; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MS012952 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS012952
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptiontRNA_edit domain-containing protein
Genome locationscaffold38:841684..847754
RNA-Seq ExpressionMS012952
SyntenyMS012952
Gene Ontology termsGO:0106074 - aminoacyl-tRNA metabolism involved in translational fidelity (biological process)
GO:0002161 - aminoacyl-tRNA editing activity (molecular function)
InterPro domainsIPR007214 - YbaK/aminoacyl-tRNA synthetase-associated domain
IPR036754 - YbaK/aminoacyl-tRNA synthetase-associated domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_008448863.1 PREDICTED: uncharacterized protein LOC103490895 [Cucumis melo]1.9e-11185.71Show/hide
Query:  MGRETEAEAGRYSMEALAKLEHLQNQILHRISKLELACLPNLDSAPSPAPSQGADGDTVARLSAILRTNAVHDFSFKRVPYDYYDWPLEARRDVLGAPSV
        MG E+EA A + SMEALAKLEH Q  ILHRIS LEL  LPNLDS PS  PS GAD DTVARLSAILRTNAV+DFSFKRVP DYYDW LEARRDVL A S+
Subjt:  MGRETEAEAGRYSMEALAKLEHLQNQILHRISKLELACLPNLDSAPSPAPSQGADGDTVARLSAILRTNAVHDFSFKRVPYDYYDWPLEARRDVLGAPSV

Query:  DHLCKSIVLVNTQAPSNVVDCSNRNNSKFYVVVVQYTAKFSAEIVKNFLYSLNDGKIAKKKFNLRLAPEETSAKLTGYEHNGVTCIGMKTDIPVILDEAI
        DHLCKSIVLVNTQAPS+VVDCS+RNNSK+Y+VVVQYTAKF+AE VK+FLYSLNDGKIAKKKFNLRLAPEETS KLTGYEHNGVTCIGMKTDIPVILDEAI
Subjt:  DHLCKSIVLVNTQAPSNVVDCSNRNNSKFYVVVVQYTAKFSAEIVKNFLYSLNDGKIAKKKFNLRLAPEETSAKLTGYEHNGVTCIGMKTDIPVILDEAI

Query:  AKLNPDYFWLGGGEIDLKLGIRTSEFVNFVKPFIVKCS
         KLNPDYFWLGGGEIDLKLGIRTSEF+NFVKPFI+KCS
Subjt:  AKLNPDYFWLGGGEIDLKLGIRTSEFVNFVKPFIVKCS

XP_022951583.1 uncharacterized protein LOC111454353 [Cucurbita moschata]4.8e-10783.19Show/hide
Query:  MGRETEAEAGRYSMEALAKLEHLQNQILHRISKLELACLPNLDSAPSPAPSQGADGDTVARLSAILRTNAVHDFSFKRVPYDYYDWPLEARRDVLGAPSV
        MG E  A A R SMEALAKLE+ Q  I++RISKLELA LPNLDS PSP  S+GADGDTVARLS ILRTNAV+DFSFKRVP DYYDW LEARRDVL A SV
Subjt:  MGRETEAEAGRYSMEALAKLEHLQNQILHRISKLELACLPNLDSAPSPAPSQGADGDTVARLSAILRTNAVHDFSFKRVPYDYYDWPLEARRDVLGAPSV

Query:  DHLCKSIVLVNTQAPSNVVDCSNRNNSKFYVVVVQYTAKFSAEIVKNFLYSLNDGKIAKKKFNLRLAPEETSAKLTGYEHNGVTCIGMKTDIPVILDEAI
        DHLCKSIVLVNTQA S+VVDCSNRNNSK+YVVVVQY+AKF+AE V++FLYSLNDGKI KKKFNLRLAPEE SA+LTGY HN VTCIGMKTDIPVILDEAI
Subjt:  DHLCKSIVLVNTQAPSNVVDCSNRNNSKFYVVVVQYTAKFSAEIVKNFLYSLNDGKIAKKKFNLRLAPEETSAKLTGYEHNGVTCIGMKTDIPVILDEAI

Query:  AKLNPDYFWLGGGEIDLKLGIRTSEFVNFVKPFIVKCS
        AKL+PDYFWLGGGE+DLKLGIRTSEF+NFVKPFI+KCS
Subjt:  AKLNPDYFWLGGGEIDLKLGIRTSEFVNFVKPFIVKCS

XP_023005520.1 uncharacterized protein LOC111498483 [Cucurbita maxima]7.7e-10581.93Show/hide
Query:  MGRETEAEAGRYSMEALAKLEHLQNQILHRISKLELACLPNLDSAPSPAPSQGADGDTVARLSAILRTNAVHDFSFKRVPYDYYDWPLEARRDVLGAPSV
        MG E  A A R SMEALAKLE+ Q  I++RISKLELA LPNLDS PSP  S  ADGDTV+RLS ILRTNAV+DFSF RVP DYYDW LEARRDVL A SV
Subjt:  MGRETEAEAGRYSMEALAKLEHLQNQILHRISKLELACLPNLDSAPSPAPSQGADGDTVARLSAILRTNAVHDFSFKRVPYDYYDWPLEARRDVLGAPSV

Query:  DHLCKSIVLVNTQAPSNVVDCSNRNNSKFYVVVVQYTAKFSAEIVKNFLYSLNDGKIAKKKFNLRLAPEETSAKLTGYEHNGVTCIGMKTDIPVILDEAI
        DHLCKSIVLVNTQA S+VVDCSNRNNSK+YVVVVQY+AKF+AE V++FLYSLNDGKI KKKFNLRLAPEE SA+LTGY HN VTCIGMKTDIPVILDEAI
Subjt:  DHLCKSIVLVNTQAPSNVVDCSNRNNSKFYVVVVQYTAKFSAEIVKNFLYSLNDGKIAKKKFNLRLAPEETSAKLTGYEHNGVTCIGMKTDIPVILDEAI

Query:  AKLNPDYFWLGGGEIDLKLGIRTSEFVNFVKPFIVKCS
        AKL+PDYFWLGGGE+DLKLGIRTSEF+NFVKPFI+KCS
Subjt:  AKLNPDYFWLGGGEIDLKLGIRTSEFVNFVKPFIVKCS

XP_023538668.1 uncharacterized protein LOC111799544 [Cucurbita pepo subsp. pepo]7.7e-10581.93Show/hide
Query:  MGRETEAEAGRYSMEALAKLEHLQNQILHRISKLELACLPNLDSAPSPAPSQGADGDTVARLSAILRTNAVHDFSFKRVPYDYYDWPLEARRDVLGAPSV
        MG E  A A R SMEALAKLE+ Q  I++RI KLELA LPNLDS PSP  S  ADGDTV+RLS ILRTNAV+DFSFKRVP DYYDW LEARRDVL A SV
Subjt:  MGRETEAEAGRYSMEALAKLEHLQNQILHRISKLELACLPNLDSAPSPAPSQGADGDTVARLSAILRTNAVHDFSFKRVPYDYYDWPLEARRDVLGAPSV

Query:  DHLCKSIVLVNTQAPSNVVDCSNRNNSKFYVVVVQYTAKFSAEIVKNFLYSLNDGKIAKKKFNLRLAPEETSAKLTGYEHNGVTCIGMKTDIPVILDEAI
        DHLCKSIVLVNTQA S+VVDCSNRNNSK+YVVVVQY+AKF+AE V++FLYSLNDGKI KKKFNLRLAPEE SA+LTGY HN VTCIGMKTDIPVILDEAI
Subjt:  DHLCKSIVLVNTQAPSNVVDCSNRNNSKFYVVVVQYTAKFSAEIVKNFLYSLNDGKIAKKKFNLRLAPEETSAKLTGYEHNGVTCIGMKTDIPVILDEAI

Query:  AKLNPDYFWLGGGEIDLKLGIRTSEFVNFVKPFIVKCS
        AKL+PDYFWLGGGE+DLKLGIRTSEF+NFVKPFI+KCS
Subjt:  AKLNPDYFWLGGGEIDLKLGIRTSEFVNFVKPFIVKCS

XP_038903466.1 uncharacterized protein LOC120090048 [Benincasa hispida]1.3e-11286.55Show/hide
Query:  MGRETEAEAGRYSMEALAKLEHLQNQILHRISKLELACLPNLDSAPSPAPSQGADGDTVARLSAILRTNAVHDFSFKRVPYDYYDWPLEARRDVLGAPSV
        MG E+EA A +  MEALAKLEH Q  ILHRISKLELA LPNLDSA S  PS G DGDTVARLSAILRTN+V+DFSFKRVP DYYDWPLEARRDVL A SV
Subjt:  MGRETEAEAGRYSMEALAKLEHLQNQILHRISKLELACLPNLDSAPSPAPSQGADGDTVARLSAILRTNAVHDFSFKRVPYDYYDWPLEARRDVLGAPSV

Query:  DHLCKSIVLVNTQAPSNVVDCSNRNNSKFYVVVVQYTAKFSAEIVKNFLYSLNDGKIAKKKFNLRLAPEETSAKLTGYEHNGVTCIGMKTDIPVILDEAI
        DHLCKSIVLVNTQAPS+VVDCS+RNNSK+Y+VVVQYTAKF+AE VK+FLYSLNDGKIAKKKFNLRLAPEETSAKLTGYEHNGVTCIGM+TDIPVILDEAI
Subjt:  DHLCKSIVLVNTQAPSNVVDCSNRNNSKFYVVVVQYTAKFSAEIVKNFLYSLNDGKIAKKKFNLRLAPEETSAKLTGYEHNGVTCIGMKTDIPVILDEAI

Query:  AKLNPDYFWLGGGEIDLKLGIRTSEFVNFVKPFIVKCS
         KLNPDYFWLGGGEIDLKLGIRTSEF+NFVKPFI+KCS
Subjt:  AKLNPDYFWLGGGEIDLKLGIRTSEFVNFVKPFIVKCS

TrEMBL top hitse value%identityAlignment
A0A0A0L4A0 tRNA_edit domain-containing protein4.7e-10077.82Show/hide
Query:  MGRETEAEAGRYSMEALAKLEHLQNQILHRISKLELACLPNLDSAPSPAPSQGA-DGDTVARLSAILRTNAVHDFSFKRVPYDYYDWPLEARRDVLGAPS
        MG E+EA A + SMEA                 L+L CLPNLDS PS  PS GA D DTVARLSAIL TNAV+DFSFKRVP DYYDWPLEARRDVL A S
Subjt:  MGRETEAEAGRYSMEALAKLEHLQNQILHRISKLELACLPNLDSAPSPAPSQGA-DGDTVARLSAILRTNAVHDFSFKRVPYDYYDWPLEARRDVLGAPS

Query:  VDHLCKSIVLVNTQAPSNVVDCSNRNNSKFYVVVVQYTAKFSAEIVKNFLYSLNDGKIAKKKFNLRLAPEETSAKLTGYEHNGVTCIGMKTDIPVILDEA
        +DHLCKSIVLVNTQAPS++VDCS+RNNSK+Y+VVVQYTAKF+AE +++FLYSLNDGKIAKKKFNLRLAPEE SAKLTGYEHNGVTCIGMKTDIPVILDEA
Subjt:  VDHLCKSIVLVNTQAPSNVVDCSNRNNSKFYVVVVQYTAKFSAEIVKNFLYSLNDGKIAKKKFNLRLAPEETSAKLTGYEHNGVTCIGMKTDIPVILDEA

Query:  IAKLNPDYFWLGGGEIDLKLGIRTSEFVNFVKPFIVKCS
        I KLNPDYFWLGGGE DLKLGIRTSEF+N+VKPFI+KCS
Subjt:  IAKLNPDYFWLGGGEIDLKLGIRTSEFVNFVKPFIVKCS

A0A1S3BLB4 uncharacterized protein LOC1034908959.1e-11285.71Show/hide
Query:  MGRETEAEAGRYSMEALAKLEHLQNQILHRISKLELACLPNLDSAPSPAPSQGADGDTVARLSAILRTNAVHDFSFKRVPYDYYDWPLEARRDVLGAPSV
        MG E+EA A + SMEALAKLEH Q  ILHRIS LEL  LPNLDS PS  PS GAD DTVARLSAILRTNAV+DFSFKRVP DYYDW LEARRDVL A S+
Subjt:  MGRETEAEAGRYSMEALAKLEHLQNQILHRISKLELACLPNLDSAPSPAPSQGADGDTVARLSAILRTNAVHDFSFKRVPYDYYDWPLEARRDVLGAPSV

Query:  DHLCKSIVLVNTQAPSNVVDCSNRNNSKFYVVVVQYTAKFSAEIVKNFLYSLNDGKIAKKKFNLRLAPEETSAKLTGYEHNGVTCIGMKTDIPVILDEAI
        DHLCKSIVLVNTQAPS+VVDCS+RNNSK+Y+VVVQYTAKF+AE VK+FLYSLNDGKIAKKKFNLRLAPEETS KLTGYEHNGVTCIGMKTDIPVILDEAI
Subjt:  DHLCKSIVLVNTQAPSNVVDCSNRNNSKFYVVVVQYTAKFSAEIVKNFLYSLNDGKIAKKKFNLRLAPEETSAKLTGYEHNGVTCIGMKTDIPVILDEAI

Query:  AKLNPDYFWLGGGEIDLKLGIRTSEFVNFVKPFIVKCS
         KLNPDYFWLGGGEIDLKLGIRTSEF+NFVKPFI+KCS
Subjt:  AKLNPDYFWLGGGEIDLKLGIRTSEFVNFVKPFIVKCS

A0A6J1DMB4 uncharacterized protein LOC1110213532.0e-10398.94Show/hide
Query:  SQGADGDTVARLSAILRTNAVHDFSFKRVPYDYYDWPLEARRDVLGAPSVDHLCKSIVLVNTQAPSNVVDCSNRNNSKFYVVVVQYTAKFSAEIVKNFLY
        SQGADGDTVARLSAILRTNAVHDFSFKRVPYDYYDWPLEARRDVLGAPSVDHLCKSIVLVNTQAPSNVVDCSNRNNSK+YVVVVQYTAKFSAE VKNFLY
Subjt:  SQGADGDTVARLSAILRTNAVHDFSFKRVPYDYYDWPLEARRDVLGAPSVDHLCKSIVLVNTQAPSNVVDCSNRNNSKFYVVVVQYTAKFSAEIVKNFLY

Query:  SLNDGKIAKKKFNLRLAPEETSAKLTGYEHNGVTCIGMKTDIPVILDEAIAKLNPDYFWLGGGEIDLKLGIRTSEFVNFVKPFIVKCS
        SLNDGKIAKKKFNLRLAPEETSAKLTGYEHNGVTCIGMKTDIPVILDEAIAKLNPDYFWLGGGEIDLKLGIRTSEFVNFVKPFIVKCS
Subjt:  SLNDGKIAKKKFNLRLAPEETSAKLTGYEHNGVTCIGMKTDIPVILDEAIAKLNPDYFWLGGGEIDLKLGIRTSEFVNFVKPFIVKCS

A0A6J1GI39 uncharacterized protein LOC1114543532.3e-10783.19Show/hide
Query:  MGRETEAEAGRYSMEALAKLEHLQNQILHRISKLELACLPNLDSAPSPAPSQGADGDTVARLSAILRTNAVHDFSFKRVPYDYYDWPLEARRDVLGAPSV
        MG E  A A R SMEALAKLE+ Q  I++RISKLELA LPNLDS PSP  S+GADGDTVARLS ILRTNAV+DFSFKRVP DYYDW LEARRDVL A SV
Subjt:  MGRETEAEAGRYSMEALAKLEHLQNQILHRISKLELACLPNLDSAPSPAPSQGADGDTVARLSAILRTNAVHDFSFKRVPYDYYDWPLEARRDVLGAPSV

Query:  DHLCKSIVLVNTQAPSNVVDCSNRNNSKFYVVVVQYTAKFSAEIVKNFLYSLNDGKIAKKKFNLRLAPEETSAKLTGYEHNGVTCIGMKTDIPVILDEAI
        DHLCKSIVLVNTQA S+VVDCSNRNNSK+YVVVVQY+AKF+AE V++FLYSLNDGKI KKKFNLRLAPEE SA+LTGY HN VTCIGMKTDIPVILDEAI
Subjt:  DHLCKSIVLVNTQAPSNVVDCSNRNNSKFYVVVVQYTAKFSAEIVKNFLYSLNDGKIAKKKFNLRLAPEETSAKLTGYEHNGVTCIGMKTDIPVILDEAI

Query:  AKLNPDYFWLGGGEIDLKLGIRTSEFVNFVKPFIVKCS
        AKL+PDYFWLGGGE+DLKLGIRTSEF+NFVKPFI+KCS
Subjt:  AKLNPDYFWLGGGEIDLKLGIRTSEFVNFVKPFIVKCS

A0A6J1KXM4 uncharacterized protein LOC1114984833.7e-10581.93Show/hide
Query:  MGRETEAEAGRYSMEALAKLEHLQNQILHRISKLELACLPNLDSAPSPAPSQGADGDTVARLSAILRTNAVHDFSFKRVPYDYYDWPLEARRDVLGAPSV
        MG E  A A R SMEALAKLE+ Q  I++RISKLELA LPNLDS PSP  S  ADGDTV+RLS ILRTNAV+DFSF RVP DYYDW LEARRDVL A SV
Subjt:  MGRETEAEAGRYSMEALAKLEHLQNQILHRISKLELACLPNLDSAPSPAPSQGADGDTVARLSAILRTNAVHDFSFKRVPYDYYDWPLEARRDVLGAPSV

Query:  DHLCKSIVLVNTQAPSNVVDCSNRNNSKFYVVVVQYTAKFSAEIVKNFLYSLNDGKIAKKKFNLRLAPEETSAKLTGYEHNGVTCIGMKTDIPVILDEAI
        DHLCKSIVLVNTQA S+VVDCSNRNNSK+YVVVVQY+AKF+AE V++FLYSLNDGKI KKKFNLRLAPEE SA+LTGY HN VTCIGMKTDIPVILDEAI
Subjt:  DHLCKSIVLVNTQAPSNVVDCSNRNNSKFYVVVVQYTAKFSAEIVKNFLYSLNDGKIAKKKFNLRLAPEETSAKLTGYEHNGVTCIGMKTDIPVILDEAI

Query:  AKLNPDYFWLGGGEIDLKLGIRTSEFVNFVKPFIVKCS
        AKL+PDYFWLGGGE+DLKLGIRTSEF+NFVKPFI+KCS
Subjt:  AKLNPDYFWLGGGEIDLKLGIRTSEFVNFVKPFIVKCS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT4G16510.1 YbaK/aminoacyl-tRNA synthetase-associated domain3.6e-9274.11Show/hide
Query:  ALAKLEHLQNQILHRISKLELACLPNLDSAPSPAPSQGAD-GDTVARLSAILRTNAVHDFSFKRVPYDYYDWPLEARRDVLGAPSVDHLCKSIVLVNTQA
        A A+LE LQ +ILH+IS LE + LP  +S+ +P+PS   D  +TV RLS IL++  V+DF FKRV  DYYDWPLE+RRDVLGA SVDHLCKSIVLVNTQA
Subjt:  ALAKLEHLQNQILHRISKLELACLPNLDSAPSPAPSQGAD-GDTVARLSAILRTNAVHDFSFKRVPYDYYDWPLEARRDVLGAPSVDHLCKSIVLVNTQA

Query:  PSNVVDCSNRNNSKFYVVVVQYTAKFSAEIVKNFLYSLNDGKIAKKKFNLRLAPEETSAKLTGYEHNGVTCIGMKTDIPVILDEAIAKLNPDYFWLGGGE
         SN++DCS+ NNSK+YVVVVQYTA+F+AE VK FLYSLN+GKI KK+FNLRLAPEETS KLTG+EHNGVTCIGMKT+IPVILDEAI KL PD+FWLGGGE
Subjt:  PSNVVDCSNRNNSKFYVVVVQYTAKFSAEIVKNFLYSLNDGKIAKKKFNLRLAPEETSAKLTGYEHNGVTCIGMKTDIPVILDEAIAKLNPDYFWLGGGE

Query:  IDLKLGIRTSEFVNFVKPFIVKCS
        IDLKLG+RTSEF+ FVKPFIV CS
Subjt:  IDLKLGIRTSEFVNFVKPFIVKCS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
GCGAATTACCCAATGGGGAGGGAGACTGAAGCAGAGGCAGGGCGATACTCCATGGAAGCTCTGGCAAAGCTCGAACATCTCCAGAACCAAATCCTCCATCGAATTTCAAA
GCTCGAGCTCGCCTGCCTTCCAAATCTCGATTCGGCACCTTCCCCTGCCCCCTCCCAAGGCGCAGACGGCGACACTGTGGCTCGACTCTCCGCCATTCTCCGGACCAACG
CTGTCCACGACTTCTCCTTCAAGAGAGTCCCCTACGATTACTACGACTGGCCTCTCGAAGCTCGACGCGACGTTCTCGGTGCCCCCTCCGTCGATCATCTCTGCAAGAGC
ATCGTTCTGGTAAATACTCAAGCTCCATCCAATGTGGTTGATTGCAGCAATCGCAACAATTCAAAATTCTATGTTGTCGTTGTTCAGTATACCGCTAAGTTCAGTGCTGA
AATTGTTAAAAACTTCCTGTATTCACTCAATGATGGCAAAATAGCGAAAAAGAAGTTCAACTTGAGACTTGCTCCGGAGGAGACGTCTGCGAAATTAACTGGATATGAGC
ATAATGGAGTGACATGCATTGGCATGAAAACAGATATTCCAGTGATTTTGGATGAAGCCATTGCAAAACTAAATCCTGATTATTTTTGGTTGGGCGGTGGGGAAATCGAC
CTGAAGCTTGGGATCAGGACGTCCGAGTTCGTTAACTTTGTCAAACCCTTCATTGTCAAATGTAGT
mRNA sequenceShow/hide mRNA sequence
GCGAATTACCCAATGGGGAGGGAGACTGAAGCAGAGGCAGGGCGATACTCCATGGAAGCTCTGGCAAAGCTCGAACATCTCCAGAACCAAATCCTCCATCGAATTTCAAA
GCTCGAGCTCGCCTGCCTTCCAAATCTCGATTCGGCACCTTCCCCTGCCCCCTCCCAAGGCGCAGACGGCGACACTGTGGCTCGACTCTCCGCCATTCTCCGGACCAACG
CTGTCCACGACTTCTCCTTCAAGAGAGTCCCCTACGATTACTACGACTGGCCTCTCGAAGCTCGACGCGACGTTCTCGGTGCCCCCTCCGTCGATCATCTCTGCAAGAGC
ATCGTTCTGGTAAATACTCAAGCTCCATCCAATGTGGTTGATTGCAGCAATCGCAACAATTCAAAATTCTATGTTGTCGTTGTTCAGTATACCGCTAAGTTCAGTGCTGA
AATTGTTAAAAACTTCCTGTATTCACTCAATGATGGCAAAATAGCGAAAAAGAAGTTCAACTTGAGACTTGCTCCGGAGGAGACGTCTGCGAAATTAACTGGATATGAGC
ATAATGGAGTGACATGCATTGGCATGAAAACAGATATTCCAGTGATTTTGGATGAAGCCATTGCAAAACTAAATCCTGATTATTTTTGGTTGGGCGGTGGGGAAATCGAC
CTGAAGCTTGGGATCAGGACGTCCGAGTTCGTTAACTTTGTCAAACCCTTCATTGTCAAATGTAGT
Protein sequenceShow/hide protein sequence
ANYPMGRETEAEAGRYSMEALAKLEHLQNQILHRISKLELACLPNLDSAPSPAPSQGADGDTVARLSAILRTNAVHDFSFKRVPYDYYDWPLEARRDVLGAPSVDHLCKS
IVLVNTQAPSNVVDCSNRNNSKFYVVVVQYTAKFSAEIVKNFLYSLNDGKIAKKKFNLRLAPEETSAKLTGYEHNGVTCIGMKTDIPVILDEAIAKLNPDYFWLGGGEID
LKLGIRTSEFVNFVKPFIVKCS