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MS012948 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS012948
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Description(-)-germacrene D synthase-like
Genome locationscaffold38:805201..805401
RNA-Seq ExpressionMS012948
SyntenyMS012948
Gene Ontology termsGO:0016102 - diterpenoid biosynthetic process (biological process)
GO:0000287 - magnesium ion binding (molecular function)
GO:0010333 - terpene synthase activity (molecular function)
InterPro domainsIPR008949 - Isoprenoid synthase domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
TYK12013.1 uncharacterized protein E5676_scaffold1017G00220 [Cucumis melo var. makuwa]1.2e-1065.52Show/hide
Query:  EAIQEVTNGWKEIREDFMQSI--DVPYTTFMSVLNLARLSDVFYKDEDGYTYSNGKTK
        E  ++VTN WK+I ED+++S   DVP T F SVLNLARLSD FYKDEDGYT S G+TK
Subjt:  EAIQEVTNGWKEIREDFMQSI--DVPYTTFMSVLNLARLSDVFYKDEDGYTYSNGKTK

XP_008448865.1 PREDICTED: (-)-germacrene D synthase-like [Cucumis melo]1.2e-1065.52Show/hide
Query:  EAIQEVTNGWKEIREDFMQSI--DVPYTTFMSVLNLARLSDVFYKDEDGYTYSNGKTK
        E  ++VTN WK+I ED+++S   DVP T F SVLNLARLSD FYKDEDGYT S G+TK
Subjt:  EAIQEVTNGWKEIREDFMQSI--DVPYTTFMSVLNLARLSDVFYKDEDGYTYSNGKTK

XP_022154019.1 (-)-germacrene D synthase-like [Momordica charantia]1.8e-1677.59Show/hide
Query:  EAIQEVTNGWKEIREDFMQSIDVPYTTFMSVLNLARLSDVFYKDEDGYTYSNGKTKLI
        E  ++VTN WKEI EDF++SIDVP TTFM VLNLARLSD FYKDEDGYTYS+G+TKLI
Subjt:  EAIQEVTNGWKEIREDFMQSIDVPYTTFMSVLNLARLSDVFYKDEDGYTYSNGKTKLI

XP_022154020.1 (+)-gamma-cadinene synthase-like [Momordica charantia]1.0e-1476.27Show/hide
Query:  EAIQEVTNGWKEIREDFMQSIDVPYTT-FMSVLNLARLSDVFYKDEDGYTYSNGKTKLI
        E   +VTN WKEI EDF+QSIDVP TT FMSVLNLARLSD FYK +DGYTYS+G+TKLI
Subjt:  EAIQEVTNGWKEIREDFMQSIDVPYTT-FMSVLNLARLSDVFYKDEDGYTYSNGKTKLI

XP_038905736.1 (-)-germacrene D synthase-like [Benincasa hispida]2.7e-1261.29Show/hide
Query:  EAIQE----VTNGWKEIREDFMQSIDVPYTTFMSVLNLARLSDVFYKDEDGYTYSNGKTKLI
        EAI+E    V NGWK I ED++QS +VP T FM ++NLAR+S++FYKDEDGYT+ NG+TKL+
Subjt:  EAIQE----VTNGWKEIREDFMQSIDVPYTTFMSVLNLARLSDVFYKDEDGYTYSNGKTKLI

TrEMBL top hitse value%identityAlignment
A0A0A0L6X1 Uncharacterized protein7.3e-1166.07Show/hide
Query:  QEVTNGWKEIREDFMQSI-DVPYTTFMSVLNLARLSDVFYKDEDGYTYSNGKTKLI
        ++V N WK I ED+++SI DVP T F SVLNLARLS+ FYKDEDGYT S+G+TK I
Subjt:  QEVTNGWKEIREDFMQSI-DVPYTTFMSVLNLARLSDVFYKDEDGYTYSNGKTKLI

A0A1S3BLL1 (-)-germacrene D synthase-like5.6e-1165.52Show/hide
Query:  EAIQEVTNGWKEIREDFMQSI--DVPYTTFMSVLNLARLSDVFYKDEDGYTYSNGKTK
        E  ++VTN WK+I ED+++S   DVP T F SVLNLARLSD FYKDEDGYT S G+TK
Subjt:  EAIQEVTNGWKEIREDFMQSI--DVPYTTFMSVLNLARLSDVFYKDEDGYTYSNGKTK

A0A5D3CJ95 Uncharacterized protein5.6e-1165.52Show/hide
Query:  EAIQEVTNGWKEIREDFMQSI--DVPYTTFMSVLNLARLSDVFYKDEDGYTYSNGKTK
        E  ++VTN WK+I ED+++S   DVP T F SVLNLARLSD FYKDEDGYT S G+TK
Subjt:  EAIQEVTNGWKEIREDFMQSI--DVPYTTFMSVLNLARLSDVFYKDEDGYTYSNGKTK

A0A6J1DIG3 (+)-gamma-cadinene synthase-like4.9e-1576.27Show/hide
Query:  EAIQEVTNGWKEIREDFMQSIDVPYTT-FMSVLNLARLSDVFYKDEDGYTYSNGKTKLI
        E   +VTN WKEI EDF+QSIDVP TT FMSVLNLARLSD FYK +DGYTYS+G+TKLI
Subjt:  EAIQEVTNGWKEIREDFMQSIDVPYTT-FMSVLNLARLSDVFYKDEDGYTYSNGKTKLI

A0A6J1DKT6 (-)-germacrene D synthase-like8.9e-1777.59Show/hide
Query:  EAIQEVTNGWKEIREDFMQSIDVPYTTFMSVLNLARLSDVFYKDEDGYTYSNGKTKLI
        E  ++VTN WKEI EDF++SIDVP TTFM VLNLARLSD FYKDEDGYTYS+G+TKLI
Subjt:  EAIQEVTNGWKEIREDFMQSIDVPYTTFMSVLNLARLSDVFYKDEDGYTYSNGKTKLI

SwissProt top hitse value%identityAlignment
B2KSJ5 (+)-gamma-cadinene synthase3.1e-0639.66Show/hide
Query:  EAIQEVTNGWKEIREDFMQSIDVPYTTFMSVLNLARLSDVFYKDEDGYTYSNGKTKLI
        E  +EV + WK+  E F +  +VP    M VLN +R+ ++ Y DEDGYT +   TK +
Subjt:  EAIQEVTNGWKEIREDFMQSIDVPYTTFMSVLNLARLSDVFYKDEDGYTYSNGKTKLI

B9S9Z3 Alpha-copaene synthase1.8e-0646.94Show/hide
Query:  QEVTNGWKEIREDFMQSIDVPYTTFMSVLNLARLSDVFYKDEDGYTYSN
        +EVTN WK++ E+ +    VP      V+NL R  DV YKD+DGYT S+
Subjt:  QEVTNGWKEIREDFMQSIDVPYTTFMSVLNLARLSDVFYKDEDGYTYSN

F6M8H4 Probable sesquiterpene synthase1.2e-0542Show/hide
Query:  EAIQEVTNGWKEIREDFMQSIDVPYTTFMSVLNLARLSDVFYKDEDGYTY
        E  + +   WK+I E+ ++   VP    M +LNL R+ DV YK+EDGYT+
Subjt:  EAIQEVTNGWKEIREDFMQSIDVPYTTFMSVLNLARLSDVFYKDEDGYTY

O64961 Germacrene C synthase1.2e-0744.44Show/hide
Query:  IQEVTNGWKEIREDFMQSIDVPYTTFMSVLNLARLSDVFYKDEDGYTYSNGKTK
        ++EVTN WK+I + F +  +VP      VLNL R++D  YK++D YT + GK K
Subjt:  IQEVTNGWKEIREDFMQSIDVPYTTFMSVLNLARLSDVFYKDEDGYTYSNGKTK

Q6Q3H3 (-)-germacrene D synthase4.0e-0651.06Show/hide
Query:  QEVTNGWKEIREDFMQSIDVPYTTFMSVLNLARLSDVFYKDEDGYTY
        Q V   WK+I E+ +    VP    M VLNLAR+ DV YK+EDGYT+
Subjt:  QEVTNGWKEIREDFMQSIDVPYTTFMSVLNLARLSDVFYKDEDGYTY

Arabidopsis top hitse value%identityAlignment
AT1G31950.1 Terpenoid cyclases/Protein prenyltransferases superfamily protein3.5e-0546.3Show/hide
Query:  KEIREDFMQSID-VPYTTFMSVLNLARLSDVFYKDEDGYTYSNGKTKLISHFFT
        K + E+FM S D VP    +  LN+AR+ DVFY + DGY+   GK   I HF T
Subjt:  KEIREDFMQSID-VPYTTFMSVLNLARLSDVFYKDEDGYTYSNGKTKLISHFFT

AT1G48800.1 Terpenoid cyclases/Protein prenyltransferases superfamily protein5.9e-0537.74Show/hide
Query:  QEVTNGWKEIREDFMQSIDVPYTTFMSVLNLARLSDVFYKDEDGYTYSNGKTK
        Q V +G K + E+F++ I+VP+    +VL+  R  ++ Y +EDG+T  NG  K
Subjt:  QEVTNGWKEIREDFMQSIDVPYTTFMSVLNLARLSDVFYKDEDGYTYSNGKTK

AT3G14520.1 Terpenoid cyclases/Protein prenyltransferases superfamily protein1.2e-0544.12Show/hide
Query:  EAIQEV----TNGWKEIREDFMQSID-VPYTTFMSVLNLARLSDVFYKDEDGYTYSNGKTKLISHFFT
        EA QE+    +N  K + E+FM S D VP    +  LN ARL DV Y + DGY+   GK   I HF T
Subjt:  EAIQEV----TNGWKEIREDFMQSID-VPYTTFMSVLNLARLSDVFYKDEDGYTYSNGKTKLISHFFT

AT5G23960.1 terpene synthase 211.6e-0540.91Show/hide
Query:  VTNGWKEIREDFMQSIDVPYTTFMSVLNLARLSDVFYKDEDGYT
        V++ WK++ ++ M+    P+   M VLNL+R+ DVFY+ +D YT
Subjt:  VTNGWKEIREDFMQSIDVPYTTFMSVLNLARLSDVFYKDEDGYT

AT5G23960.2 terpene synthase 211.6e-0540.91Show/hide
Query:  VTNGWKEIREDFMQSIDVPYTTFMSVLNLARLSDVFYKDEDGYT
        V++ WK++ ++ M+    P+   M VLNL+R+ DVFY+ +D YT
Subjt:  VTNGWKEIREDFMQSIDVPYTTFMSVLNLARLSDVFYKDEDGYT


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
GAGGCTATACAAGAAGTTACAAATGGTTGGAAGGAAATTAGGGAAGATTTCATGCAATCAATTGATGTTCCATACACTACTTTTATGTCTGTCTTAAATCTTGCTCGACT
CTCAGATGTCTTTTATAAAGATGAAGATGGTTACACATATTCAAATGGAAAAACCAAACTTATTTCTCATTTCTTTACTCGTGGATCCAAT
mRNA sequenceShow/hide mRNA sequence
GAGGCTATACAAGAAGTTACAAATGGTTGGAAGGAAATTAGGGAAGATTTCATGCAATCAATTGATGTTCCATACACTACTTTTATGTCTGTCTTAAATCTTGCTCGACT
CTCAGATGTCTTTTATAAAGATGAAGATGGTTACACATATTCAAATGGAAAAACCAAACTTATTTCTCATTTCTTTACTCGTGGATCCAAT
Protein sequenceShow/hide protein sequence
EAIQEVTNGWKEIREDFMQSIDVPYTTFMSVLNLARLSDVFYKDEDGYTYSNGKTKLISHFFTRGSN