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MS013012 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS013012
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionReverse transcriptase domain-containing protein
Genome locationscaffold344:138262..138510
RNA-Seq ExpressionMS013012
SyntenyMS013012
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA3465141.1 reverse transcriptase [Gossypium australe]1.9e-1853.01Show/hide
Query:  LANRLKSVIGYIISDMQSAFISSRVISDNIIIGHEVFRHIKGRKTGTKGLVALKLDMSKTHDRVEWSFLEQMMLKLGFTIAWV
        +ANRL+ VIG  I  +QSAF+  R+ISDN+++ +E+   ++ ++TG KG +A+KLDMSK +DRVEW FL++MMLK+GF ++WV
Subjt:  LANRLKSVIGYIISDMQSAFISSRVISDNIIIGHEVFRHIKGRKTGTKGLVALKLDMSKTHDRVEWSFLEQMMLKLGFTIAWV

XP_017239753.1 PREDICTED: uncharacterized protein LOC108212537 [Daucus carota subsp. sativus]1.4e-1854.22Show/hide
Query:  LANRLKSVIGYIISDMQSAFISSRVISDNIIIGHEVFRHIKGRKTGTKGLVALKLDMSKTHDRVEWSFLEQMMLKLGFTIAWV
        +ANR+KS++  ++SD QSAFI +R+ISDNI+I +E+  ++KG+K G  G +ALKLDMSK +DR+EW FL +++LK+GF+  WV
Subjt:  LANRLKSVIGYIISDMQSAFISSRVISDNIIIGHEVFRHIKGRKTGTKGLVALKLDMSKTHDRVEWSFLEQMMLKLGFTIAWV

XP_019151886.1 PREDICTED: uncharacterized protein LOC109148608 [Ipomoea nil]1.4e-1860.98Show/hide
Query:  ANRLKSVIGYIISDMQSAFISSRVISDNIIIGHEVFRHIKGRKTGTKGLVALKLDMSKTHDRVEWSFLEQMMLKLGFTIAWV
        ANRLKS++  +IS  QSAFI  R+I+DNI++  EV  H+K +  G KGLVALKLDMSK +DRVEW FLE +MLK+GF+  WV
Subjt:  ANRLKSVIGYIISDMQSAFISSRVISDNIIIGHEVFRHIKGRKTGTKGLVALKLDMSKTHDRVEWSFLEQMMLKLGFTIAWV

XP_022143493.1 uncharacterized protein LOC111013370 [Momordica charantia]9.9e-2060.24Show/hide
Query:  LANRLKSVIGYIISDMQSAFISSRVISDNIIIGHEVFRHIKGRKTGTKGLVALKLDMSKTHDRVEWSFLEQMMLKLGFTIAWV
        +ANR K V+G +IS  QSAFI +R I+DNIIIGHE   HI+ +KTG+ GL ALKLD+SK  DRVEW+++E++MLK GF   WV
Subjt:  LANRLKSVIGYIISDMQSAFISSRVISDNIIIGHEVFRHIKGRKTGTKGLVALKLDMSKTHDRVEWSFLEQMMLKLGFTIAWV

XP_030969743.1 uncharacterized protein LOC115990020 [Quercus lobata]1.1e-1859.04Show/hide
Query:  LANRLKSVIGYIISDMQSAFISSRVISDNIIIGHEVFRHIKGRKTGTKGLVALKLDMSKTHDRVEWSFLEQMMLKLGFTIAWV
        +ANRLK ++  IISD QSAFI+ R+I+DN++I  E   H+K   TG  G +ALKLDMSK +DRVEWSFLE+++LKLGF  +WV
Subjt:  LANRLKSVIGYIISDMQSAFISSRVISDNIIIGHEVFRHIKGRKTGTKGLVALKLDMSKTHDRVEWSFLEQMMLKLGFTIAWV

TrEMBL top hitse value%identityAlignment
A0A2N9EVJ2 Reverse transcriptase domain-containing protein1.4e-1957.83Show/hide
Query:  LANRLKSVIGYIISDMQSAFISSRVISDNIIIGHEVFRHIKGRKTGTKGLVALKLDMSKTHDRVEWSFLEQMMLKLGFTIAWV
        L NRLKS++ +IIS+ QSAF+ SR+I+DNI++  E   H+K R TG +G +ALKLDMSK +DRVEW FL+ +MLK+GF   WV
Subjt:  LANRLKSVIGYIISDMQSAFISSRVISDNIIIGHEVFRHIKGRKTGTKGLVALKLDMSKTHDRVEWSFLEQMMLKLGFTIAWV

A0A2N9GN35 Uncharacterized protein3.1e-1959.04Show/hide
Query:  LANRLKSVIGYIISDMQSAFISSRVISDNIIIGHEVFRHIKGRKTGTKGLVALKLDMSKTHDRVEWSFLEQMMLKLGFTIAWV
        LANRLK ++  IIS+ QSAF+  R+ISDNI+I  E   H++  K   +G +ALKLDMSKT+DRVEW+FLE +MLK+GF I+WV
Subjt:  LANRLKSVIGYIISDMQSAFISSRVISDNIIIGHEVFRHIKGRKTGTKGLVALKLDMSKTHDRVEWSFLEQMMLKLGFTIAWV

A0A2N9GXF5 Uncharacterized protein3.1e-1959.04Show/hide
Query:  LANRLKSVIGYIISDMQSAFISSRVISDNIIIGHEVFRHIKGRKTGTKGLVALKLDMSKTHDRVEWSFLEQMMLKLGFTIAWV
        LANRLK ++  IIS+ QSAF+  R+ISDNI+I  E   H++  K   +G +ALKLDMSKT+DRVEW+FLE +MLK+GF I+WV
Subjt:  LANRLKSVIGYIISDMQSAFISSRVISDNIIIGHEVFRHIKGRKTGTKGLVALKLDMSKTHDRVEWSFLEQMMLKLGFTIAWV

A0A2N9J6Y2 Uncharacterized protein7.4e-2161.45Show/hide
Query:  LANRLKSVIGYIISDMQSAFISSRVISDNIIIGHEVFRHIKGRKTGTKGLVALKLDMSKTHDRVEWSFLEQMMLKLGFTIAWV
        LANRLK ++ YIIS+ QSAF+  R+ISDNI+I  E   H+K  K G +G +ALKLDMSK +DRVEW+FLE +MLK+GFT++WV
Subjt:  LANRLKSVIGYIISDMQSAFISSRVISDNIIIGHEVFRHIKGRKTGTKGLVALKLDMSKTHDRVEWSFLEQMMLKLGFTIAWV

A0A6J1CQU9 uncharacterized protein LOC1110133704.8e-2060.24Show/hide
Query:  LANRLKSVIGYIISDMQSAFISSRVISDNIIIGHEVFRHIKGRKTGTKGLVALKLDMSKTHDRVEWSFLEQMMLKLGFTIAWV
        +ANR K V+G +IS  QSAFI +R I+DNIIIGHE   HI+ +KTG+ GL ALKLD+SK  DRVEW+++E++MLK GF   WV
Subjt:  LANRLKSVIGYIISDMQSAFISSRVISDNIIIGHEVFRHIKGRKTGTKGLVALKLDMSKTHDRVEWSFLEQMMLKLGFTIAWV

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT4G20520.1 RNA binding;RNA-directed DNA polymerases1.1e-1138.55Show/hide
Query:  LANRLKSVIGYIISDMQSAFISSRVISDNIIIGHEVFRHIKGRKTGTKGLVALKLDMSKTHDRVEWSFLEQMMLKLGFTIAWV
        +  RLK ++  +I   Q++FI  RV +DNI+   E   H   RK G KG + LKLD+ K +DR+ W +LE  ++  GF   W+
Subjt:  LANRLKSVIGYIISDMQSAFISSRVISDNIIIGHEVFRHIKGRKTGTKGLVALKLDMSKTHDRVEWSFLEQMMLKLGFTIAWV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
CTAGCGAATCGTCTCAAATCTGTTATTGGATATATTATATCAGACATGCAATCAGCTTTCATTTCGAGTCGAGTCATTTCGGACAATATCATCATAGGCCACGAAGTTTT
TCGTCACATAAAGGGGAGGAAGACAGGCACAAAGGGGTTGGTAGCACTTAAACTGGATATGAGTAAGACACATGACAGAGTTGAATGGAGCTTTCTAGAACAGATGATGC
TTAAGCTCGGATTCACTATTGCGTGGGTT
mRNA sequenceShow/hide mRNA sequence
CTAGCGAATCGTCTCAAATCTGTTATTGGATATATTATATCAGACATGCAATCAGCTTTCATTTCGAGTCGAGTCATTTCGGACAATATCATCATAGGCCACGAAGTTTT
TCGTCACATAAAGGGGAGGAAGACAGGCACAAAGGGGTTGGTAGCACTTAAACTGGATATGAGTAAGACACATGACAGAGTTGAATGGAGCTTTCTAGAACAGATGATGC
TTAAGCTCGGATTCACTATTGCGTGGGTT
Protein sequenceShow/hide protein sequence
LANRLKSVIGYIISDMQSAFISSRVISDNIIIGHEVFRHIKGRKTGTKGLVALKLDMSKTHDRVEWSFLEQMMLKLGFTIAWV