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MS013051 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS013051
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionRING-H2 finger protein ATL1-like
Genome locationscaffold997:45827..45970
RNA-Seq ExpressionMS013051
SyntenyMS013051
Gene Ontology termsGO:0016567 - protein ubiquitination (biological process)
GO:0016021 - integral component of membrane (cellular component)
InterPro domainsIPR001841 - Zinc finger, RING-type
IPR013083 - Zinc finger, RING/FYVE/PHD-type
IPR044675 - E3 ubiquitin-protein ligase RING1-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022155478.1 RING-H2 finger protein ATL1-like [Momordica charantia]1.8e-2191.67Show/hide
Query:  DGEECAICLNEFKKGEKCWIMSKCCHMFHRNCVDRWLKAERHCPLCRS
        DGEEC ICL EFKKGEKCWIMSKCCH+FHRNC+DRWLKAERHCPLCRS
Subjt:  DGEECAICLNEFKKGEKCWIMSKCCHMFHRNCVDRWLKAERHCPLCRS
XP_022158250.1 E3 ubiquitin-protein ligase RING1-like [Momordica charantia]2.7e-1472.34Show/hide
Query:  DGEECAICLNEFKKGEKCWIMSKCCHMFHRNCVDRWLKAERHCPLCR
        D +ECAICL EF++GEKC  MS+C H+FHRNC+DRWL+ ERHCPLCR
Subjt:  DGEECAICLNEFKKGEKCWIMSKCCHMFHRNCVDRWLKAERHCPLCR
XP_022158251.1 RING-H2 finger protein ATL1-like [Momordica charantia]4.2e-1575Show/hide
Query:  DGEECAICLNEFKKGEKCWIMSKCCHMFHRNCVDRWLKAERHCPLCRS
        D EECAICL++F++GEKC  MSKC H+FHR+C+DRWLKAERHCPLCR+
Subjt:  DGEECAICLNEFKKGEKCWIMSKCCHMFHRNCVDRWLKAERHCPLCRS
XP_022998666.1 RING-H2 finger protein ATL56-like [Cucurbita maxima]4.0e-1369.57Show/hide
Query:  EECAICLNEFKKGEKCWIMSKCCHMFHRNCVDRWLKAERHCPLCRS
        +ECAICL+EF+ G+KC  M+KC H+FHR C+DRWLK +RHCPLCRS
Subjt:  EECAICLNEFKKGEKCWIMSKCCHMFHRNCVDRWLKAERHCPLCRS
XP_023524567.1 RING-H2 finger protein ATL56-like [Cucurbita pepo subsp. pepo]2.0e-1267.39Show/hide
Query:  EECAICLNEFKKGEKCWIMSKCCHMFHRNCVDRWLKAERHCPLCRS
        +ECAICL+EF+  +KC  M+KC H+FHR C+DRWLK +RHCPLCRS
Subjt:  EECAICLNEFKKGEKCWIMSKCCHMFHRNCVDRWLKAERHCPLCRS
TrEMBL top hitse value%identityAlignment
A0A5D3BGV5 RING-H2 finger protein ATL66-like1.4e-1162.5Show/hide
Query:  DGEECAICLNEFKKGEKCWIMSKCCHMFHRNCVDRWLKAERHCPLCRS
        D  EC ICLN+F+  +KC  M KC H+FHR+C+DRWLK ER CPLCR+
Subjt:  DGEECAICLNEFKKGEKCWIMSKCCHMFHRNCVDRWLKAERHCPLCRS
A0A6J1DN25 RING-H2 finger protein ATL1-like8.6e-2291.67Show/hide
Query:  DGEECAICLNEFKKGEKCWIMSKCCHMFHRNCVDRWLKAERHCPLCRS
        DGEEC ICL EFKKGEKCWIMSKCCH+FHRNC+DRWLKAERHCPLCRS
Subjt:  DGEECAICLNEFKKGEKCWIMSKCCHMFHRNCVDRWLKAERHCPLCRS
A0A6J1DVB5 RING-type E3 ubiquitin transferase1.3e-1472.34Show/hide
Query:  DGEECAICLNEFKKGEKCWIMSKCCHMFHRNCVDRWLKAERHCPLCR
        D +ECAICL EF++GEKC  MS+C H+FHRNC+DRWL+ ERHCPLCR
Subjt:  DGEECAICLNEFKKGEKCWIMSKCCHMFHRNCVDRWLKAERHCPLCR
A0A6J1E0E9 RING-H2 finger protein ATL1-like2.1e-1575Show/hide
Query:  DGEECAICLNEFKKGEKCWIMSKCCHMFHRNCVDRWLKAERHCPLCRS
        D EECAICL++F++GEKC  MSKC H+FHR+C+DRWLKAERHCPLCR+
Subjt:  DGEECAICLNEFKKGEKCWIMSKCCHMFHRNCVDRWLKAERHCPLCRS
A0A6J1KAT3 RING-type E3 ubiquitin transferase1.9e-1369.57Show/hide
Query:  EECAICLNEFKKGEKCWIMSKCCHMFHRNCVDRWLKAERHCPLCRS
        +ECAICL+EF+ G+KC  M+KC H+FHR C+DRWLK +RHCPLCRS
Subjt:  EECAICLNEFKKGEKCWIMSKCCHMFHRNCVDRWLKAERHCPLCRS
SwissProt top hitse value%identityAlignment
P93823 RING-H2 finger protein ATL11.7e-1150Show/hide
Query:  DGEECAICLNEFKKGEKCWIMSKCCHMFHRNCVDRWLKAERHCPLCRS
        + +EC++CLNEF++ EK  I+  CCH+FH +C+D WL+   +CPLCR+
Subjt:  DGEECAICLNEFKKGEKCWIMSKCCHMFHRNCVDRWLKAERHCPLCRS
Q84W40 RING-H2 finger protein ATL111.1e-1051.11Show/hide
Query:  ECAICLNEFKKGEKCWIMSKCCHMFHRNCVDRWLKAERHCPLCRS
        EC++CLNEF+  E   ++ KCCH+FH  C+D WL++   CPLCR+
Subjt:  ECAICLNEFKKGEKCWIMSKCCHMFHRNCVDRWLKAERHCPLCRS
Q9LX93 E3 ubiquitin-protein ligase RING16.0e-1252.08Show/hide
Query:  DGEECAICLNEFKKGEKCWIMSKCCHMFHRNCVDRWLKAERHCPLCRS
        DG EC++CLNEF++ E   ++ KC H FH NC+D WL + ++CPLCR+
Subjt:  DGEECAICLNEFKKGEKCWIMSKCCHMFHRNCVDRWLKAERHCPLCRS
Q9SK92 E3 ubiquitin-protein ligase ATL153.3e-1048.89Show/hide
Query:  ECAICLNEFKKGEKCWIMSKCCHMFHRNCVDRWLKAERHCPLCRS
        EC +CLNEF+  E   ++ +CCH+FH  C+D WL+++  CPLCR+
Subjt:  ECAICLNEFKKGEKCWIMSKCCHMFHRNCVDRWLKAERHCPLCRS
Q9SRM0 RING-H2 finger protein ATL663.3e-1055.56Show/hide
Query:  EECAICLNEFKKGEKCWIMSKCCHMFHRNCVDRWLKAERHCPLCR
        +EC ICL  F++GEK  ++  C H +H  CVDRWLK E  CPLCR
Subjt:  EECAICLNEFKKGEKCWIMSKCCHMFHRNCVDRWLKAERHCPLCR
Arabidopsis top hitse value%identityAlignment
AT1G04360.1 RING/U-box superfamily protein1.2e-1250Show/hide
Query:  DGEECAICLNEFKKGEKCWIMSKCCHMFHRNCVDRWLKAERHCPLCRS
        + +EC++CLNEF++ EK  I+  CCH+FH +C+D WL+   +CPLCR+
Subjt:  DGEECAICLNEFKKGEKCWIMSKCCHMFHRNCVDRWLKAERHCPLCRS
AT1G22500.1 RING/U-box superfamily protein2.3e-1148.89Show/hide
Query:  ECAICLNEFKKGEKCWIMSKCCHMFHRNCVDRWLKAERHCPLCRS
        EC +CLNEF+  E   ++ +CCH+FH  C+D WL+++  CPLCR+
Subjt:  ECAICLNEFKKGEKCWIMSKCCHMFHRNCVDRWLKAERHCPLCRS
AT1G72200.1 RING/U-box superfamily protein8.0e-1251.11Show/hide
Query:  ECAICLNEFKKGEKCWIMSKCCHMFHRNCVDRWLKAERHCPLCRS
        EC++CLNEF+  E   ++ KCCH+FH  C+D WL++   CPLCR+
Subjt:  ECAICLNEFKKGEKCWIMSKCCHMFHRNCVDRWLKAERHCPLCRS
AT3G11110.1 RING/U-box superfamily protein2.3e-1155.56Show/hide
Query:  EECAICLNEFKKGEKCWIMSKCCHMFHRNCVDRWLKAERHCPLCR
        +EC ICL  F++GEK  ++  C H +H  CVDRWLK E  CPLCR
Subjt:  EECAICLNEFKKGEKCWIMSKCCHMFHRNCVDRWLKAERHCPLCR
AT5G10380.1 RING/U-box superfamily protein4.2e-1352.08Show/hide
Query:  DGEECAICLNEFKKGEKCWIMSKCCHMFHRNCVDRWLKAERHCPLCRS
        DG EC++CLNEF++ E   ++ KC H FH NC+D WL + ++CPLCR+
Subjt:  DGEECAICLNEFKKGEKCWIMSKCCHMFHRNCVDRWLKAERHCPLCRS

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
GACGGCGAAGAATGCGCGATTTGCCTGAACGAATTTAAGAAAGGAGAAAAGTGCTGGATCATGAGTAAATGCTGCCACATGTTTCACCGGAACTGCGTTGACCGGTGGCT
GAAGGCGGAGCGCCACTGCCCGCTTTGCCGGAGC
mRNA sequenceShow/hide mRNA sequence
GACGGCGAAGAATGCGCGATTTGCCTGAACGAATTTAAGAAAGGAGAAAAGTGCTGGATCATGAGTAAATGCTGCCACATGTTTCACCGGAACTGCGTTGACCGGTGGCT
GAAGGCGGAGCGCCACTGCCCGCTTTGCCGGAGC
Protein sequenceShow/hide protein sequence
DGEECAICLNEFKKGEKCWIMSKCCHMFHRNCVDRWLKAERHCPLCRS