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MS012978 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS012978
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionMediator of RNA polymerase II transcription subunit 8 isoform X2
Genome locationscaffold38:1130253..1130479
RNA-Seq ExpressionMS012978
SyntenyMS012978
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022153214.1 uncharacterized protein LOC111020765 [Momordica charantia]3.5e-0845.33Show/hide
Query:  LNPQANLLWVNGFKSIISELWFERNQIVF-KNLSVSSGVLDIAKFKASQWCALSDLFDSHSPSMICMNWETIVTS
        L+     LW+N  K+++SELWFERN  +F +   +       AKFKAS WC+L D F  HSPSMI  NW   + S
Subjt:  LNPQANLLWVNGFKSIISELWFERNQIVF-KNLSVSSGVLDIAKFKASQWCALSDLFDSHSPSMICMNWETIVTS
XP_038903695.1 uncharacterized protein LOC120090219 [Benincasa hispida]3.0e-0743.48Show/hide
Query:  LLWVNGFKSIISELWFERNQIVFKNLSVS-SGVLDIAKFKASQWCALSDLFDSHSPSMICMNWETIVTS
        LLW N  K+++++LWFERNQ +F N + S    L+ A+ +AS WC LSD F ++S S   +NWE  +++
Subjt:  LLWVNGFKSIISELWFERNQIVFKNLSVS-SGVLDIAKFKASQWCALSDLFDSHSPSMICMNWETIVTS
TrEMBL top hitse value%identityAlignment
A0A5D3DC06 Mediator of RNA polymerase II transcription subunit 8 isoform X27.4e-0437.14Show/hide
Query:  LNPQANLLWVNGFKSIISELWFERNQIVF--KNLSVSSGVLDIAKFKASQWCALSDLFDSHSPSMICMNW
        L  +  L+W+N  K+++SELWFERNQ +F  K       +L   +     WC+L+  F  +S   IC+NW
Subjt:  LNPQANLLWVNGFKSIISELWFERNQIVF--KNLSVSSGVLDIAKFKASQWCALSDLFDSHSPSMICMNW
A0A6J1DIE2 uncharacterized protein LOC1110207651.7e-0845.33Show/hide
Query:  LNPQANLLWVNGFKSIISELWFERNQIVF-KNLSVSSGVLDIAKFKASQWCALSDLFDSHSPSMICMNWETIVTS
        L+     LW+N  K+++SELWFERN  +F +   +       AKFKAS WC+L D F  HSPSMI  NW   + S
Subjt:  LNPQANLLWVNGFKSIISELWFERNQIVF-KNLSVSSGVLDIAKFKASQWCALSDLFDSHSPSMICMNWETIVTS
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
CTCAATCCTCAAGCTAATCTTCTTTGGGTAAATGGATTTAAATCTATCATTTCAGAATTATGGTTTGAAAGAAATCAAATAGTCTTCAAAAATTTATCAGTCTCATCTGG
AGTGCTTGATATTGCCAAGTTCAAAGCCTCGCAATGGTGTGCTCTCTCTGATCTCTTTGATAGTCATTCACCTAGTATGATTTGTATGAATTGGGAGACTATTGTAACTT
CTAGT
mRNA sequenceShow/hide mRNA sequence
CTCAATCCTCAAGCTAATCTTCTTTGGGTAAATGGATTTAAATCTATCATTTCAGAATTATGGTTTGAAAGAAATCAAATAGTCTTCAAAAATTTATCAGTCTCATCTGG
AGTGCTTGATATTGCCAAGTTCAAAGCCTCGCAATGGTGTGCTCTCTCTGATCTCTTTGATAGTCATTCACCTAGTATGATTTGTATGAATTGGGAGACTATTGTAACTT
CTAGT
Protein sequenceShow/hide protein sequence
LNPQANLLWVNGFKSIISELWFERNQIVFKNLSVSSGVLDIAKFKASQWCALSDLFDSHSPSMICMNWETIVTSS