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MS012935 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS012935
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionRetrotran_gag_3 domain-containing protein
Genome locationscaffold38:643520..643801
RNA-Seq ExpressionMS012935
SyntenyMS012935
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0056771.1 putative mitochondrial protein [Cucumis melo var. makuwa]2.4e-1152.63Show/hide
Query:  IFLLSNICNLVLVRLDS-NFRSRRFNVVAILKAHS-FGHIDSSVSV-PKFIRARALKTLSE---SFLKWSPRDRTLITLINVTLSPPTFGHTVGS
        +FLLSNICNLV +RLDS N+   ++ V +ILKAHS FGHID ++   PK + +  L T SE    +L+W  RD+ LITLIN TLS     H VGS
Subjt:  IFLLSNICNLVLVRLDS-NFRSRRFNVVAILKAHS-FGHIDSSVSV-PKFIRARALKTLSE---SFLKWSPRDRTLITLINVTLSPPTFGHTVGS

KAA0067173.1 retrotransposon protein [Cucumis melo var. makuwa]3.2e-1151.55Show/hide
Query:  IFLLSNICNLVLVRLDS-NFRSRRFNVVAILKAHS-FGHIDSSVSV-PKFIRARALKTLSE---SFLKWSPRDRTLITLINVTLSPPTFGHTVGSSS
        +FLLSNICNLV +RLDS N+   ++ V +ILKAHS FGHID ++   PK + +  L T SE    +L+W  R + LITLIN TLS     H VGS S
Subjt:  IFLLSNICNLVLVRLDS-NFRSRRFNVVAILKAHS-FGHIDSSVSV-PKFIRARALKTLSE---SFLKWSPRDRTLITLINVTLSPPTFGHTVGSSS

KGN50818.1 hypothetical protein Csa_018838 [Cucumis sativus]3.2e-1152.58Show/hide
Query:  IFLLSNICNLVLVRLDS-NFRSRRFNVVAILKAH-SFGHIDSSVSV-PKFIRARALKT---LSESFLKWSPRDRTLITLINVTLSPPTFGHTVGSSS
        +FLLSNICN V +RLDS N+   ++ V +ILKAH  FGHID S S  PKF+ +    T    S   L W  RD+ LITLIN TLSP    H VGS S
Subjt:  IFLLSNICNLVLVRLDS-NFRSRRFNVVAILKAH-SFGHIDSSVSV-PKFIRARALKT---LSESFLKWSPRDRTLITLINVTLSPPTFGHTVGSSS

TYJ97594.1 putative mitochondrial protein [Cucumis melo var. makuwa]2.4e-1152.63Show/hide
Query:  IFLLSNICNLVLVRLDS-NFRSRRFNVVAILKAHS-FGHIDSSVSV-PKFIRARALKTLSE---SFLKWSPRDRTLITLINVTLSPPTFGHTVGS
        +FLLSNICNLV +RLDS N+   ++ V +ILKAHS FGHID ++   PK + +  L T SE    +L+W  RD+ LITLIN TLS     H VGS
Subjt:  IFLLSNICNLVLVRLDS-NFRSRRFNVVAILKAHS-FGHIDSSVSV-PKFIRARALKTLSE---SFLKWSPRDRTLITLINVTLSPPTFGHTVGS

TYK11141.1 putative mitochondrial protein [Cucumis melo var. makuwa]1.9e-1151.55Show/hide
Query:  IFLLSNICNLVLVRLDS-NFRSRRFNVVAILKAHS-FGHIDSSVSV-PKFIRARALKTLSE---SFLKWSPRDRTLITLINVTLSPPTFGHTVGSSS
        +FLLSNICNLV +RLDS N+   ++ V +ILKAHS FGHID ++   PK   +  L+T SE    +++W  RD+ LITLIN TLS     H VGS S
Subjt:  IFLLSNICNLVLVRLDS-NFRSRRFNVVAILKAHS-FGHIDSSVSV-PKFIRARALKTLSE---SFLKWSPRDRTLITLINVTLSPPTFGHTVGSSS

TrEMBL top hitse value%identityAlignment
A0A0A0KMJ5 Uncharacterized protein1.5e-1152.58Show/hide
Query:  IFLLSNICNLVLVRLDS-NFRSRRFNVVAILKAH-SFGHIDSSVSV-PKFIRARALKT---LSESFLKWSPRDRTLITLINVTLSPPTFGHTVGSSS
        +FLLSNICN V +RLDS N+   ++ V +ILKAH  FGHID S S  PKF+ +    T    S   L W  RD+ LITLIN TLSP    H VGS S
Subjt:  IFLLSNICNLVLVRLDS-NFRSRRFNVVAILKAH-SFGHIDSSVSV-PKFIRARALKT---LSESFLKWSPRDRTLITLINVTLSPPTFGHTVGSSS

A0A5A7UTE5 Putative mitochondrial protein1.2e-1152.63Show/hide
Query:  IFLLSNICNLVLVRLDS-NFRSRRFNVVAILKAHS-FGHIDSSVSV-PKFIRARALKTLSE---SFLKWSPRDRTLITLINVTLSPPTFGHTVGS
        +FLLSNICNLV +RLDS N+   ++ V +ILKAHS FGHID ++   PK + +  L T SE    +L+W  RD+ LITLIN TLS     H VGS
Subjt:  IFLLSNICNLVLVRLDS-NFRSRRFNVVAILKAHS-FGHIDSSVSV-PKFIRARALKTLSE---SFLKWSPRDRTLITLINVTLSPPTFGHTVGS

A0A5A7VGG0 Retrotransposon protein1.5e-1151.55Show/hide
Query:  IFLLSNICNLVLVRLDS-NFRSRRFNVVAILKAHS-FGHIDSSVSV-PKFIRARALKTLSE---SFLKWSPRDRTLITLINVTLSPPTFGHTVGSSS
        +FLLSNICNLV +RLDS N+   ++ V +ILKAHS FGHID ++   PK + +  L T SE    +L+W  R + LITLIN TLS     H VGS S
Subjt:  IFLLSNICNLVLVRLDS-NFRSRRFNVVAILKAHS-FGHIDSSVSV-PKFIRARALKTLSE---SFLKWSPRDRTLITLINVTLSPPTFGHTVGSSS

A0A5D3BEU0 Putative mitochondrial protein1.2e-1152.63Show/hide
Query:  IFLLSNICNLVLVRLDS-NFRSRRFNVVAILKAHS-FGHIDSSVSV-PKFIRARALKTLSE---SFLKWSPRDRTLITLINVTLSPPTFGHTVGS
        +FLLSNICNLV +RLDS N+   ++ V +ILKAHS FGHID ++   PK + +  L T SE    +L+W  RD+ LITLIN TLS     H VGS
Subjt:  IFLLSNICNLVLVRLDS-NFRSRRFNVVAILKAHS-FGHIDSSVSV-PKFIRARALKTLSE---SFLKWSPRDRTLITLINVTLSPPTFGHTVGS

A0A5D3CH60 Putative mitochondrial protein9.0e-1251.55Show/hide
Query:  IFLLSNICNLVLVRLDS-NFRSRRFNVVAILKAHS-FGHIDSSVSV-PKFIRARALKTLSE---SFLKWSPRDRTLITLINVTLSPPTFGHTVGSSS
        +FLLSNICNLV +RLDS N+   ++ V +ILKAHS FGHID ++   PK   +  L+T SE    +++W  RD+ LITLIN TLS     H VGS S
Subjt:  IFLLSNICNLVLVRLDS-NFRSRRFNVVAILKAHS-FGHIDSSVSV-PKFIRARALKTLSE---SFLKWSPRDRTLITLINVTLSPPTFGHTVGSSS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATTTTCTTACTTTCTAATATTTGTAATTTGGTTTTAGTGAGGTTGGATTCCAATTTTAGATCTCGAAGATTTAATGTGGTTGCAATCTTGAAGGCTCACTCCTTTGGACA
TATTGACAGTTCAGTTTCAGTACCAAAATTTATTCGGGCTAGAGCTCTAAAAACTCTCAGTGAAAGTTTCCTCAAATGGAGCCCACGTGACCGGACCTTAATCACTCTAA
TTAACGTGACTCTTTCTCCGCCTACCTTTGGTCACACTGTTGGCTCTTCTTCC
mRNA sequenceShow/hide mRNA sequence
ATTTTCTTACTTTCTAATATTTGTAATTTGGTTTTAGTGAGGTTGGATTCCAATTTTAGATCTCGAAGATTTAATGTGGTTGCAATCTTGAAGGCTCACTCCTTTGGACA
TATTGACAGTTCAGTTTCAGTACCAAAATTTATTCGGGCTAGAGCTCTAAAAACTCTCAGTGAAAGTTTCCTCAAATGGAGCCCACGTGACCGGACCTTAATCACTCTAA
TTAACGTGACTCTTTCTCCGCCTACCTTTGGTCACACTGTTGGCTCTTCTTCC
Protein sequenceShow/hide protein sequence
IFLLSNICNLVLVRLDSNFRSRRFNVVAILKAHSFGHIDSSVSVPKFIRARALKTLSESFLKWSPRDRTLITLINVTLSPPTFGHTVGSSS