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MS012953 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS012953
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionEncodes a root meristem growth factor (RGF). Belongs to a family of functionally redundant homologous peptides that are secreted, tyrosine-sulfated, and expressed mainly in the stem cell area and the innermost layer of central columella cells. RGFs are required for maintenance of the root stem cell niche and transit amplifying cell proliferation. Members of this family include: (RGF1), (RGF2), (RGF3), (RGF4), (RGF5), (RGF6), (RGF7), (RGF8) and (RGF9).
Genome locationscaffold38:850959..851111
RNA-Seq ExpressionMS012953
SyntenyMS012953
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022154042.1 uncharacterized protein LOC111021396 [Momordica charantia]3.0e-19100Show/hide
Query:  GMKKHKRLAMEFSMKEKEKLMSYEENEVGEDMVVMDYAQPHRKPPIHNKKP
        GMKKHKRLAMEFSMKEKEKLMSYEENEVGEDMVVMDYAQPHRKPPIHNKKP
Subjt:  GMKKHKRLAMEFSMKEKEKLMSYEENEVGEDMVVMDYAQPHRKPPIHNKKP
XP_023005579.1 uncharacterized protein LOC111498521 [Cucurbita maxima]9.7e-1062.71Show/hide
Query:  GMKKHKRLAMEFSMKEK--------EKLMSYEENEVGEDMVVMDYAQPHRKPPIHNKKP
        GMKK +RLAME  ++++        +K+++ EENEVGEDMVVMDYAQPHRKPPIHN+KP
Subjt:  GMKKHKRLAMEFSMKEK--------EKLMSYEENEVGEDMVVMDYAQPHRKPPIHNKKP
XP_023540680.1 uncharacterized protein LOC111800973 [Cucurbita pepo subsp. pepo]7.4e-1064.91Show/hide
Query:  GMKKHKRLAMEFSMKEK------EKLMSYEENEVGEDMVVMDYAQPHRKPPIHNKKP
        GMKK +RLAME  ++++      +K+++ EENEVGEDMVVMDYAQPHRKPPIHN+KP
Subjt:  GMKKHKRLAMEFSMKEK------EKLMSYEENEVGEDMVVMDYAQPHRKPPIHNKKP
XP_038905996.1 uncharacterized protein LOC120091906 isoform X1 [Benincasa hispida]8.8e-1176.92Show/hide
Query:  GMKKH-KRLAMEFSMKEKEKLMSYEENEVGEDMVVMDYAQPHRKPPIHNKKP
        GMKKH  RL MEF M  KEK+++ +ENEVGEDMVVMDYAQPHRKPPIHN+KP
Subjt:  GMKKH-KRLAMEFSMKEKEKLMSYEENEVGEDMVVMDYAQPHRKPPIHNKKP
XP_038905997.1 uncharacterized protein LOC120091906 isoform X2 [Benincasa hispida]8.8e-1176.92Show/hide
Query:  GMKKH-KRLAMEFSMKEKEKLMSYEENEVGEDMVVMDYAQPHRKPPIHNKKP
        GMKKH  RL MEF M  KEK+++ +ENEVGEDMVVMDYAQPHRKPPIHN+KP
Subjt:  GMKKH-KRLAMEFSMKEKEKLMSYEENEVGEDMVVMDYAQPHRKPPIHNKKP
TrEMBL top hitse value%identityAlignment
A0A0A0L298 Uncharacterized protein4.7e-1075Show/hide
Query:  GMKKH-KRLAMEFSMKEKEKLMSYEENEVGEDMVVMDYAQPHRKPPIHNKKP
        GMK+   RL MEF M  KEK+M+ +ENEVGEDMVVMDYAQPHRKPPIHN+KP
Subjt:  GMKKH-KRLAMEFSMKEKEKLMSYEENEVGEDMVVMDYAQPHRKPPIHNKKP
A0A5B7BC15 Uncharacterized protein (Fragment)1.6e-0554.9Show/hide
Query:  GMKKHKRLAMEFSMKEKEKLMSYEENEVGEDMVVMDYAQPHRKPPIHNKKP
        G K+ +R  + F+  + E+ ++ +ENEV ED+VVMDYAQP RKPPIHNK P
Subjt:  GMKKHKRLAMEFSMKEKEKLMSYEENEVGEDMVVMDYAQPHRKPPIHNKKP
A0A5J4ZYW1 Uncharacterized protein1.6e-0552.94Show/hide
Query:  GMKKHKRLAMEFSMKEKEKLMSYEENEVGEDMVVMDYAQPHRKPPIHNKKP
        G K+  R  +  +  + ++ ++ EEN+V ED+VVMDYAQPHRKPPIHNK+P
Subjt:  GMKKHKRLAMEFSMKEKEKLMSYEENEVGEDMVVMDYAQPHRKPPIHNKKP
A0A6J1DKL1 uncharacterized protein LOC1110213961.5e-19100Show/hide
Query:  GMKKHKRLAMEFSMKEKEKLMSYEENEVGEDMVVMDYAQPHRKPPIHNKKP
        GMKKHKRLAMEFSMKEKEKLMSYEENEVGEDMVVMDYAQPHRKPPIHNKKP
Subjt:  GMKKHKRLAMEFSMKEKEKLMSYEENEVGEDMVVMDYAQPHRKPPIHNKKP
A0A6J1KZM9 uncharacterized protein LOC1114985214.7e-1062.71Show/hide
Query:  GMKKHKRLAMEFSMKEK--------EKLMSYEENEVGEDMVVMDYAQPHRKPPIHNKKP
        GMKK +RLAME  ++++        +K+++ EENEVGEDMVVMDYAQPHRKPPIHN+KP
Subjt:  GMKKHKRLAMEFSMKEK--------EKLMSYEENEVGEDMVVMDYAQPHRKPPIHNKKP
SwissProt top hitse value%identityAlignment
Q93VK8 Protein GOLVEN 19.8e-0579.17Show/hide
Query:  EVGEDMVVMDYAQPHRKPPIHNKK
        E GE++VVMDY QPHRKPPIHN+K
Subjt:  EVGEDMVVMDYAQPHRKPPIHNKK
Arabidopsis top hitse value%identityAlignment
AT4G16515.1 Encodes a root meristem growth factor (RGF). Belongs to a family of functionally redundant homologous peptides that are secreted, tyrosine-sulfated, and expressed mainly in the stem cell area and the innermost layer of central columella cells. RGFs are required for maintenance of the root stem cell niche and transit amplifying cell proliferation. Members of this family include: At5g60810 (RGF1), At1g13620 (RGF2), At2g04025 (RGF3), At3g30350 (RGF4), At5g51451 (RGF5), At4g16515 (RGF6), At3g02240 (RGF7), At2g03830 (RGF8) and At5g64770 (RGF9).6.9e-0679.17Show/hide
Query:  EVGEDMVVMDYAQPHRKPPIHNKK
        E GE++VVMDY QPHRKPPIHN+K
Subjt:  EVGEDMVVMDYAQPHRKPPIHNKK

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
GGAATGAAGAAGCACAAAAGGTTGGCAATGGAGTTCTCAATGAAAGAAAAAGAGAAATTGATGAGCTATGAGGAAAATGAGGTTGGAGAAGACATGGTAGTGATGGATTA
CGCACAACCCCATAGGAAGCCTCCAATTCACAATAAAAAACCC
mRNA sequenceShow/hide mRNA sequence
GGAATGAAGAAGCACAAAAGGTTGGCAATGGAGTTCTCAATGAAAGAAAAAGAGAAATTGATGAGCTATGAGGAAAATGAGGTTGGAGAAGACATGGTAGTGATGGATTA
CGCACAACCCCATAGGAAGCCTCCAATTCACAATAAAAAACCC
Protein sequenceShow/hide protein sequence
GMKKHKRLAMEFSMKEKEKLMSYEENEVGEDMVVMDYAQPHRKPPIHNKKP