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MS013001 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS013001
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionWD repeat-containing protein 70
Genome locationscaffold38:1379662..1379801
RNA-Seq ExpressionMS013001
SyntenyMS013001
Gene Ontology termsGO:1903775 - regulation of DNA double-strand break processing (biological process)
GO:2001173 - regulation of histone H2B conserved C-terminal lysine ubiquitination (biological process)
GO:0005634 - nucleus (cellular component)
GO:0035861 - site of double-strand break (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0037937.1 WD repeat-containing protein 70 [Cucumis melo var. makuwa]2.3e-1076Show/hide
Query:  QVWDLRQMKKPLKVFDSLP-NYTQTN---SPDEQLFLTRTSIDKESKTGG
        +VWDLRQMKKPLKVFD LP NY QTN   SPDEQLFLT TS++K+S+TGG
Subjt:  QVWDLRQMKKPLKVFDSLP-NYTQTN---SPDEQLFLTRTSIDKESKTGG
XP_004152006.1 WD repeat-containing protein 70 [Cucumis sativus]1.8e-1076Show/hide
Query:  QVWDLRQMKKPLKVFDSLP-NYTQTN---SPDEQLFLTRTSIDKESKTGG
        +VWDLRQMKKPLKVFD+LP NY QTN   SPDEQLFLT TS++K+S+TGG
Subjt:  QVWDLRQMKKPLKVFDSLP-NYTQTN---SPDEQLFLTRTSIDKESKTGG
XP_008447362.1 PREDICTED: WD repeat-containing protein 70 [Cucumis melo]2.3e-1076Show/hide
Query:  QVWDLRQMKKPLKVFDSLP-NYTQTN---SPDEQLFLTRTSIDKESKTGG
        +VWDLRQMKKPLKVFD LP NY QTN   SPDEQLFLT TS++K+S+TGG
Subjt:  QVWDLRQMKKPLKVFDSLP-NYTQTN---SPDEQLFLTRTSIDKESKTGG
XP_022131253.1 WD repeat-containing protein 70 [Momordica charantia]2.3e-1076Show/hide
Query:  QVWDLRQMKKPLKVFDSLP-NYTQTN---SPDEQLFLTRTSIDKESKTGG
        +VWDLRQMKKPLKVFD LP NY QTN   SPDEQLFLT TS++K+S+TGG
Subjt:  QVWDLRQMKKPLKVFDSLP-NYTQTN---SPDEQLFLTRTSIDKESKTGG
XP_038888479.1 WD repeat-containing protein 70 [Benincasa hispida]1.0e-1078Show/hide
Query:  QVWDLRQMKKPLKVFDSLP-NYTQTN---SPDEQLFLTRTSIDKESKTGG
        +VWDLRQMKKPLKVFD LP NY QTN   SPDEQLFLT TS++KES+TGG
Subjt:  QVWDLRQMKKPLKVFDSLP-NYTQTN---SPDEQLFLTRTSIDKESKTGG
TrEMBL top hitse value%identityAlignment
A0A0A0L8N1 WD_REPEATS_REGION domain-containing protein8.6e-1176Show/hide
Query:  QVWDLRQMKKPLKVFDSLP-NYTQTN---SPDEQLFLTRTSIDKESKTGG
        +VWDLRQMKKPLKVFD+LP NY QTN   SPDEQLFLT TS++K+S+TGG
Subjt:  QVWDLRQMKKPLKVFDSLP-NYTQTN---SPDEQLFLTRTSIDKESKTGG
A0A1S3BI49 WD repeat-containing protein 701.1e-1076Show/hide
Query:  QVWDLRQMKKPLKVFDSLP-NYTQTN---SPDEQLFLTRTSIDKESKTGG
        +VWDLRQMKKPLKVFD LP NY QTN   SPDEQLFLT TS++K+S+TGG
Subjt:  QVWDLRQMKKPLKVFDSLP-NYTQTN---SPDEQLFLTRTSIDKESKTGG
A0A5D3D627 WD repeat-containing protein 701.1e-1076Show/hide
Query:  QVWDLRQMKKPLKVFDSLP-NYTQTN---SPDEQLFLTRTSIDKESKTGG
        +VWDLRQMKKPLKVFD LP NY QTN   SPDEQLFLT TS++K+S+TGG
Subjt:  QVWDLRQMKKPLKVFDSLP-NYTQTN---SPDEQLFLTRTSIDKESKTGG
A0A6J1BST8 WD repeat-containing protein 701.1e-1076Show/hide
Query:  QVWDLRQMKKPLKVFDSLP-NYTQTN---SPDEQLFLTRTSIDKESKTGG
        +VWDLRQMKKPLKVFD LP NY QTN   SPDEQLFLT TS++K+S+TGG
Subjt:  QVWDLRQMKKPLKVFDSLP-NYTQTN---SPDEQLFLTRTSIDKESKTGG
A0A6J1ET28 WD repeat-containing protein 701.5e-1076Show/hide
Query:  QVWDLRQMKKPLKVFDSLP-NYTQTN---SPDEQLFLTRTSIDKESKTGG
        +VWDLRQ+KKPLKVFD LP NY QTN   SPDEQLFLT TS++KES+TGG
Subjt:  QVWDLRQMKKPLKVFDSLP-NYTQTN---SPDEQLFLTRTSIDKESKTGG
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT2G20330.1 Transducin/WD40 repeat-like superfamily protein2.9e-1166Show/hide
Query:  QVWDLRQMKKPLKVFDSLPN-YTQTN---SPDEQLFLTRTSIDKESKTGG
        +VWDLRQMK+ LKVF+ LPN Y QTN   SPDEQ+ LT TS++K+S TGG
Subjt:  QVWDLRQMKKPLKVFDSLPN-YTQTN---SPDEQLFLTRTSIDKESKTGG

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
CAGGTTTGGGATTTGCGCCAAATGAAAAAACCTCTCAAGGTGTTTGATAGTCTCCCAAACTATACCCAAACAAATAGTCCTGATGAGCAACTCTTTCTGACTCGAACATC
GATCGATAAAGAGAGCAAAACGGGTGGG
mRNA sequenceShow/hide mRNA sequence
CAGGTTTGGGATTTGCGCCAAATGAAAAAACCTCTCAAGGTGTTTGATAGTCTCCCAAACTATACCCAAACAAATAGTCCTGATGAGCAACTCTTTCTGACTCGAACATC
GATCGATAAAGAGAGCAAAACGGGTGGG
Protein sequenceShow/hide protein sequence
QVWDLRQMKKPLKVFDSLPNYTQTNSPDEQLFLTRTSIDKESKTGG