CuGenDBv2

Gene ID	MS012977
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Rab5-interacting
Genome location	scaffold38:1108640..1108857
RNA-Seq Expression	MS012977
Synteny	MS012977
Gene Ontology terms	GO:0006996 - organelle organization (biological process) GO:0016021 - integral component of membrane (cellular component)
InterPro domains	IPR010742 - Rab5-interacting protein

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0067751.1 Rab5-interacting [Cucumis melo var. makuwa]

1.1e-22

77.14

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Query:  TINLNSQFHHQNGHLPPFKFTKLFDPNTSWDKDQLGDVLH-----SALVCGLLWGSIPLIGGIWFILFLV
        T+ +NSQ  HQNGHLPPFK  +LFDP TSWDKDQLGDVLH      ALVCGLLWGSIPL+GGIWFILFLV
Subjt:  TINLNSQFHHQNGHLPPFKFTKLFDPNTSWDKDQLGDVLH-----SALVCGLLWGSIPLIGGIWFILFLV

XP_008457469.1 PREDICTED: uncharacterized protein C20orf24 homolog [Cucumis melo]

1.1e-22

77.14

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Query:  TINLNSQFHHQNGHLPPFKFTKLFDPNTSWDKDQLGDVLH-----SALVCGLLWGSIPLIGGIWFILFLV
        T+ +NSQ  HQNGHLPPFK  +LFDP TSWDKDQLGDVLH      ALVCGLLWGSIPL+GGIWFILFLV
Subjt:  TINLNSQFHHQNGHLPPFKFTKLFDPNTSWDKDQLGDVLH-----SALVCGLLWGSIPLIGGIWFILFLV

XP_022948613.1 uncharacterized protein C20orf24 homolog [Cucurbita moschata]

1.2e-21

74.29

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Query:  TINLNSQFHHQNGHLPPFKFTKLFDPNTSWDKDQLGDVLH-----SALVCGLLWGSIPLIGGIWFILFLV
        +I +NSQ  HQNGHLPPFK   LFDP  SWDKDQLGDVLH      ALVCGLLWGS+PL+GGIWFILFLV
Subjt:  TINLNSQFHHQNGHLPPFKFTKLFDPNTSWDKDQLGDVLH-----SALVCGLLWGSIPLIGGIWFILFLV

XP_022998338.1 uncharacterized protein C20orf24 homolog [Cucurbita maxima]

2.7e-21

72.86

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Query:  TINLNSQFHHQNGHLPPFKFTKLFDPNTSWDKDQLGDVLH-----SALVCGLLWGSIPLIGGIWFILFLV
        +I +NSQ  HQNGHLPPFK   LFDP  SWDKDQLGDVLH      ALVCGLLWGS+PL+GGIWFI+FLV
Subjt:  TINLNSQFHHQNGHLPPFKFTKLFDPNTSWDKDQLGDVLH-----SALVCGLLWGSIPLIGGIWFILFLV

XP_038895585.1 respirasome Complex Assembly Factor 1-like isoform X2 [Benincasa hispida]

2.4e-22

80.6

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Query:  LNSQFHHQNGHLPPFKFTKLFDPNTSWDKDQLGDVLH-----SALVCGLLWGSIPLIGGIWFILFLV
        +NSQ  HQNGHLPPFK  KLFDP TSWDKDQLGDVLH      ALVCGLLWGSIPL+GGIWFILFLV
Subjt:  LNSQFHHQNGHLPPFKFTKLFDPNTSWDKDQLGDVLH-----SALVCGLLWGSIPLIGGIWFILFLV

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LY22 Uncharacterized protein

1.4e-20

74.29

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Query:  TINLNSQFHHQNGHLPPFKFTKLFDPNTSWDKDQLGDVLH-----SALVCGLLWGSIPLIGGIWFILFLV
        ++ +NSQ   QNGHLPPFK  KLFDP TSWDKDQLGDVLH      ALVCGLLWGSIPL+GG+WFILFLV
Subjt:  TINLNSQFHHQNGHLPPFKFTKLFDPNTSWDKDQLGDVLH-----SALVCGLLWGSIPLIGGIWFILFLV

A0A1S3C692 uncharacterized protein C20orf24 homolog

5.2e-23

77.14

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Query:  TINLNSQFHHQNGHLPPFKFTKLFDPNTSWDKDQLGDVLH-----SALVCGLLWGSIPLIGGIWFILFLV
        T+ +NSQ  HQNGHLPPFK  +LFDP TSWDKDQLGDVLH      ALVCGLLWGSIPL+GGIWFILFLV
Subjt:  TINLNSQFHHQNGHLPPFKFTKLFDPNTSWDKDQLGDVLH-----SALVCGLLWGSIPLIGGIWFILFLV

A0A5A7VQ84 Rab5-interacting

5.2e-23

77.14

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Query:  TINLNSQFHHQNGHLPPFKFTKLFDPNTSWDKDQLGDVLH-----SALVCGLLWGSIPLIGGIWFILFLV
        T+ +NSQ  HQNGHLPPFK  +LFDP TSWDKDQLGDVLH      ALVCGLLWGSIPL+GGIWFILFLV
Subjt:  TINLNSQFHHQNGHLPPFKFTKLFDPNTSWDKDQLGDVLH-----SALVCGLLWGSIPLIGGIWFILFLV

A0A6J1G9S8 uncharacterized protein C20orf24 homolog

5.8e-22

74.29

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Query:  TINLNSQFHHQNGHLPPFKFTKLFDPNTSWDKDQLGDVLH-----SALVCGLLWGSIPLIGGIWFILFLV
        +I +NSQ  HQNGHLPPFK   LFDP  SWDKDQLGDVLH      ALVCGLLWGS+PL+GGIWFILFLV
Subjt:  TINLNSQFHHQNGHLPPFKFTKLFDPNTSWDKDQLGDVLH-----SALVCGLLWGSIPLIGGIWFILFLV

A0A6J1KGG2 uncharacterized protein C20orf24 homolog

1.3e-21

72.86

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Query:  TINLNSQFHHQNGHLPPFKFTKLFDPNTSWDKDQLGDVLH-----SALVCGLLWGSIPLIGGIWFILFLV
        +I +NSQ  HQNGHLPPFK   LFDP  SWDKDQLGDVLH      ALVCGLLWGS+PL+GGIWFI+FLV
Subjt:  TINLNSQFHHQNGHLPPFKFTKLFDPNTSWDKDQLGDVLH-----SALVCGLLWGSIPLIGGIWFILFLV

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT2G29020.1 Rab5-interacting family protein

7.7e-19

63.08

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Query:  NSQFHHQNGHLPPFKFTKLFDPNTSWDKDQLGDVLH-----SALVCGLLWGSIPLIGGIWFILFL
        + Q +HQN HL  F F KLFD   SWDKDQLGDVLH       L+CGLLWG+IPL+GGIW +LFL
Subjt:  NSQFHHQNGHLPPFKFTKLFDPNTSWDKDQLGDVLH-----SALVCGLLWGSIPLIGGIWFILFL

AT5G59410.1 Rab5-interacting family protein

2.4e-20

62.34

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Query:  MKEIPLGTIN-LNSQFHHQNGHLPPFKFTKLFDPNTSWDKDQLGDVLH-----SALVCGLLWGSIPLIGGIWFILFL
        MKE     +N L  Q +HQN HL P K  KLFDP+ SWDKDQLGDVLH       L+ GLLWGSIPL+GGIW ILFL
Subjt:  MKEIPLGTIN-LNSQFHHQNGHLPPFKFTKLFDPNTSWDKDQLGDVLH-----SALVCGLLWGSIPLIGGIWFILFL

Sequences

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CDS sequence

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ATGAAAGAAATACCCTTGGGTACGATAAACCTTAATTCTCAATTCCACCACCAGAACGGTCACTTGCCACCCTTTAAGTTCACCAAATTGTTCGATCCAAACACTTCCTG
GGATAAGGATCAACTAGGAGATGTGTTGCATTCGGCGCTTGTATGTGGGCTGCTATGGGGTTCCATACCTCTAATTGGCGGCATATGGTTCATTTTATTCTTGGTG

mRNA sequence

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Protein sequence

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MKEIPLGTINLNSQFHHQNGHLPPFKFTKLFDPNTSWDKDQLGDVLHSALVCGLLWGSIPLIGGIWFILFLV

MS012977 (gene) of Bitter gourd (TR) v1 genome