; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MS013011 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS013011
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionReverse transcriptase domain-containing protein
Genome locationscaffold344:129891..130190
RNA-Seq ExpressionMS013011
SyntenyMS013011
Gene Ontology termsGO:0016020 - membrane (cellular component)
GO:0016787 - hydrolase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_015382226.1 uncharacterized protein LOC107175329, partial [Citrus sinensis]2.9e-2654Show/hide
Query:  LGFQDLKLFNQALLAKQGWQILSSPTSLLGRVLKSKYFNNCGFMEAHVGSSASFIWRSLMWGRDLLRTGLCWRVGRGVQIQVYDNNWLPRDGAISIRSVP
        +GF+D   FNQAL+AKQGW+I+  P SL+ RVLK+KYFN   FMEA +GS  SF+WRS++WGR +++ GL W++G G Q+ +Y +NWLPR  A    S P
Subjt:  LGFQDLKLFNQALLAKQGWQILSSPTSLLGRVLKSKYFNNCGFMEAHVGSSASFIWRSLMWGRDLLRTGLCWRVGRGVQIQVYDNNWLPRDGAISIRSVP
XP_022150918.1 uncharacterized protein LOC111018954 [Momordica charantia]3.5e-2754Show/hide
Query:  LGFQDLKLFNQALLAKQGWQILSSPTSLLGRVLKSKYFNNCGFMEAHVGSSASFIWRSLMWGRDLLRTGLCWRVGRGVQIQVYDNNWLPRDGAISIRSVP
        +GF+DL+LFN+ALLAKQ W+IL+ P S+L RVLK +YF +C FMEA +  + S+IWRS++WGRDLL+ GL WR+G G  + +Y +NW+P    + I S P
Subjt:  LGFQDLKLFNQALLAKQGWQILSSPTSLLGRVLKSKYFNNCGFMEAHVGSSASFIWRSLMWGRDLLRTGLCWRVGRGVQIQVYDNNWLPRDGAISIRSVP
XP_022159001.1 uncharacterized protein LOC111025446 [Momordica charantia]1.1e-2553.06Show/hide
Query:  LGFQDLKLFNQALLAKQGWQILSSPTSLLGRVLKSKYFNNCGFMEAHVGSSASFIWRSLMWGRDLLRTGLCWRVGRGVQIQVYDNNWLPRDGAISIRS
        +GF+DL+LFN+ALLAKQ W+IL++P S+L +VLK +YF NC  ++A +  S SFIWRSL+WG +LL+ GL WR+G G  + VY +NW+P   ++ I S
Subjt:  LGFQDLKLFNQALLAKQGWQILSSPTSLLGRVLKSKYFNNCGFMEAHVGSSASFIWRSLMWGRDLLRTGLCWRVGRGVQIQVYDNNWLPRDGAISIRS
XP_022159057.1 uncharacterized protein LOC111025497 [Momordica charantia]2.9e-3469Show/hide
Query:  LGFQDLKLFNQALLAKQGWQILSSPTSLLGRVLKSKYFNNCGFMEAHVGSSASFIWRSLMWGRDLLRTGLCWRVGRGVQIQVYDNNWLPRDGAISIRSVP
        LGF+DL+ FNQALLAKQGWQI S P+SLL  VLK KYF NC F+EA VGS ASFIWRSL+WG DLLR GL WRVG G  I++Y++NW+PRDG +S++S P
Subjt:  LGFQDLKLFNQALLAKQGWQILSSPTSLLGRVLKSKYFNNCGFMEAHVGSSASFIWRSLMWGRDLLRTGLCWRVGRGVQIQVYDNNWLPRDGAISIRSVP
XP_024037590.1 uncharacterized protein LOC112097210 [Citrus clementina]1.1e-2553Show/hide
Query:  LGFQDLKLFNQALLAKQGWQILSSPTSLLGRVLKSKYFNNCGFMEAHVGSSASFIWRSLMWGRDLLRTGLCWRVGRGVQIQVYDNNWLPRDGAISIRSVP
        +GF+DL  FNQAL+AKQGW+I+  P+SL+ RVLK++YF + GFM A +GS  SF+WRS++WGR +L  G  WR+G G  + VY NNW+PR       S P
Subjt:  LGFQDLKLFNQALLAKQGWQILSSPTSLLGRVLKSKYFNNCGFMEAHVGSSASFIWRSLMWGRDLLRTGLCWRVGRGVQIQVYDNNWLPRDGAISIRSVP
TrEMBL top hitse value%identityAlignment
A0A251NPF0 Reverse transcriptase domain-containing protein1.2e-2556Show/hide
Query:  LGFQDLKLFNQALLAKQGWQILSSPTSLLGRVLKSKYFNNCGFMEAHVGSSASFIWRSLMWGRDLLRTGLCWRVGRGVQIQVYDNNWLPRDGAISIRSVP
        LGF+DL+ FNQALLAKQ W+IL +P SL+ R+ +++Y  +  F+EA VG++ SFIWRSL WG++LL  GL WRVG GV IQVY + WLP      I S P
Subjt:  LGFQDLKLFNQALLAKQGWQILSSPTSLLGRVLKSKYFNNCGFMEAHVGSSASFIWRSLMWGRDLLRTGLCWRVGRGVQIQVYDNNWLPRDGAISIRSVP
A0A6J1DAR4 uncharacterized protein LOC1110189541.7e-2754Show/hide
Query:  LGFQDLKLFNQALLAKQGWQILSSPTSLLGRVLKSKYFNNCGFMEAHVGSSASFIWRSLMWGRDLLRTGLCWRVGRGVQIQVYDNNWLPRDGAISIRSVP
        +GF+DL+LFN+ALLAKQ W+IL+ P S+L RVLK +YF +C FMEA +  + S+IWRS++WGRDLL+ GL WR+G G  + +Y +NW+P    + I S P
Subjt:  LGFQDLKLFNQALLAKQGWQILSSPTSLLGRVLKSKYFNNCGFMEAHVGSSASFIWRSLMWGRDLLRTGLCWRVGRGVQIQVYDNNWLPRDGAISIRSVP
A0A6J1DYS7 uncharacterized protein LOC1110254971.4e-3469Show/hide
Query:  LGFQDLKLFNQALLAKQGWQILSSPTSLLGRVLKSKYFNNCGFMEAHVGSSASFIWRSLMWGRDLLRTGLCWRVGRGVQIQVYDNNWLPRDGAISIRSVP
        LGF+DL+ FNQALLAKQGWQI S P+SLL  VLK KYF NC F+EA VGS ASFIWRSL+WG DLLR GL WRVG G  I++Y++NW+PRDG +S++S P
Subjt:  LGFQDLKLFNQALLAKQGWQILSSPTSLLGRVLKSKYFNNCGFMEAHVGSSASFIWRSLMWGRDLLRTGLCWRVGRGVQIQVYDNNWLPRDGAISIRSVP
A0A6J1E2L3 uncharacterized protein LOC1110254465.4e-2653.06Show/hide
Query:  LGFQDLKLFNQALLAKQGWQILSSPTSLLGRVLKSKYFNNCGFMEAHVGSSASFIWRSLMWGRDLLRTGLCWRVGRGVQIQVYDNNWLPRDGAISIRS
        +GF+DL+LFN+ALLAKQ W+IL++P S+L +VLK +YF NC  ++A +  S SFIWRSL+WG +LL+ GL WR+G G  + VY +NW+P   ++ I S
Subjt:  LGFQDLKLFNQALLAKQGWQILSSPTSLLGRVLKSKYFNNCGFMEAHVGSSASFIWRSLMWGRDLLRTGLCWRVGRGVQIQVYDNNWLPRDGAISIRS
M5W5F3 Reverse transcriptase domain-containing protein (Fragment)1.2e-2556Show/hide
Query:  LGFQDLKLFNQALLAKQGWQILSSPTSLLGRVLKSKYFNNCGFMEAHVGSSASFIWRSLMWGRDLLRTGLCWRVGRGVQIQVYDNNWLPRDGAISIRSVP
        LGF+DL+ FNQALLAKQ W+IL +P SL+ R+ +++Y  +  F+EA VG++ SFIWRSL WG++LL  GL WRVG GV IQVY + WLP      I S P
Subjt:  LGFQDLKLFNQALLAKQGWQILSSPTSLLGRVLKSKYFNNCGFMEAHVGSSASFIWRSLMWGRDLLRTGLCWRVGRGVQIQVYDNNWLPRDGAISIRSVP
SwissProt top hitse value%identityAlignment
P93295 Uncharacterized mitochondrial protein AtMg003101.5e-1746.59Show/hide
Query:  LGFQDLKLFNQALLAKQGWQILSSPTSLLGRVLKSKYFNNCGFMEAHVGSSASFIWRSLMWGRDLLRTGLCWRVGRGVQIQVYDNNWL
        LGF+DL  FNQALLAKQ ++I+  P +LL R+L+S+YF +   ME  VG+  S+ WRS++ GR+LL  GL   +G G+  +V+ + W+
Subjt:  LGFQDLKLFNQALLAKQGWQILSSPTSLLGRVLKSKYFNNCGFMEAHVGSSASFIWRSLMWGRDLLRTGLCWRVGRGVQIQVYDNNWL
Arabidopsis top hitse value%identityAlignment
AT4G29090.1 Ribonuclease H-like superfamily protein9.1e-1839.81Show/hide
Query:  LGFQDLKLFNQALLAKQGWQILSSPTSLLGRVLKSKYFNNCGFMEAHVGSSASFIWRSLMWGRDLLRTGLCWRVGRGVQIQVYDNNWL---PRDGAISIR
        +GF+D++ FN ALL KQ W++LS P SL+ +V KS+YF+    + A +GS  SF+W+S+   +++LR G    VG G  I ++ + WL   P   A+ ++
Subjt:  LGFQDLKLFNQALLAKQGWQILSSPTSLLGRVLKSKYFNNCGFMEAHVGSSASFIWRSLMWGRDLLRTGLCWRVGRGVQIQVYDNNWL---PRDGAISIR

Query:  SVP
         VP
Subjt:  SVP
ATMG00310.1 RNA-directed DNA polymerase (reverse transcriptase)-related family protein1.1e-1846.59Show/hide
Query:  LGFQDLKLFNQALLAKQGWQILSSPTSLLGRVLKSKYFNNCGFMEAHVGSSASFIWRSLMWGRDLLRTGLCWRVGRGVQIQVYDNNWL
        LGF+DL  FNQALLAKQ ++I+  P +LL R+L+S+YF +   ME  VG+  S+ WRS++ GR+LL  GL   +G G+  +V+ + W+
Subjt:  LGFQDLKLFNQALLAKQGWQILSSPTSLLGRVLKSKYFNNCGFMEAHVGSSASFIWRSLMWGRDLLRTGLCWRVGRGVQIQVYDNNWL

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
TTGGGTTTTCAGGACTTGAAATTATTTAATCAAGCCCTTCTTGCTAAACAAGGATGGCAGATTCTTTCGAGTCCGACTTCTCTTCTTGGCAGGGTTTTGAAATCGAAGTA
CTTCAATAATTGTGGCTTTATGGAGGCCCATGTGGGCTCTTCGGCTTCTTTTATCTGGCGAAGCCTAATGTGGGGTCGGGATTTATTACGGACTGGTCTCTGCTGGCGGG
TGGGCCGTGGGGTGCAGATCCAAGTTTATGATAATAATTGGCTGCCCAGGGATGGGGCTATTTCGATCCGGTCGGTACCT
mRNA sequenceShow/hide mRNA sequence
TTGGGTTTTCAGGACTTGAAATTATTTAATCAAGCCCTTCTTGCTAAACAAGGATGGCAGATTCTTTCGAGTCCGACTTCTCTTCTTGGCAGGGTTTTGAAATCGAAGTA
CTTCAATAATTGTGGCTTTATGGAGGCCCATGTGGGCTCTTCGGCTTCTTTTATCTGGCGAAGCCTAATGTGGGGTCGGGATTTATTACGGACTGGTCTCTGCTGGCGGG
TGGGCCGTGGGGTGCAGATCCAAGTTTATGATAATAATTGGCTGCCCAGGGATGGGGCTATTTCGATCCGGTCGGTACCT
Protein sequenceShow/hide protein sequence
LGFQDLKLFNQALLAKQGWQILSSPTSLLGRVLKSKYFNNCGFMEAHVGSSASFIWRSLMWGRDLLRTGLCWRVGRGVQIQVYDNNWLPRDGAISIRSVP