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MS012950 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS012950
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionRibulose bisphosphate carboxylase large chain
Genome locationscaffold38:823709..824029
RNA-Seq ExpressionMS012950
SyntenyMS012950
Gene Ontology termsGO:0009853 - photorespiration (biological process)
GO:0019253 - reductive pentose-phosphate cycle (biological process)
GO:0009507 - chloroplast (cellular component)
GO:0000287 - magnesium ion binding (molecular function)
GO:0004497 - monooxygenase activity (molecular function)
GO:0016984 - ribulose-bisphosphate carboxylase activity (molecular function)
InterPro domainsIPR000685 - Ribulose bisphosphate carboxylase, large subunit, C-terminal
IPR036376 - Ribulose bisphosphate carboxylase, large subunit, C-terminal domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
AAV65456.1 ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit, partial [Savia dictyocarpa]2.4e-3486.21Show/hide
Query:  VSLPGVLPVASGGIHIWHMPDLTEILGDDYVQQFDGGTLGHLWGNAPGAVANQVALEACVQARSEGRDLAREGNQIIREVSKLSLEL
        VSLPGVLPVASGGIH+WHMP LTEI GDD V QF GGTLGH WGNAPGAVAN+VALEACVQAR+EGRDLAREGN+IIRE SK SLEL
Subjt:  VSLPGVLPVASGGIHIWHMPDLTEILGDDYVQQFDGGTLGHLWGNAPGAVANQVALEACVQARSEGRDLAREGNQIIREVSKLSLEL
AAY19286.1 ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit, partial [Afrostyrax kamerunensis]2.4e-3486.21Show/hide
Query:  VSLPGVLPVASGGIHIWHMPDLTEILGDDYVQQFDGGTLGHLWGNAPGAVANQVALEACVQARSEGRDLAREGNQIIREVSKLSLEL
        VSLPGVLPVASGGIH+WHMP LTEI GDD V QF GGTLGH WGNAPGAVAN+VALEACVQAR+EGRDLAREGN+IIRE SK SLEL
Subjt:  VSLPGVLPVASGGIHIWHMPDLTEILGDDYVQQFDGGTLGHLWGNAPGAVANQVALEACVQARSEGRDLAREGNQIIREVSKLSLEL
ABW34360.1 ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit, partial [Halerpestes cymbalaria]1.8e-3486.21Show/hide
Query:  VSLPGVLPVASGGIHIWHMPDLTEILGDDYVQQFDGGTLGHLWGNAPGAVANQVALEACVQARSEGRDLAREGNQIIREVSKLSLEL
        VSLPGVLPVASGGIH+WHMP LTEI GDD V QF GGTLGH WGNAPGAVAN+VALEACVQAR+EGRDLAREGN+IIRE  KLSLEL
Subjt:  VSLPGVLPVASGGIHIWHMPDLTEILGDDYVQQFDGGTLGHLWGNAPGAVANQVALEACVQARSEGRDLAREGNQIIREVSKLSLEL
AKG25267.1 ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit, partial [Pachysandra terminalis]2.4e-3486.21Show/hide
Query:  VSLPGVLPVASGGIHIWHMPDLTEILGDDYVQQFDGGTLGHLWGNAPGAVANQVALEACVQARSEGRDLAREGNQIIREVSKLSLEL
        VSLPGVLPVASGGIH+WHMP LTEI GDD V QF GGTLGH WGNAPGAVAN+VALEACVQAR+EGRDLAREGN+IIRE SK SLEL
Subjt:  VSLPGVLPVASGGIHIWHMPDLTEILGDDYVQQFDGGTLGHLWGNAPGAVANQVALEACVQARSEGRDLAREGNQIIREVSKLSLEL
ALX36898.1 ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit, partial [Trichosanthes cordata]2.4e-3486.21Show/hide
Query:  VSLPGVLPVASGGIHIWHMPDLTEILGDDYVQQFDGGTLGHLWGNAPGAVANQVALEACVQARSEGRDLAREGNQIIREVSKLSLEL
        VSLPGVLPVASGGIH+WHMP LTEI GDD V QF GGTLGH WGNAPGAVAN+VALEACVQAR+EGRDLAREGN+IIRE SK SLEL
Subjt:  VSLPGVLPVASGGIHIWHMPDLTEILGDDYVQQFDGGTLGHLWGNAPGAVANQVALEACVQARSEGRDLAREGNQIIREVSKLSLEL
TrEMBL top hitse value%identityAlignment
A0A3G1IAX8 Ribulose bisphosphate carboxylase large chain1.2e-3486.21Show/hide
Query:  VSLPGVLPVASGGIHIWHMPDLTEILGDDYVQQFDGGTLGHLWGNAPGAVANQVALEACVQARSEGRDLAREGNQIIREVSKLSLEL
        VSLPGVLPVASGGIH+WHMP LTEI GDD V QF GGTLGH WGNAPGAVAN+VALEACVQAR+EGRDLAREGN+IIRE SK SLEL
Subjt:  VSLPGVLPVASGGIHIWHMPDLTEILGDDYVQQFDGGTLGHLWGNAPGAVANQVALEACVQARSEGRDLAREGNQIIREVSKLSLEL
A0A650FN62 Ribulose bisphosphate carboxylase large chain1.2e-3486.21Show/hide
Query:  VSLPGVLPVASGGIHIWHMPDLTEILGDDYVQQFDGGTLGHLWGNAPGAVANQVALEACVQARSEGRDLAREGNQIIREVSKLSLEL
        VSLPGVLPVASGGIH+WHMP LTEI GDD V QF GGTLGH WGNAPGAVAN+VALEACVQAR+EGRDLAREGN+IIRE SK SLEL
Subjt:  VSLPGVLPVASGGIHIWHMPDLTEILGDDYVQQFDGGTLGHLWGNAPGAVANQVALEACVQARSEGRDLAREGNQIIREVSKLSLEL
B8PRN0 Ribulose bisphosphate carboxylase large chain (Fragment)8.9e-3586.21Show/hide
Query:  VSLPGVLPVASGGIHIWHMPDLTEILGDDYVQQFDGGTLGHLWGNAPGAVANQVALEACVQARSEGRDLAREGNQIIREVSKLSLEL
        VSLPGVLPVASGGIH+WHMP LTEI GDD V QF GGTLGH WGNAPGAVAN+VALEACVQAR+EGRDLAREGN+IIRE  KLSLEL
Subjt:  VSLPGVLPVASGGIHIWHMPDLTEILGDDYVQQFDGGTLGHLWGNAPGAVANQVALEACVQARSEGRDLAREGNQIIREVSKLSLEL
Q5SCL3 Ribulose bisphosphate carboxylase large chain (Fragment)1.2e-3486.21Show/hide
Query:  VSLPGVLPVASGGIHIWHMPDLTEILGDDYVQQFDGGTLGHLWGNAPGAVANQVALEACVQARSEGRDLAREGNQIIREVSKLSLEL
        VSLPGVLPVASGGIH+WHMP LTEI GDD V QF GGTLGH WGNAPGAVAN+VALEACVQAR+EGRDLAREGN+IIRE SK SLEL
Subjt:  VSLPGVLPVASGGIHIWHMPDLTEILGDDYVQQFDGGTLGHLWGNAPGAVANQVALEACVQARSEGRDLAREGNQIIREVSKLSLEL
Q8WL22 Ribulose bisphosphate carboxylase large chain (Fragment)1.2e-3486.21Show/hide
Query:  VSLPGVLPVASGGIHIWHMPDLTEILGDDYVQQFDGGTLGHLWGNAPGAVANQVALEACVQARSEGRDLAREGNQIIREVSKLSLEL
        VSLPGVLPVASGGIH+WHMP LTEI GDD V QF GGTLGH WGNAPGAVAN+VALEACVQAR+EGRDLAREGN+IIRE SK SLEL
Subjt:  VSLPGVLPVASGGIHIWHMPDLTEILGDDYVQQFDGGTLGHLWGNAPGAVANQVALEACVQARSEGRDLAREGNQIIREVSKLSLEL
SwissProt top hitse value%identityAlignment
P28376 Ribulose bisphosphate carboxylase large chain (Fragment)1.2e-3685.06Show/hide
Query:  VSLPGVLPVASGGIHIWHMPDLTEILGDDYVQQFDGGTLGHLWGNAPGAVANQVALEACVQARSEGRDLAREGNQIIREVSKLSLEL
        VSLPGVLPVASGGIH+WHMP LTEI GDD V QF GGTLGH WGNAPGAVAN+VALEACVQAR+EGRDLAREGN+IIRE SK S EL
Subjt:  VSLPGVLPVASGGIHIWHMPDLTEILGDDYVQQFDGGTLGHLWGNAPGAVANQVALEACVQARSEGRDLAREGNQIIREVSKLSLEL
P28443 Ribulose bisphosphate carboxylase large chain (Fragment)1.6e-3683.91Show/hide
Query:  VSLPGVLPVASGGIHIWHMPDLTEILGDDYVQQFDGGTLGHLWGNAPGAVANQVALEACVQARSEGRDLAREGNQIIREVSKLSLEL
        VS+PGVLPVASGGIH+WHMP LTEI GDD V QF GGTLGH WGNAPGAVAN+VALEACV+AR+EGRDLAREGN+IIRE SK SLEL
Subjt:  VSLPGVLPVASGGIHIWHMPDLTEILGDDYVQQFDGGTLGHLWGNAPGAVANQVALEACVQARSEGRDLAREGNQIIREVSKLSLEL
P36481 Ribulose bisphosphate carboxylase large chain (Fragment)2.0e-3685.06Show/hide
Query:  VSLPGVLPVASGGIHIWHMPDLTEILGDDYVQQFDGGTLGHLWGNAPGAVANQVALEACVQARSEGRDLAREGNQIIREVSKLSLEL
        VSLPGVLPVASGGIH+WHMP LTEI GDD V QF GGTLGH WGNAPGAVAN+VALEACVQAR+EGRDLAREGN+IIRE SK S EL
Subjt:  VSLPGVLPVASGGIHIWHMPDLTEILGDDYVQQFDGGTLGHLWGNAPGAVANQVALEACVQARSEGRDLAREGNQIIREVSKLSLEL
Q07209 Ribulose bisphosphate carboxylase large chain (Fragment)2.0e-3685.06Show/hide
Query:  VSLPGVLPVASGGIHIWHMPDLTEILGDDYVQQFDGGTLGHLWGNAPGAVANQVALEACVQARSEGRDLAREGNQIIREVSKLSLEL
        VSLPGVLPVASGGIH+WHMP LTEI GDD V QF GGTLGH WGNAPGAVAN+VALEACVQAR+EGRDLAREGN+IIRE SK S EL
Subjt:  VSLPGVLPVASGGIHIWHMPDLTEILGDDYVQQFDGGTLGHLWGNAPGAVANQVALEACVQARSEGRDLAREGNQIIREVSKLSLEL
Q31827 Ribulose bisphosphate carboxylase large chain (Fragment)2.0e-3685.06Show/hide
Query:  VSLPGVLPVASGGIHIWHMPDLTEILGDDYVQQFDGGTLGHLWGNAPGAVANQVALEACVQARSEGRDLAREGNQIIREVSKLSLEL
        VSLPGVLPVASGGIH+WHMP LTEI GDD V QF GGTLGH WGNAPGAVAN+VALEACVQAR+EGRDLAREGN+IIRE SK S EL
Subjt:  VSLPGVLPVASGGIHIWHMPDLTEILGDDYVQQFDGGTLGHLWGNAPGAVANQVALEACVQARSEGRDLAREGNQIIREVSKLSLEL
Arabidopsis top hitse value%identityAlignment
ATCG00490.1 ribulose-bisphosphate carboxylases6.1e-3671.03Show/hide
Query:  VSLPGVLPVASGGIHIWHMPDLTEILGDDYVQQFDGGTLGHLWGNAPGAVANQVALEACVQARSEGRDLAREGNQIIREVSKLSLELDQRLRDLVLSWFN
        VSLPGVLPVASGGIH+WHMP LTEI GDD V QF GGTLGH WGNAPGAVAN+VALEACVQAR+EGRDLA EGN+IIRE  K S EL           FN
Subjt:  VSLPGVLPVASGGIHIWHMPDLTEILGDDYVQQFDGGTLGHLWGNAPGAVANQVALEACVQARSEGRDLAREGNQIIREVSKLSLELDQRLRDLVLSWFN

Query:  FSSFSLL
        F +   L
Subjt:  FSSFSLL

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
GTCTCTTTACCAGGTGTTCTGCCAGTGGCTTCCGGTGGTATTCACATTTGGCATATGCCTGATCTGACTGAGATTTTGGGAGATGATTATGTACAACAATTCGACGGAGG
AACTTTAGGGCATCTTTGGGGTAATGCACCTGGTGCCGTAGCTAATCAAGTAGCTCTAGAAGCATGTGTACAAGCTCGTAGTGAGGGACGTGATCTTGCTCGTGAGGGTA
ATCAAATTATCCGTGAGGTTAGTAAATTGAGTCTTGAACTAGATCAAAGGTTAAGAGATCTTGTTCTTTCTTGGTTCAATTTCTCATCCTTCAGTCTGTTG
mRNA sequenceShow/hide mRNA sequence
GTCTCTTTACCAGGTGTTCTGCCAGTGGCTTCCGGTGGTATTCACATTTGGCATATGCCTGATCTGACTGAGATTTTGGGAGATGATTATGTACAACAATTCGACGGAGG
AACTTTAGGGCATCTTTGGGGTAATGCACCTGGTGCCGTAGCTAATCAAGTAGCTCTAGAAGCATGTGTACAAGCTCGTAGTGAGGGACGTGATCTTGCTCGTGAGGGTA
ATCAAATTATCCGTGAGGTTAGTAAATTGAGTCTTGAACTAGATCAAAGGTTAAGAGATCTTGTTCTTTCTTGGTTCAATTTCTCATCCTTCAGTCTGTTG
Protein sequenceShow/hide protein sequence
VSLPGVLPVASGGIHIWHMPDLTEILGDDYVQQFDGGTLGHLWGNAPGAVANQVALEACVQARSEGRDLAREGNQIIREVSKLSLELDQRLRDLVLSWFNFSSFSLL