; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MS012990 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS012990
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionRING-H2 finger protein ATL22-like
Genome locationscaffold38:1265120..1265758
RNA-Seq ExpressionMS012990
SyntenyMS012990
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0041066.1 RING-H2 finger protein ATL22-like [Cucumis melo var. makuwa]9.5e-5959.07Show/hide
Query:  MEISV--FSSFFLLLFSSTSIKAE-PSCSHSH-SHGCTKLHFPFKLNLSCSENTTTIHFKSHESSLPLAVKSISYDQKRLDLADPHGCVHGVFLDLDLAP
        M+IS+  FS FF  L S  S  ++ PS S +H +HGC K+ FPF  NLSCS NTT IHFK+++S   L++KSISYDQKRLDL D + CVH  FL+LDL+ 
Subjt:  MEISV--FSSFFLLLFSSTSIKAE-PSCSHSH-SHGCTKLHFPFKLNLSCSENTTTIHFKSHESSLPLAVKSISYDQKRLDLADPHGCVHGVFLDLDLAP

Query:  TPFRYFYALKDYIYVNCTAKL-PPPSTPVPCLSKAGDHGYYVYVVRAAPLVAA--PRRCREVKRVGIPFEYSPYLDDGSFGLSLSWGFDEKQRKTECKTG
        TPFRY+Y +KDY Y+NCT +L    ST +PCLS+ G+  YYVYVVR  PL+ +  PR C+EVKRV IPFEYSPYLDDGSFGL+L+WGFD+ Q KT+ +  
Subjt:  TPFRYFYALKDYIYVNCTAKL-PPPSTPVPCLSKAGDHGYYVYVVRAAPLVAA--PRRCREVKRVGIPFEYSPYLDDGSFGLSLSWGFDEKQRKTECKTG

Query:  CFLKATNLQGILSSF
        CF KATN QG +++F
Subjt:  CFLKATNLQGILSSF

XP_022158470.1 uncharacterized protein LOC111024954 [Momordica charantia]1.0e-11398.51Show/hide
Query:  MEISVFSSFFLLLFSSTSIKAEPSCSHSHSHGCTKLHFPFKLNLSCSENTTTIHFKSHESSLPLAVKSISYDQKRLDLADPHGCVHGVFLDLDLAPTPFR
        MEISVFS FFLLLFSSTSIKAEPSCSHSHSHGCTKLHFPFKLNLSCSENTTTIHFKSHESSLPLAVKSISYDQKRLDLADPHGCVHGVFLDLDLAPTPFR
Subjt:  MEISVFSSFFLLLFSSTSIKAEPSCSHSHSHGCTKLHFPFKLNLSCSENTTTIHFKSHESSLPLAVKSISYDQKRLDLADPHGCVHGVFLDLDLAPTPFR

Query:  YFYALKDYIYVNCTAKLPPPSTPVPCLSKAGDHGYYVYVVRAAPLVAAPRRCREVKRVGIPFEYSPYLDDGSFGLSLSWGFDEKQRKTECKTGCFLKATN
        YFYALKDYIYVNCT KLPPPSTPVPCLSK GDHGYYVYVVRAAPLVAAPRRCREVKRVGIPFEYSPYLDDGSFGLSLSWGFDEKQRKTECKTGCFLKATN
Subjt:  YFYALKDYIYVNCTAKLPPPSTPVPCLSKAGDHGYYVYVVRAAPLVAAPRRCREVKRVGIPFEYSPYLDDGSFGLSLSWGFDEKQRKTECKTGCFLKATN

Query:  LQ
        LQ
Subjt:  LQ

XP_022938488.1 uncharacterized protein LOC111444707 isoform X1 [Cucurbita moschata]2.1e-5858.91Show/hide
Query:  MEISVFSSFFLLLFSSTSIKAEPSCSHSHSHGCTKLHFPFKLNLSCSENTTTIHFKSHESSLPLAVKSISYDQKRLDLADPHGCVHGVFLDLDLAPTPFR
        MEIS        L S  SIKA+ + +H  SHG   +H PF  NLSCS NTT IHFKS++S   L++KSISYDQKRLDL D +GCVHG FL L+L  TPFR
Subjt:  MEISVFSSFFLLLFSSTSIKAEPSCSHSHSHGCTKLHFPFKLNLSCSENTTTIHFKSHESSLPLAVKSISYDQKRLDLADPHGCVHGVFLDLDLAPTPFR

Query:  YFYALKDYIYVNCTAKLPPPSTPVPCLSKAGDHGYYVYVVRAAPLVAAPRRCREVKRVGIPFEYSPYLDDGSFGLSLSWGFDEKQRKTECKTGCFLKATN
        YFY ++DY Y+NCT+KL  PS P+PCLS+  D  YYVYVVR   +   PR C+EVK+V IPFEYSPYLDDGSFGLSLSWG ++ + +TE + GC  KA N
Subjt:  YFYALKDYIYVNCTAKLPPPSTPVPCLSKAGDHGYYVYVVRAAPLVAAPRRCREVKRVGIPFEYSPYLDDGSFGLSLSWGFDEKQRKTECKTGCFLKATN

Query:  LQ
         +
Subjt:  LQ

XP_022938496.1 uncharacterized protein LOC111444707 isoform X2 [Cucurbita moschata]8.6e-6058.54Show/hide
Query:  MEISVFSSFFLLLFSSTSIKAEPSCSHSHSHGCTKLHFPFKLNLSCSENTTTIHFKSHESSLPLAVKSISYDQKRLDLADPHGCVHGVFLDLDLAPTPFR
        MEIS        L S  SIKA+ + +H  SHG   +H PF  NLSCS NTT IHFKS++S   L++KSISYDQKRLDL D +GCVHG FL L+L  TPFR
Subjt:  MEISVFSSFFLLLFSSTSIKAEPSCSHSHSHGCTKLHFPFKLNLSCSENTTTIHFKSHESSLPLAVKSISYDQKRLDLADPHGCVHGVFLDLDLAPTPFR

Query:  YFYALKDYIYVNCTAKLPPPSTPVPCLSKAGDHGYYVYVVRAAPLVAAPRRCREVKRVGIPFEYSPYLDDGSFGLSLSWGFDEKQRKTECKTGCFLKATN
        YFY ++DY Y+NCT+KL  PS P+PCLS+  D  YYVYVVR   +   PR C+EVK+V IPFEYSPYLDDGSFGLSLSWG ++ + +TE + GC  KA N
Subjt:  YFYALKDYIYVNCTAKLPPPSTPVPCLSKAGDHGYYVYVVRAAPLVAAPRRCREVKRVGIPFEYSPYLDDGSFGLSLSWGFDEKQRKTECKTGCFLKATN

Query:  LQGIL
         +G++
Subjt:  LQGIL

XP_038905185.1 putative RING-H2 finger protein ATL21A [Benincasa hispida]2.5e-5959.71Show/hide
Query:  MEISVFSSFFLLLF--SSTSIKAEPSCSHSH-SHGCTKLHFPFKLNLSCSENTTTIHFKSHESSLPLAVKSISYDQKRLDLADPHGCVHGVFLDLDLAPT
        MEIS+FS FF   F  S  SIKA+   S +H +HGC K+ FPF  N+SCS NTT IHFK+++S   L++KSISYDQKRLDL D + CVH  FL L+L  T
Subjt:  MEISVFSSFFLLLF--SSTSIKAEPSCSHSH-SHGCTKLHFPFKLNLSCSENTTTIHFKSHESSLPLAVKSISYDQKRLDLADPHGCVHGVFLDLDLAPT

Query:  PFRYFYALKDYIYVNCTAKL-PPPSTPVPCLSKAGDHGYYVYVVRAAPLVAAPRRCREVKRVGIPFEYSPYLDDGSFGLSLSWGFDEKQRKTECKTGCFL
        PFRYFY +KDY Y+NCT +L    STP+PCLS+ G+  YYVY VR   + + PR C+E+KRV IPFEYSPYLDDGSFGLSL+WGFD+   KT+ +  CF 
Subjt:  PFRYFYALKDYIYVNCTAKL-PPPSTPVPCLSKAGDHGYYVYVVRAAPLVAAPRRCREVKRVGIPFEYSPYLDDGSFGLSLSWGFDEKQRKTECKTGCFL

Query:  KATNLQ
        KATN Q
Subjt:  KATNLQ

TrEMBL top hitse value%identityAlignment
A0A5A7TG97 RING-H2 finger protein ATL22-like4.6e-5959.07Show/hide
Query:  MEISV--FSSFFLLLFSSTSIKAE-PSCSHSH-SHGCTKLHFPFKLNLSCSENTTTIHFKSHESSLPLAVKSISYDQKRLDLADPHGCVHGVFLDLDLAP
        M+IS+  FS FF  L S  S  ++ PS S +H +HGC K+ FPF  NLSCS NTT IHFK+++S   L++KSISYDQKRLDL D + CVH  FL+LDL+ 
Subjt:  MEISV--FSSFFLLLFSSTSIKAE-PSCSHSH-SHGCTKLHFPFKLNLSCSENTTTIHFKSHESSLPLAVKSISYDQKRLDLADPHGCVHGVFLDLDLAP

Query:  TPFRYFYALKDYIYVNCTAKL-PPPSTPVPCLSKAGDHGYYVYVVRAAPLVAA--PRRCREVKRVGIPFEYSPYLDDGSFGLSLSWGFDEKQRKTECKTG
        TPFRY+Y +KDY Y+NCT +L    ST +PCLS+ G+  YYVYVVR  PL+ +  PR C+EVKRV IPFEYSPYLDDGSFGL+L+WGFD+ Q KT+ +  
Subjt:  TPFRYFYALKDYIYVNCTAKL-PPPSTPVPCLSKAGDHGYYVYVVRAAPLVAA--PRRCREVKRVGIPFEYSPYLDDGSFGLSLSWGFDEKQRKTECKTG

Query:  CFLKATNLQGILSSF
        CF KATN QG +++F
Subjt:  CFLKATNLQGILSSF

A0A6J1DVX6 uncharacterized protein LOC1110249545.0e-11498.51Show/hide
Query:  MEISVFSSFFLLLFSSTSIKAEPSCSHSHSHGCTKLHFPFKLNLSCSENTTTIHFKSHESSLPLAVKSISYDQKRLDLADPHGCVHGVFLDLDLAPTPFR
        MEISVFS FFLLLFSSTSIKAEPSCSHSHSHGCTKLHFPFKLNLSCSENTTTIHFKSHESSLPLAVKSISYDQKRLDLADPHGCVHGVFLDLDLAPTPFR
Subjt:  MEISVFSSFFLLLFSSTSIKAEPSCSHSHSHGCTKLHFPFKLNLSCSENTTTIHFKSHESSLPLAVKSISYDQKRLDLADPHGCVHGVFLDLDLAPTPFR

Query:  YFYALKDYIYVNCTAKLPPPSTPVPCLSKAGDHGYYVYVVRAAPLVAAPRRCREVKRVGIPFEYSPYLDDGSFGLSLSWGFDEKQRKTECKTGCFLKATN
        YFYALKDYIYVNCT KLPPPSTPVPCLSK GDHGYYVYVVRAAPLVAAPRRCREVKRVGIPFEYSPYLDDGSFGLSLSWGFDEKQRKTECKTGCFLKATN
Subjt:  YFYALKDYIYVNCTAKLPPPSTPVPCLSKAGDHGYYVYVVRAAPLVAAPRRCREVKRVGIPFEYSPYLDDGSFGLSLSWGFDEKQRKTECKTGCFLKATN

Query:  LQ
        LQ
Subjt:  LQ

A0A6J1FDB4 uncharacterized protein LOC111444707 isoform X24.2e-6058.54Show/hide
Query:  MEISVFSSFFLLLFSSTSIKAEPSCSHSHSHGCTKLHFPFKLNLSCSENTTTIHFKSHESSLPLAVKSISYDQKRLDLADPHGCVHGVFLDLDLAPTPFR
        MEIS        L S  SIKA+ + +H  SHG   +H PF  NLSCS NTT IHFKS++S   L++KSISYDQKRLDL D +GCVHG FL L+L  TPFR
Subjt:  MEISVFSSFFLLLFSSTSIKAEPSCSHSHSHGCTKLHFPFKLNLSCSENTTTIHFKSHESSLPLAVKSISYDQKRLDLADPHGCVHGVFLDLDLAPTPFR

Query:  YFYALKDYIYVNCTAKLPPPSTPVPCLSKAGDHGYYVYVVRAAPLVAAPRRCREVKRVGIPFEYSPYLDDGSFGLSLSWGFDEKQRKTECKTGCFLKATN
        YFY ++DY Y+NCT+KL  PS P+PCLS+  D  YYVYVVR   +   PR C+EVK+V IPFEYSPYLDDGSFGLSLSWG ++ + +TE + GC  KA N
Subjt:  YFYALKDYIYVNCTAKLPPPSTPVPCLSKAGDHGYYVYVVRAAPLVAAPRRCREVKRVGIPFEYSPYLDDGSFGLSLSWGFDEKQRKTECKTGCFLKATN

Query:  LQGIL
         +G++
Subjt:  LQGIL

A0A6J1FJ12 uncharacterized protein LOC111444707 isoform X11.0e-5858.91Show/hide
Query:  MEISVFSSFFLLLFSSTSIKAEPSCSHSHSHGCTKLHFPFKLNLSCSENTTTIHFKSHESSLPLAVKSISYDQKRLDLADPHGCVHGVFLDLDLAPTPFR
        MEIS        L S  SIKA+ + +H  SHG   +H PF  NLSCS NTT IHFKS++S   L++KSISYDQKRLDL D +GCVHG FL L+L  TPFR
Subjt:  MEISVFSSFFLLLFSSTSIKAEPSCSHSHSHGCTKLHFPFKLNLSCSENTTTIHFKSHESSLPLAVKSISYDQKRLDLADPHGCVHGVFLDLDLAPTPFR

Query:  YFYALKDYIYVNCTAKLPPPSTPVPCLSKAGDHGYYVYVVRAAPLVAAPRRCREVKRVGIPFEYSPYLDDGSFGLSLSWGFDEKQRKTECKTGCFLKATN
        YFY ++DY Y+NCT+KL  PS P+PCLS+  D  YYVYVVR   +   PR C+EVK+V IPFEYSPYLDDGSFGLSLSWG ++ + +TE + GC  KA N
Subjt:  YFYALKDYIYVNCTAKLPPPSTPVPCLSKAGDHGYYVYVVRAAPLVAAPRRCREVKRVGIPFEYSPYLDDGSFGLSLSWGFDEKQRKTECKTGCFLKATN

Query:  LQ
         +
Subjt:  LQ

A0A6J1KXL9 uncharacterized protein LOC111498479 isoform X21.8e-5857.77Show/hide
Query:  MEISVFSSFFLLLFSSTSIKAE--PSCSHSHSHGCTKLHFPFKLNLSCSENTTTIHFKSHESSLPLAVKSISYDQKRLDLADPHGCVHGVFLDLDLAPTP
        MEIS    F   L S  SIKA+  P+ +   SHG   +H PF  NLSCS NTT IHFKS++S   L++KSISYD+KRLDL D +GCVHG FL L+L+ TP
Subjt:  MEISVFSSFFLLLFSSTSIKAE--PSCSHSHSHGCTKLHFPFKLNLSCSENTTTIHFKSHESSLPLAVKSISYDQKRLDLADPHGCVHGVFLDLDLAPTP

Query:  FRYFYALKDYIYVNCTAKLPPPSTPVPCLSKAGDHGYYVYVVRAAPLVAAPRRCREVKRVGIPFEYSPYLDDGSFGLSLSWGFDEKQRKTECKTGCFLKA
        FRYFY ++DY Y+NCT+KL  PS P+PCLS+  D  YYVYVVR   +   PR C+EVK+V IPFEYSPYLDDGSFGLSL+WG ++ + +TE + GC  KA
Subjt:  FRYFYALKDYIYVNCTAKLPPPSTPVPCLSKAGDHGYYVYVVRAAPLVAAPRRCREVKRVGIPFEYSPYLDDGSFGLSLSWGFDEKQRKTECKTGCFLKA

Query:  TNLQGI
         N +G+
Subjt:  TNLQGI

SwissProt top hitse value%identityAlignment
Q9SKK8 RING-H2 finger protein ATL221.5e-0627.23Show/hide
Query:  VFSSFFLLLFSSTSIKAEPSCSHSHSHGCTKLHFPFKL-------------NLSCSEN-TTTIHFKSHESSLPLAVKSISYDQKRLDLADPHGCVHGVFL
        +F  FF LL +S   + +P  S S S       FPF L             NL C ++  TT+     E   P  VK I Y+ +R+ L DP  C+    L
Subjt:  VFSSFFLLLFSSTSIKAEPSCSHSHSHGCTKLHFPFKL-------------NLSCSEN-TTTIHFKSHESSLPLAVKSISYDQKRLDLADPHGCVHGVFL

Query:  DLDLAPTPFRYFYALKDYIYVNC--TAKLPPPSTPVPCLSKAGDHGYYVYVVRAAPLVAAPRRCREVKRVGIPFE----YSPYLD-DGSFGLSLSWGFD-
        + D + +PF  F   ++Y ++ C   A +      + CL   G+     +VV+   L + P  C   K + +PF     Y+ Y D   S  + L W    
Subjt:  DLDLAPTPFRYFYALKDYIYVNC--TAKLPPPSTPVPCLSKAGDHGYYVYVVRAAPLVAAPRRCREVKRVGIPFE----YSPYLD-DGSFGLSLSWGFD-

Query:  --EKQRKTECKTG
          + +R+T  + G
Subjt:  --EKQRKTECKTG

Arabidopsis top hitse value%identityAlignment
AT2G25410.1 RING/U-box superfamily protein1.1e-0727.23Show/hide
Query:  VFSSFFLLLFSSTSIKAEPSCSHSHSHGCTKLHFPFKL-------------NLSCSEN-TTTIHFKSHESSLPLAVKSISYDQKRLDLADPHGCVHGVFL
        +F  FF LL +S   + +P  S S S       FPF L             NL C ++  TT+     E   P  VK I Y+ +R+ L DP  C+    L
Subjt:  VFSSFFLLLFSSTSIKAEPSCSHSHSHGCTKLHFPFKL-------------NLSCSEN-TTTIHFKSHESSLPLAVKSISYDQKRLDLADPHGCVHGVFL

Query:  DLDLAPTPFRYFYALKDYIYVNC--TAKLPPPSTPVPCLSKAGDHGYYVYVVRAAPLVAAPRRCREVKRVGIPFE----YSPYLD-DGSFGLSLSWGFD-
        + D + +PF  F   ++Y ++ C   A +      + CL   G+     +VV+   L + P  C   K + +PF     Y+ Y D   S  + L W    
Subjt:  DLDLAPTPFRYFYALKDYIYVNC--TAKLPPPSTPVPCLSKAGDHGYYVYVVRAAPLVAAPRRCREVKRVGIPFE----YSPYLD-DGSFGLSLSWGFD-

Query:  --EKQRKTECKTG
          + +R+T  + G
Subjt:  --EKQRKTECKTG


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAAATCTCTGTCTTTTCCTCCTTCTTCCTCCTCCTCTTCTCTTCCACCTCCATTAAAGCTGAACCAAGCTGCAGCCATAGCCATAGCCATGGCTGTACAAAGCTCCA
CTTCCCTTTCAAACTAAACCTCTCTTGCTCAGAAAACACCACAACAATCCACTTCAAAAGCCATGAATCATCTCTACCTCTGGCAGTGAAATCCATTTCCTACGACCAAA
AAAGGCTGGATCTTGCAGACCCCCACGGCTGCGTCCACGGCGTCTTCCTCGATCTCGACCTCGCTCCGACCCCGTTCCGCTACTTCTACGCCCTCAAAGACTACATCTAC
GTCAACTGCACGGCGAAACTGCCGCCACCTTCGACGCCGGTGCCGTGCCTGAGCAAGGCAGGGGATCATGGCTACTATGTGTATGTCGTGAGGGCGGCGCCGCTGGTGGC
AGCGCCTAGGCGCTGCAGGGAAGTCAAGAGAGTGGGGATCCCATTTGAGTACAGTCCTTATCTTGATGATGGGTCCTTTGGACTTTCCTTGAGTTGGGGTTTTGATGAAA
AGCAGAGGAAAACAGAGTGCAAAACAGGGTGTTTCTTGAAAGCTACAAATCTTCAAGGTATTCTTTCTTCCTTTGCTACTCTACCCTCA
mRNA sequenceShow/hide mRNA sequence
ATGGAAATCTCTGTCTTTTCCTCCTTCTTCCTCCTCCTCTTCTCTTCCACCTCCATTAAAGCTGAACCAAGCTGCAGCCATAGCCATAGCCATGGCTGTACAAAGCTCCA
CTTCCCTTTCAAACTAAACCTCTCTTGCTCAGAAAACACCACAACAATCCACTTCAAAAGCCATGAATCATCTCTACCTCTGGCAGTGAAATCCATTTCCTACGACCAAA
AAAGGCTGGATCTTGCAGACCCCCACGGCTGCGTCCACGGCGTCTTCCTCGATCTCGACCTCGCTCCGACCCCGTTCCGCTACTTCTACGCCCTCAAAGACTACATCTAC
GTCAACTGCACGGCGAAACTGCCGCCACCTTCGACGCCGGTGCCGTGCCTGAGCAAGGCAGGGGATCATGGCTACTATGTGTATGTCGTGAGGGCGGCGCCGCTGGTGGC
AGCGCCTAGGCGCTGCAGGGAAGTCAAGAGAGTGGGGATCCCATTTGAGTACAGTCCTTATCTTGATGATGGGTCCTTTGGACTTTCCTTGAGTTGGGGTTTTGATGAAA
AGCAGAGGAAAACAGAGTGCAAAACAGGGTGTTTCTTGAAAGCTACAAATCTTCAAGGTATTCTTTCTTCCTTTGCTACTCTACCCTCA
Protein sequenceShow/hide protein sequence
MEISVFSSFFLLLFSSTSIKAEPSCSHSHSHGCTKLHFPFKLNLSCSENTTTIHFKSHESSLPLAVKSISYDQKRLDLADPHGCVHGVFLDLDLAPTPFRYFYALKDYIY
VNCTAKLPPPSTPVPCLSKAGDHGYYVYVVRAAPLVAAPRRCREVKRVGIPFEYSPYLDDGSFGLSLSWGFDEKQRKTECKTGCFLKATNLQGILSSFATLPS