVLSSLPTY-LSVFRALAKITKALEQLMRNFLWEGNGNKRLSHLIRWDIVTLPKAGGRIG--NARLINSALLTKWMWRFLTENNSLWISLIKAK
        TL ++VLSS+P + +S       I   L+QL R FLW     K+  HL++W  V  PK  G +G   A+ +N AL++K  WR L E NSLW  +++ K
Subjt:  TLIQSVLSSLPTY-LSVFRALAKITKALEQLMRNFLWEGNGNKRLSHLIRWDIVTLPKAGGRIG--NARLINSALLTKWMWRFLTENNSLWISLIKAK

Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ACACTAATCCAATCTGTTTTAAGTAGTCTGCCTACCTATCTCTCGGTCTTCCGAGCTCTTGCTAAAATCACCAAGGCTCTTGAACAGCTGATGAGGAATTTCTTATGGGA
AGGCAATGGAAACAAAAGGCTCTCTCATCTCATCCGTTGGGACATTGTGACTCTTCCAAAAGCCGGTGGTCGAATTGGCAATGCTAGACTCATCAATTCGGCTCTTCTGA
CTAAATGGATGTGGAGATTTTTAACAGAGAATAATAGTTTATGGATTTCATTGATTAAAGCCAAA
mRNA sequenceShow/hide mRNA sequence
ACACTAATCCAATCTGTTTTAAGTAGTCTGCCTACCTATCTCTCGGTCTTCCGAGCTCTTGCTAAAATCACCAAGGCTCTTGAACAGCTGATGAGGAATTTCTTATGGGA
AGGCAATGGAAACAAAAGGCTCTCTCATCTCATCCGTTGGGACATTGTGACTCTTCCAAAAGCCGGTGGTCGAATTGGCAATGCTAGACTCATCAATTCGGCTCTTCTGA
CTAAATGGATGTGGAGATTTTTAACAGAGAATAATAGTTTATGGATTTCATTGATTAAAGCCAAA
Protein sequenceShow/hide protein sequence
TLIQSVLSSLPTYLSVFRALAKITKALEQLMRNFLWEGNGNKRLSHLIRWDIVTLPKAGGRIGNARLINSALLTKWMWRFLTENNSLWISLIKAK