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MS013019 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS013019
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionDNA-directed RNA polymerase subunit
Genome locationscaffold344:287077..289739
RNA-Seq ExpressionMS013019
SyntenyMS013019
Gene Ontology termsGO:0006386 - termination of RNA polymerase III transcription (biological process)
GO:0042779 - tRNA 3'-trailer cleavage (biological process)
GO:0005666 - RNA polymerase III complex (cellular component)
GO:0005730 - nucleolus (cellular component)
GO:0003676 - nucleic acid binding (molecular function)
GO:0003899 - DNA-directed 5'-3' RNA polymerase activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR001222 - Zinc finger, TFIIS-type
IPR001529 - DNA-directed RNA polymerase, M/15kDa subunit
IPR012164 - DNA-directed RNA polymerase subunit/transcription factor S
IPR019761 - DNA-directed RNA polymerase M, 15kDa subunit, conserved site
IPR034014 - Pol III subunit C11, C-terminal zinc ribbon


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6597716.1 DNA-directed RNA polymerase III subunit RPC10, partial [Cucurbita argyrosperma subsp. sororia]8.8e-5691.89Show/hide
Query:  MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVCHLENRVKIKRKQHLLKKELEPIISDDDMKTAAQTEATCPNCAFGKAAFIQVQLRSADEPATTFYKCM
        MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYV +LENRVKIKRKQHL+KKELEPIISDDDMK AAQTEATCPNC FGKAAFIQ+QLRSADEPA+TFYKCM
Subjt:  MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVCHLENRVKIKRKQHLLKKELEPIISDDDMKTAAQTEATCPNCAFGKAAFIQVQLRSADEPATTFYKCM

Query:  NENCRHNWRED
        NE+CR NWRED
Subjt:  NENCRHNWRED

XP_004141147.1 DNA-directed RNA polymerase III subunit RPC10 [Cucumis sativus]2.7e-5794.59Show/hide
Query:  MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVCHLENRVKIKRKQHLLKKELEPIISDDDMKTAAQTEATCPNCAFGKAAFIQVQLRSADEPATTFYKCM
        MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYV +LENRVKIKRKQHL+KKELEPIISDDDMK AAQTEATCPNCAFGKAAFIQ+QLRSADEPATTFYKCM
Subjt:  MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVCHLENRVKIKRKQHLLKKELEPIISDDDMKTAAQTEATCPNCAFGKAAFIQVQLRSADEPATTFYKCM

Query:  NENCRHNWRED
        NENCR NWRED
Subjt:  NENCRHNWRED

XP_022152387.1 DNA-directed RNA polymerase III subunit RPC10-like [Momordica charantia]9.0e-6199.1Show/hide
Query:  MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVCHLENRVKIKRKQHLLKKELEPIISDDDMKTAAQTEATCPNCAFGKAAFIQVQLRSADEPATTFYKCM
        MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVCHLENRVKIKRKQHLLKKELEPIISDDDMKTAAQTEATCPNCAFGKAAFIQ+QLRSADEPATTFYKCM
Subjt:  MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVCHLENRVKIKRKQHLLKKELEPIISDDDMKTAAQTEATCPNCAFGKAAFIQVQLRSADEPATTFYKCM

Query:  NENCRHNWRED
        NENCRHNWRED
Subjt:  NENCRHNWRED

XP_022152562.1 DNA-directed RNA polymerase III subunit RPC10-like [Momordica charantia]5.5e-5895.5Show/hide
Query:  MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVCHLENRVKIKRKQHLLKKELEPIISDDDMKTAAQTEATCPNCAFGKAAFIQVQLRSADEPATTFYKCM
        MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVCHLENRVKIKRKQHL+KKELEPIISD+DMK AAQTEATCPNCAFGKAAFIQVQLRSADEPATTFYKCM
Subjt:  MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVCHLENRVKIKRKQHLLKKELEPIISDDDMKTAAQTEATCPNCAFGKAAFIQVQLRSADEPATTFYKCM

Query:  NENCRHNWRED
        NE+CR NWRED
Subjt:  NENCRHNWRED

XP_038903069.1 DNA-directed RNA polymerase III subunit RPC10-like [Benincasa hispida]3.2e-5895.5Show/hide
Query:  MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVCHLENRVKIKRKQHLLKKELEPIISDDDMKTAAQTEATCPNCAFGKAAFIQVQLRSADEPATTFYKCM
        MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYV +LENRVKIKRKQHL+KKELEPIISDDDMK AAQTEATCPNCAFGKAAFIQ+QLRSADEPATTFYKCM
Subjt:  MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVCHLENRVKIKRKQHLLKKELEPIISDDDMKTAAQTEATCPNCAFGKAAFIQVQLRSADEPATTFYKCM

Query:  NENCRHNWRED
        NENCRHNWRED
Subjt:  NENCRHNWRED

TrEMBL top hitse value%identityAlignment
A0A0A0LCM4 DNA-directed RNA polymerase subunit1.3e-5794.59Show/hide
Query:  MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVCHLENRVKIKRKQHLLKKELEPIISDDDMKTAAQTEATCPNCAFGKAAFIQVQLRSADEPATTFYKCM
        MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYV +LENRVKIKRKQHL+KKELEPIISDDDMK AAQTEATCPNCAFGKAAFIQ+QLRSADEPATTFYKCM
Subjt:  MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVCHLENRVKIKRKQHLLKKELEPIISDDDMKTAAQTEATCPNCAFGKAAFIQVQLRSADEPATTFYKCM

Query:  NENCRHNWRED
        NENCR NWRED
Subjt:  NENCRHNWRED

A0A1S3CQ50 DNA-directed RNA polymerase subunit1.3e-5794.59Show/hide
Query:  MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVCHLENRVKIKRKQHLLKKELEPIISDDDMKTAAQTEATCPNCAFGKAAFIQVQLRSADEPATTFYKCM
        MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYV +LENRVKIKRKQHL+KKELEPIISDDDMK AAQTEATCPNCAFGKAAFIQ+QLRSADEPATTFYKCM
Subjt:  MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVCHLENRVKIKRKQHLLKKELEPIISDDDMKTAAQTEATCPNCAFGKAAFIQVQLRSADEPATTFYKCM

Query:  NENCRHNWRED
        NENCR NWRED
Subjt:  NENCRHNWRED

A0A6J1DDT5 DNA-directed RNA polymerase subunit4.4e-6199.1Show/hide
Query:  MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVCHLENRVKIKRKQHLLKKELEPIISDDDMKTAAQTEATCPNCAFGKAAFIQVQLRSADEPATTFYKCM
        MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVCHLENRVKIKRKQHLLKKELEPIISDDDMKTAAQTEATCPNCAFGKAAFIQ+QLRSADEPATTFYKCM
Subjt:  MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVCHLENRVKIKRKQHLLKKELEPIISDDDMKTAAQTEATCPNCAFGKAAFIQVQLRSADEPATTFYKCM

Query:  NENCRHNWRED
        NENCRHNWRED
Subjt:  NENCRHNWRED

A0A6J1DGL3 DNA-directed RNA polymerase subunit2.7e-5895.5Show/hide
Query:  MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVCHLENRVKIKRKQHLLKKELEPIISDDDMKTAAQTEATCPNCAFGKAAFIQVQLRSADEPATTFYKCM
        MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVCHLENRVKIKRKQHL+KKELEPIISD+DMK AAQTEATCPNCAFGKAAFIQVQLRSADEPATTFYKCM
Subjt:  MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVCHLENRVKIKRKQHLLKKELEPIISDDDMKTAAQTEATCPNCAFGKAAFIQVQLRSADEPATTFYKCM

Query:  NENCRHNWRED
        NE+CR NWRED
Subjt:  NENCRHNWRED

A0A6J1IB59 DNA-directed RNA polymerase subunit4.2e-5691.89Show/hide
Query:  MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVCHLENRVKIKRKQHLLKKELEPIISDDDMKTAAQTEATCPNCAFGKAAFIQVQLRSADEPATTFYKCM
        MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYV +LENRVKIKRKQHL+KKELEPIISDDDMK AAQTEATCPNC FGKAAFIQ+QLRSADEPA+TFYKCM
Subjt:  MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVCHLENRVKIKRKQHLLKKELEPIISDDDMKTAAQTEATCPNCAFGKAAFIQVQLRSADEPATTFYKCM

Query:  NENCRHNWRED
        NE+CR NWRED
Subjt:  NENCRHNWRED

SwissProt top hitse value%identityAlignment
O13896 DNA-directed RNA polymerase III subunit RPC105.4e-1638.6Show/hide
Query:  MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVCHLENRVKIKRKQHLLKKELEPIISDDD-MKTAAQTEATCPN--CAFGKAAFIQVQLRSADEPATTFY
        M+FCPTCGN L   +   G+++ F C TCPY  H      +  +    +KE++ ++  ++  ++  QTE TC N  C   +A F Q+Q+RSADEP +TFY
Subjt:  MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVCHLENRVKIKRKQHLLKKELEPIISDDD-MKTAAQTEATCPN--CAFGKAAFIQVQLRSADEPATTFY

Query:  KCMNENCRHNWRED
        +C    C+  WRE+
Subjt:  KCMNENCRHNWRED

Q04307 DNA-directed RNA polymerase III subunit RPC104.6e-1538.6Show/hide
Query:  MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVCHLENRVKIKRKQHLLKKELEPIISDDDMKTAAQTEATCPN---CAFGKAAFIQVQLRSADEPATTFY
        + FCP+C NML     + G  +   C +CPY   +E  ++I  ++ L +KE++ ++         QT+  CPN   C    A F Q+Q+RSADEP TTFY
Subjt:  MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVCHLENRVKIKRKQHLLKKELEPIISDDDMKTAAQTEATCPN---CAFGKAAFIQVQLRSADEPATTFY

Query:  KCMNENCRHNWRED
        KC+  NC H W+E+
Subjt:  KCMNENCRHNWRED

Q2M2S7 DNA-directed RNA polymerase III subunit RPC105.4e-1642.59Show/hide
Query:  FCPTCGNMLQFELPNMGKSSRFFCPTCPYVCHLENRVKIKRKQHLLKKELEPIISDDDMKTAAQTEATCPNCAFGKAAFIQVQLRSADEPATTFYKCMNE
        FCP CGN L  E     +  RF C TCPYV H   R    RK   LK+  + +      +    T   CP C   +A F+Q+Q R ADEP TTFYKC N 
Subjt:  FCPTCGNMLQFELPNMGKSSRFFCPTCPYVCHLENRVKIKRKQHLLKKELEPIISDDDMKTAAQTEATCPNCAFGKAAFIQVQLRSADEPATTFYKCMNE

Query:  NCRHNWRE
         C H WR+
Subjt:  NCRHNWRE

Q9CQZ7 DNA-directed RNA polymerase III subunit RPC101.1e-1642.59Show/hide
Query:  FCPTCGNMLQFELPNMGKSSRFFCPTCPYVCHLENRVKIKRKQHLLKKELEPIISDDDMKTAAQTEATCPNCAFGKAAFIQVQLRSADEPATTFYKCMNE
        FCP CGN L  E     +  RF C TCPYV ++  +V   RK   LK+  + +      +    T   CP C   +A F+Q+Q RSADEP TTFYKC N 
Subjt:  FCPTCGNMLQFELPNMGKSSRFFCPTCPYVCHLENRVKIKRKQHLLKKELEPIISDDDMKTAAQTEATCPNCAFGKAAFIQVQLRSADEPATTFYKCMNE

Query:  NCRHNWRE
         C H WR+
Subjt:  NCRHNWRE

Q9Y2Y1 DNA-directed RNA polymerase III subunit RPC106.4e-1742.59Show/hide
Query:  FCPTCGNMLQFELPNMGKSSRFFCPTCPYVCHLENRVKIKRKQHLLKKELEPIISDDDMKTAAQTEATCPNCAFGKAAFIQVQLRSADEPATTFYKCMNE
        FCP CGN L  E     +  RF C TCPYV ++  +V   RK   LK+  + +      +    T  +CP C   +A F+Q+Q RSADEP TTFYKC N 
Subjt:  FCPTCGNMLQFELPNMGKSSRFFCPTCPYVCHLENRVKIKRKQHLLKKELEPIISDDDMKTAAQTEATCPNCAFGKAAFIQVQLRSADEPATTFYKCMNE

Query:  NCRHNWRE
         C H WR+
Subjt:  NCRHNWRE

Arabidopsis top hitse value%identityAlignment
AT1G01210.1 DNA-directed RNA polymerase, subunit M, archaeal5.5e-3253.15Show/hide
Query:  MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVCHLENRVKIKRKQHLLKKELEPIISDDDMKTAAQTEATCPNCAFGKAAFIQVQLRSADEPATTFYKCM
        MEFCPTCGN+L++E    G +SRFFC TCPYV +++ +V+IK+KQ L+KK +E +++ DD+ TAA+TEA CP C   KA F  +Q+RSADEP + FY+C+
Subjt:  MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVCHLENRVKIKRKQHLLKKELEPIISDDDMKTAAQTEATCPNCAFGKAAFIQVQLRSADEPATTFYKCM

Query:  NENCRHNWRED
           C   WRE+
Subjt:  NENCRHNWRED

AT2G38560.1 transcript elongation factor IIS4.9e-0439.13Show/hide
Query:  AAQTEATCPNCAFGKAAFIQVQLRSADEPATTFYKCMNENCRHNWR
        A+  +  C  C   K  + Q+Q RSADEP TT+  C+  NC ++W+
Subjt:  AAQTEATCPNCAFGKAAFIQVQLRSADEPATTFYKCMNENCRHNWR

AT4G07950.1 DNA-directed RNA polymerase, subunit M, archaeal5.9e-3456.76Show/hide
Query:  MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVCHLENRVKIKRKQHLLKKELEPIISDDDMKTAAQTEATCPNCAFGKAAFIQVQLRSADEPATTFYKCM
        MEFCPTCGN+L++E    G SSRFFC TCPYV ++E RV+IK+KQ L+KK +EP+++ DD+ TAA+TEA CP C   KA F  +Q+RSADEP + FY+C+
Subjt:  MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVCHLENRVKIKRKQHLLKKELEPIISDDDMKTAAQTEATCPNCAFGKAAFIQVQLRSADEPATTFYKCM

Query:  NENCRHNWRED
           C   WRE+
Subjt:  NENCRHNWRED


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGTTCTGCCCAACTTGCGGGAACATGCTGCAATTTGAGTTGCCCAATATGGGCAAATCTTCCAGATTCTTCTGCCCGACTTGTCCTTATGTGTGCCATTTGGAGAA
CAGGGTAAAGATCAAAAGAAAGCAGCATTTGTTAAAGAAGGAATTAGAACCCATAATCTCTGATGATGATATGAAAACAGCAGCTCAAACCGAAGCAACATGTCCAAATT
GTGCATTTGGTAAGGCTGCTTTTATACAAGTACAACTGAGATCGGCTGATGAACCTGCTACAACATTTTACAAGTGCATGAACGAGAACTGCAGACATAATTGGCGTGAG
GAT
mRNA sequenceShow/hide mRNA sequence
ATGGAGTTCTGCCCAACTTGCGGGAACATGCTGCAATTTGAGTTGCCCAATATGGGCAAATCTTCCAGATTCTTCTGCCCGACTTGTCCTTATGTGTGCCATTTGGAGAA
CAGGGTAAAGATCAAAAGAAAGCAGCATTTGTTAAAGAAGGAATTAGAACCCATAATCTCTGATGATGATATGAAAACAGCAGCTCAAACCGAAGCAACATGTCCAAATT
GTGCATTTGGTAAGGCTGCTTTTATACAAGTACAACTGAGATCGGCTGATGAACCTGCTACAACATTTTACAAGTGCATGAACGAGAACTGCAGACATAATTGGCGTGAG
GAT
Protein sequenceShow/hide protein sequence
MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVCHLENRVKIKRKQHLLKKELEPIISDDDMKTAAQTEATCPNCAFGKAAFIQVQLRSADEPATTFYKCMNENCRHNWRE
D