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MS013052 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS013052
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionE3 ubiquitin-protein ligase RING1-like
Genome locationscaffold997:93485..93616
RNA-Seq ExpressionMS013052
SyntenyMS013052
Gene Ontology termsGO:0016567 - protein ubiquitination (biological process)
GO:0016021 - integral component of membrane (cellular component)
InterPro domainsIPR001841 - Zinc finger, RING-type
IPR013083 - Zinc finger, RING/FYVE/PHD-type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0067736.1 RING-H2 finger protein ATL52-like [Cucumis melo var. makuwa]2.6e-1165.12Show/hide
Query:  CAICFEGFEEKQVCRVIEKCGHFFHKDCVDQWLTMERRCPLCR
        CAIC E FE++++C V+E CGH FH+DC+DQWL +E RCPLCR
Subjt:  CAICFEGFEEKQVCRVIEKCGHFFHKDCVDQWLTMERRCPLCR

KAG6583431.1 RING-H2 finger protein ATL5, partial [Cucurbita argyrosperma subsp. sororia]1.5e-1165.12Show/hide
Query:  CAICFEGFEEKQVCRVIEKCGHFFHKDCVDQWLTMERRCPLCR
        CAIC EGF+E+++C V+++CGH FHK C+DQWL +E RCPLCR
Subjt:  CAICFEGFEEKQVCRVIEKCGHFFHKDCVDQWLTMERRCPLCR

XP_022158249.1 E3 ubiquitin-protein ligase RING1-like [Momordica charantia]2.6e-1997.73Show/hide
Query:  DCAICFEGFEEKQVCRVIEKCGHFFHKDCVDQWLTMERRCPLCR
        DCAICFEGFEEKQVCRVIEKCGHFFHKDCVDQWLTMER CPLCR
Subjt:  DCAICFEGFEEKQVCRVIEKCGHFFHKDCVDQWLTMERRCPLCR

XP_022158253.1 RING-H2 finger protein ATL14-like [Momordica charantia]1.4e-1272.09Show/hide
Query:  CAICFEGFEEKQVCRVIEKCGHFFHKDCVDQWLTMERRCPLCR
        CAIC EGF E++ C VIE CGHFFHKDC+D+WL +E RCPLCR
Subjt:  CAICFEGFEEKQVCRVIEKCGHFFHKDCVDQWLTMERRCPLCR

XP_031742489.1 RING-H2 finger protein ATL1-like [Cucumis sativus]8.1e-1369.77Show/hide
Query:  CAICFEGFEEKQVCRVIEKCGHFFHKDCVDQWLTMERRCPLCR
        CAIC EGF E+++C VIE CGHFFH+DC+++WL +ERRCPLCR
Subjt:  CAICFEGFEEKQVCRVIEKCGHFFHKDCVDQWLTMERRCPLCR

TrEMBL top hitse value%identityAlignment
A0A1S4E1K2 RING-type E3 ubiquitin transferase1.3e-1165.12Show/hide
Query:  CAICFEGFEEKQVCRVIEKCGHFFHKDCVDQWLTMERRCPLCR
        CAIC E FE++++C V+E CGH FH+DC+DQWL +E RCPLCR
Subjt:  CAICFEGFEEKQVCRVIEKCGHFFHKDCVDQWLTMERRCPLCR

A0A5A7VMH1 RING-H2 finger protein ATL52-like1.3e-1165.12Show/hide
Query:  CAICFEGFEEKQVCRVIEKCGHFFHKDCVDQWLTMERRCPLCR
        CAIC E FE++++C V+E CGH FH+DC+DQWL +E RCPLCR
Subjt:  CAICFEGFEEKQVCRVIEKCGHFFHKDCVDQWLTMERRCPLCR

A0A5D3BE50 RING-type E3 ubiquitin transferase1.3e-1165.12Show/hide
Query:  CAICFEGFEEKQVCRVIEKCGHFFHKDCVDQWLTMERRCPLCR
        CAIC E FE++++C V+E CGH FH+DC+DQWL +E RCPLCR
Subjt:  CAICFEGFEEKQVCRVIEKCGHFFHKDCVDQWLTMERRCPLCR

A0A6J1DVK4 RING-H2 finger protein ATL14-like6.7e-1372.09Show/hide
Query:  CAICFEGFEEKQVCRVIEKCGHFFHKDCVDQWLTMERRCPLCR
        CAIC EGF E++ C VIE CGHFFHKDC+D+WL +E RCPLCR
Subjt:  CAICFEGFEEKQVCRVIEKCGHFFHKDCVDQWLTMERRCPLCR

A0A6J1DYV0 E3 ubiquitin-protein ligase RING1-like1.3e-1997.73Show/hide
Query:  DCAICFEGFEEKQVCRVIEKCGHFFHKDCVDQWLTMERRCPLCR
        DCAICFEGFEEKQVCRVIEKCGHFFHKDCVDQWLTMER CPLCR
Subjt:  DCAICFEGFEEKQVCRVIEKCGHFFHKDCVDQWLTMERRCPLCR

SwissProt top hitse value%identityAlignment
Q5XF85 E3 ubiquitin-protein ligase ATL424.3e-0947.73Show/hide
Query:  DCAICFEGFEEKQVCRVIEKCGHFFHKDCVDQWLTMERRCPLCR
        DC++C   FE  ++ R++ KC H FH  C+DQWL     CPLCR
Subjt:  DCAICFEGFEEKQVCRVIEKCGHFFHKDCVDQWLTMERRCPLCR

Q9LZJ6 RING-H2 finger protein ATL52.5e-0950Show/hide
Query:  DCAICFEGFEEKQVCRVIEKCGHFFHKDCVDQWLTMERRCPLCR
        +C++C   FEE    RV+ KCGH FH DC+D W      CPLCR
Subjt:  DCAICFEGFEEKQVCRVIEKCGHFFHKDCVDQWLTMERRCPLCR

Q9M0C3 RING-H2 finger protein ATL143.0e-1050Show/hide
Query:  DCAICFEGFEEKQVCRVIEKCGHFFHKDCVDQWLTMERRCPLCR
        DC +C +GF + Q CR + +CGH FH+ CVD WL     CP+CR
Subjt:  DCAICFEGFEEKQVCRVIEKCGHFFHKDCVDQWLTMERRCPLCR

Q9SJJ7 RING-H2 finger protein ATL575.1e-1056.82Show/hide
Query:  DCAICFEGFEEKQVCRVIEKCGHFFHKDCVDQWLTMERRCPLCR
        DC IC   FEE +  +VI  CGH FH DCVD WL+    CPLCR
Subjt:  DCAICFEGFEEKQVCRVIEKCGHFFHKDCVDQWLTMERRCPLCR

Q9ZV51 RING-H2 finger protein ATL561.3e-1052.27Show/hide
Query:  DCAICFEGFEEKQVCRVIEKCGHFFHKDCVDQWLTMERRCPLCR
        DC +CF+GF + Q CR +  CGH FH+ CVD WL     CP+CR
Subjt:  DCAICFEGFEEKQVCRVIEKCGHFFHKDCVDQWLTMERRCPLCR

Arabidopsis top hitse value%identityAlignment
AT2G18670.1 RING/U-box superfamily protein9.5e-1252.27Show/hide
Query:  DCAICFEGFEEKQVCRVIEKCGHFFHKDCVDQWLTMERRCPLCR
        DC +CF+GF + Q CR +  CGH FH+ CVD WL     CP+CR
Subjt:  DCAICFEGFEEKQVCRVIEKCGHFFHKDCVDQWLTMERRCPLCR

AT2G27940.1 RING/U-box superfamily protein3.6e-1156.82Show/hide
Query:  DCAICFEGFEEKQVCRVIEKCGHFFHKDCVDQWLTMERRCPLCR
        DC IC   FEE +  +VI  CGH FH DCVD WL+    CPLCR
Subjt:  DCAICFEGFEEKQVCRVIEKCGHFFHKDCVDQWLTMERRCPLCR

AT2G47560.1 RING/U-box superfamily protein3.1e-1047.73Show/hide
Query:  DCAICFEGFEEKQVCRVIEKCGHFFHKDCVDQWLTMERRCPLCR
        +C++C   FEE+   R++ KCGH FH DC+D W      CPLCR
Subjt:  DCAICFEGFEEKQVCRVIEKCGHFFHKDCVDQWLTMERRCPLCR

AT3G62690.1 AtL51.8e-1050Show/hide
Query:  DCAICFEGFEEKQVCRVIEKCGHFFHKDCVDQWLTMERRCPLCR
        +C++C   FEE    RV+ KCGH FH DC+D W      CPLCR
Subjt:  DCAICFEGFEEKQVCRVIEKCGHFFHKDCVDQWLTMERRCPLCR

AT4G30370.1 RING/U-box superfamily protein2.1e-1150Show/hide
Query:  DCAICFEGFEEKQVCRVIEKCGHFFHKDCVDQWLTMERRCPLCR
        DC +C +GF + Q CR + +CGH FH+ CVD WL     CP+CR
Subjt:  DCAICFEGFEEKQVCRVIEKCGHFFHKDCVDQWLTMERRCPLCR


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
GACTGCGCGATATGTTTCGAGGGATTTGAGGAGAAACAAGTGTGCCGAGTAATTGAGAAATGCGGCCATTTTTTCCATAAGGATTGCGTCGATCAGTGGCTCACTATGGA
GCGCCGTTGCCCGCTGTGCCGC
mRNA sequenceShow/hide mRNA sequence
GACTGCGCGATATGTTTCGAGGGATTTGAGGAGAAACAAGTGTGCCGAGTAATTGAGAAATGCGGCCATTTTTTCCATAAGGATTGCGTCGATCAGTGGCTCACTATGGA
GCGCCGTTGCCCGCTGTGCCGC
Protein sequenceShow/hide protein sequence
DCAICFEGFEEKQVCRVIEKCGHFFHKDCVDQWLTMERRCPLCR