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MS012945 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS012945
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Description(-)-germacrene D synthase-like
Genome locationscaffold38:783116..783232
RNA-Seq ExpressionMS012945
SyntenyMS012945
Gene Ontology termsGO:0016102 - diterpenoid biosynthetic process (biological process)
GO:0000287 - magnesium ion binding (molecular function)
GO:0010333 - terpene synthase activity (molecular function)
InterPro domainsIPR008949 - Isoprenoid synthase domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
TYK12013.1 uncharacterized protein E5676_scaffold1017G00220 [Cucumis melo var. makuwa]4.7e-0456.41Show/hide
Query:  ASDIQCYMIQNNVSKNEVVRELKKQITNSWKEIIEDFVQ
        AS ++CYMIQ NV + E  +EL+KQ+TN+WK+IIED+++
Subjt:  ASDIQCYMIQNNVSKNEVVRELKKQITNSWKEIIEDFVQ
XP_008448865.1 PREDICTED: (-)-germacrene D synthase-like [Cucumis melo]4.7e-0456.41Show/hide
Query:  ASDIQCYMIQNNVSKNEVVRELKKQITNSWKEIIEDFVQ
        AS ++CYMIQ NV + E  +EL+KQ+TN+WK+IIED+++
Subjt:  ASDIQCYMIQNNVSKNEVVRELKKQITNSWKEIIEDFVQ
XP_022154019.1 (-)-germacrene D synthase-like [Momordica charantia]1.1e-0571.79Show/hide
Query:  ASDIQCYMIQNNVSKNEVVRELKKQITNSWKEIIEDFVQ
        AS I+CYM Q +VS+ E V ELKKQ+TNSWKEIIEDFV+
Subjt:  ASDIQCYMIQNNVSKNEVVRELKKQITNSWKEIIEDFVQ
XP_022154020.1 (+)-gamma-cadinene synthase-like [Momordica charantia]5.5e-0566.67Show/hide
Query:  ASDIQCYMIQNNVSKNEVVRELKKQITNSWKEIIEDFVQ
        AS ++CYM Q +VS+ E  REL  Q+TNSWKEIIEDFVQ
Subjt:  ASDIQCYMIQNNVSKNEVVRELKKQITNSWKEIIEDFVQ
TrEMBL top hitse value%identityAlignment
A0A1S3BLL1 (-)-germacrene D synthase-like2.3e-0456.41Show/hide
Query:  ASDIQCYMIQNNVSKNEVVRELKKQITNSWKEIIEDFVQ
        AS ++CYMIQ NV + E  +EL+KQ+TN+WK+IIED+++
Subjt:  ASDIQCYMIQNNVSKNEVVRELKKQITNSWKEIIEDFVQ
A0A5D3CJ95 Uncharacterized protein2.3e-0456.41Show/hide
Query:  ASDIQCYMIQNNVSKNEVVRELKKQITNSWKEIIEDFVQ
        AS ++CYMIQ NV + E  +EL+KQ+TN+WK+IIED+++
Subjt:  ASDIQCYMIQNNVSKNEVVRELKKQITNSWKEIIEDFVQ
A0A6J1CQG9 (-)-germacrene D synthase-like8.6e-0458.97Show/hide
Query:  ASDIQCYMIQNNVSKNEVVRELKKQITNSWKEIIEDFVQ
        AS I+CYM Q  V++ E V EL++QIT++WK+IIED+VQ
Subjt:  ASDIQCYMIQNNVSKNEVVRELKKQITNSWKEIIEDFVQ
A0A6J1DIG3 (+)-gamma-cadinene synthase-like2.7e-0566.67Show/hide
Query:  ASDIQCYMIQNNVSKNEVVRELKKQITNSWKEIIEDFVQ
        AS ++CYM Q +VS+ E  REL  Q+TNSWKEIIEDFVQ
Subjt:  ASDIQCYMIQNNVSKNEVVRELKKQITNSWKEIIEDFVQ
A0A6J1DKT6 (-)-germacrene D synthase-like5.4e-0671.79Show/hide
Query:  ASDIQCYMIQNNVSKNEVVRELKKQITNSWKEIIEDFVQ
        AS I+CYM Q +VS+ E V ELKKQ+TNSWKEIIEDFV+
Subjt:  ASDIQCYMIQNNVSKNEVVRELKKQITNSWKEIIEDFVQ
SwissProt top hitse value%identityAlignment
J9R5V4 Valerena-4,7(11)-diene synthase8.3e-0450Show/hide
Query:  ASDIQCYMIQNNVSKNEVVRELKKQITNSWKEIIED
        AS ++CYM  NN +K EVV E  K+I+N+WK+I ++
Subjt:  ASDIQCYMIQNNVSKNEVVRELKKQITNSWKEIIED
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
GCTTCTGACATTCAATGCTATATGATACAAAATAATGTATCAAAAAATGAGGTTGTACGAGAATTGAAGAAGCAAATTACAAATAGTTGGAAGGAAATCATAGAAGATTT
CGTGCAA
mRNA sequenceShow/hide mRNA sequence
GCTTCTGACATTCAATGCTATATGATACAAAATAATGTATCAAAAAATGAGGTTGTACGAGAATTGAAGAAGCAAATTACAAATAGTTGGAAGGAAATCATAGAAGATTT
CGTGCAA
Protein sequenceShow/hide protein sequence
ASDIQCYMIQNNVSKNEVVRELKKQITNSWKEIIEDFVQ