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MS013053 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS013053
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionRING-type E3 ubiquitin transferase
Genome locationscaffold997:119780..120010
RNA-Seq ExpressionMS013053
SyntenyMS013053
Gene Ontology termsGO:0016567 - protein ubiquitination (biological process)
GO:0016021 - integral component of membrane (cellular component)
InterPro domainsIPR001841 - Zinc finger, RING-type
IPR013083 - Zinc finger, RING/FYVE/PHD-type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6583430.1 putative RING-H2 finger protein ATL12, partial [Cucurbita argyrosperma subsp. sororia]1.2e-1652.7Show/hide
Query:  STVALKRLFEYGKGGKDGKNADCIFCLEEFKKGELCRMLMNCKHVFHTNCIDKWTVKNDYCPICRSSILARVIY
        + V   RLF+YG+ G  G+NADC  CL+EF +GE+CRML  CKHVFH  CID+W     +CP+CRS +  R I+
Subjt:  STVALKRLFEYGKGGKDGKNADCIFCLEEFKKGELCRMLMNCKHVFHTNCIDKWTVKNDYCPICRSSILARVIY

XP_022964750.1 RING-H2 finger protein ATL39-like [Cucurbita moschata]4.3e-1754.05Show/hide
Query:  STVALKRLFEYGKGGKDGKNADCIFCLEEFKKGELCRMLMNCKHVFHTNCIDKWTVKNDYCPICRSSILARVIY
        + V   RLF+YG+ G  GKNADC  CL+EF +GE+CRML  CKHVFH  CID+W     +CP+CRS +  R I+
Subjt:  STVALKRLFEYGKGGKDGKNADCIFCLEEFKKGELCRMLMNCKHVFHTNCIDKWTVKNDYCPICRSSILARVIY

XP_022970579.1 RING-H2 finger protein ATL14-like [Cucurbita maxima]1.1e-1754.05Show/hide
Query:  STVALKRLFEYGKGGKDGKNADCIFCLEEFKKGELCRMLMNCKHVFHTNCIDKWTVKNDYCPICRSSILARVIY
        + V   RLF+YG+ G +GKNADC  CL+EF +GE+CRML  CKHVFH  CID+W     +CP+CRS +  R I+
Subjt:  STVALKRLFEYGKGGKDGKNADCIFCLEEFKKGELCRMLMNCKHVFHTNCIDKWTVKNDYCPICRSSILARVIY

XP_023520573.1 RING-H2 finger protein ATL51-like [Cucurbita pepo subsp. pepo]4.3e-1754.05Show/hide
Query:  STVALKRLFEYGKGGKDGKNADCIFCLEEFKKGELCRMLMNCKHVFHTNCIDKWTVKNDYCPICRSSILARVIY
        + V   RLF+YG+ G  GKNADC  CL+EF +GE+CRML  CKHVFH  CID+W     +CP+CRS +  R I+
Subjt:  STVALKRLFEYGKGGKDGKNADCIFCLEEFKKGELCRMLMNCKHVFHTNCIDKWTVKNDYCPICRSSILARVIY

XP_038895799.1 E3 ubiquitin-protein ligase RING1-like [Benincasa hispida]1.0e-1854.05Show/hide
Query:  STVALKRLFEYGKGGKDGKNADCIFCLEEFKKGELCRMLMNCKHVFHTNCIDKWTVKNDYCPICRSSILARVIY
        + V   +LF+YG+GG  GKNADC  CL+EF +GE+CRML  CKHVFH  CID+W     +CP+CRS +  R++Y
Subjt:  STVALKRLFEYGKGGKDGKNADCIFCLEEFKKGELCRMLMNCKHVFHTNCIDKWTVKNDYCPICRSSILARVIY

TrEMBL top hitse value%identityAlignment
A0A0A0M0H1 RING-type E3 ubiquitin transferase7.8e-1757.97Show/hide
Query:  RLFEYG-KGGKDGKNADCIFCLEEFKKGELCRMLMNCKHVFHTNCIDKWTVKNDYCPICRSSILARVIY
        RLF+YG  GG  GKNADC  CL+EF +GE+CRML  CKHVFH  CID+W      CP+CRS +  R++Y
Subjt:  RLFEYG-KGGKDGKNADCIFCLEEFKKGELCRMLMNCKHVFHTNCIDKWTVKNDYCPICRSSILARVIY

A0A5A7VKM2 RING-H2 finger protein ATL39-like1.0e-1657.97Show/hide
Query:  RLFEYG-KGGKDGKNADCIFCLEEFKKGELCRMLMNCKHVFHTNCIDKWTVKNDYCPICRSSILARVIY
        RLF+YG  GG  GKNADC  CL+EF +GE+CRML  CKHVFH  CID+W      CP+CRS +  R++Y
Subjt:  RLFEYG-KGGKDGKNADCIFCLEEFKKGELCRMLMNCKHVFHTNCIDKWTVKNDYCPICRSSILARVIY

A0A5D3BEF0 RING-H2 finger protein ATL39-like1.0e-1657.97Show/hide
Query:  RLFEYG-KGGKDGKNADCIFCLEEFKKGELCRMLMNCKHVFHTNCIDKWTVKNDYCPICRSSILARVIY
        RLF+YG  GG  GKNADC  CL+EF +GE+CRML  CKHVFH  CID+W      CP+CRS +  R++Y
Subjt:  RLFEYG-KGGKDGKNADCIFCLEEFKKGELCRMLMNCKHVFHTNCIDKWTVKNDYCPICRSSILARVIY

A0A6J1HLQ2 RING-type E3 ubiquitin transferase2.1e-1754.05Show/hide
Query:  STVALKRLFEYGKGGKDGKNADCIFCLEEFKKGELCRMLMNCKHVFHTNCIDKWTVKNDYCPICRSSILARVIY
        + V   RLF+YG+ G  GKNADC  CL+EF +GE+CRML  CKHVFH  CID+W     +CP+CRS +  R I+
Subjt:  STVALKRLFEYGKGGKDGKNADCIFCLEEFKKGELCRMLMNCKHVFHTNCIDKWTVKNDYCPICRSSILARVIY

A0A6J1I603 RING-type E3 ubiquitin transferase5.4e-1854.05Show/hide
Query:  STVALKRLFEYGKGGKDGKNADCIFCLEEFKKGELCRMLMNCKHVFHTNCIDKWTVKNDYCPICRSSILARVIY
        + V   RLF+YG+ G +GKNADC  CL+EF +GE+CRML  CKHVFH  CID+W     +CP+CRS +  R I+
Subjt:  STVALKRLFEYGKGGKDGKNADCIFCLEEFKKGELCRMLMNCKHVFHTNCIDKWTVKNDYCPICRSSILARVIY

SwissProt top hitse value%identityAlignment
P87237 Uncharacterized RING finger protein C4G3.12c8.9e-1043.33Show/hide
Query:  LFEYGKGGKDGKNADCIFCLEEFKKGELCRMLMNCKHVFHTNCIDKW-TVKNDYCPICRS
        LF Y           C+ CLE +  G++CR L  CKH FH  CID+W T  N+ CP+CR+
Subjt:  LFEYGKGGKDGKNADCIFCLEEFKKGELCRMLMNCKHVFHTNCIDKW-TVKNDYCPICRS

Q9M0C3 RING-H2 finger protein ATL142.8e-1140.91Show/hide
Query:  LKRL--FEYGKGGKDGKNADCIFCLEEFKKGELCRMLMNCKHVFHTNCIDKWTVKNDYCPICRSSI
        +KRL  F+Y +   +    DC+ C++ F++G+ CR L  C HVFH  C+D W +K   CPICR  +
Subjt:  LKRL--FEYGKGGKDGKNADCIFCLEEFKKGELCRMLMNCKHVFHTNCIDKWTVKNDYCPICRSSI

Q9SG96 RING-H2 finger protein ATL728.1e-1145.76Show/hide
Query:  YGKGGKDGKNADCIFCLEEFKKGELCRMLMNCKHVFHTNCIDKWTVKNDYCPICRSSIL
        YG G  D K  +C+ CL +F+ GE  R+L  C H FH  CID W +    CP CR S+L
Subjt:  YGKGGKDGKNADCIFCLEEFKKGELCRMLMNCKHVFHTNCIDKWTVKNDYCPICRSSIL

Q9SJJ7 RING-H2 finger protein ATL571.1e-1040.32Show/hide
Query:  LFEYGKGGKDGKNADCIFCLEEFKKGELCRMLMNCKHVFHTNCIDKWTVKNDYCPICRSSIL
        ++ Y K  K  +N DC+ CL +F++GE  +++ +C HVFH +C+D W      CP+CRS+ L
Subjt:  LFEYGKGGKDGKNADCIFCLEEFKKGELCRMLMNCKHVFHTNCIDKWTVKNDYCPICRSSIL

Q9ZV51 RING-H2 finger protein ATL564.0e-1045.83Show/hide
Query:  ADCIFCLEEFKKGELCRMLMNCKHVFHTNCIDKWTVKNDYCPICRSSI
        +DC+ C + F++G+ CR L  C HVFH  C+D W +K   CPICR+ +
Subjt:  ADCIFCLEEFKKGELCRMLMNCKHVFHTNCIDKWTVKNDYCPICRSSI

Arabidopsis top hitse value%identityAlignment
AT2G18670.1 RING/U-box superfamily protein2.9e-1145.83Show/hide
Query:  ADCIFCLEEFKKGELCRMLMNCKHVFHTNCIDKWTVKNDYCPICRSSI
        +DC+ C + F++G+ CR L  C HVFH  C+D W +K   CPICR+ +
Subjt:  ADCIFCLEEFKKGELCRMLMNCKHVFHTNCIDKWTVKNDYCPICRSSI

AT2G27940.1 RING/U-box superfamily protein7.5e-1240.32Show/hide
Query:  LFEYGKGGKDGKNADCIFCLEEFKKGELCRMLMNCKHVFHTNCIDKWTVKNDYCPICRSSIL
        ++ Y K  K  +N DC+ CL +F++GE  +++ +C HVFH +C+D W      CP+CRS+ L
Subjt:  LFEYGKGGKDGKNADCIFCLEEFKKGELCRMLMNCKHVFHTNCIDKWTVKNDYCPICRSSIL

AT2G28920.1 RING/U-box superfamily protein8.9e-1345.59Show/hide
Query:  PSTVALKRLFEYGKGGKDGKNAD-CIFCLEEFKKGELCRMLMNCKHVFHTNCIDKWTVKNDYCPICRS
        P  V L +      G  DG  AD C+ CLE+FK  ++ R+L+ CKHVFH +CID W      CPICR+
Subjt:  PSTVALKRLFEYGKGGKDGKNAD-CIFCLEEFKKGELCRMLMNCKHVFHTNCIDKWTVKNDYCPICRS

AT3G10910.1 RING/U-box superfamily protein5.7e-1245.76Show/hide
Query:  YGKGGKDGKNADCIFCLEEFKKGELCRMLMNCKHVFHTNCIDKWTVKNDYCPICRSSIL
        YG G  D K  +C+ CL +F+ GE  R+L  C H FH  CID W +    CP CR S+L
Subjt:  YGKGGKDGKNADCIFCLEEFKKGELCRMLMNCKHVFHTNCIDKWTVKNDYCPICRSSIL

AT4G30370.1 RING/U-box superfamily protein2.0e-1240.91Show/hide
Query:  LKRL--FEYGKGGKDGKNADCIFCLEEFKKGELCRMLMNCKHVFHTNCIDKWTVKNDYCPICRSSI
        +KRL  F+Y +   +    DC+ C++ F++G+ CR L  C HVFH  C+D W +K   CPICR  +
Subjt:  LKRL--FEYGKGGKDGKNADCIFCLEEFKKGELCRMLMNCKHVFHTNCIDKWTVKNDYCPICRSSI


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
CCGTCGACGGTGGCGCTTAAAAGGCTTTTTGAATATGGAAAAGGCGGAAAGGACGGGAAAAACGCGGATTGCATCTTCTGCTTGGAGGAGTTCAAGAAAGGTGAGTTGTG
CCGCATGCTCATGAATTGCAAACACGTTTTTCATACAAATTGCATCGACAAGTGGACTGTCAAAAATGATTATTGCCCTATTTGTCGTTCCTCTATTCTTGCTCGTGTCA
TTTACTGTTCA
mRNA sequenceShow/hide mRNA sequence
CCGTCGACGGTGGCGCTTAAAAGGCTTTTTGAATATGGAAAAGGCGGAAAGGACGGGAAAAACGCGGATTGCATCTTCTGCTTGGAGGAGTTCAAGAAAGGTGAGTTGTG
CCGCATGCTCATGAATTGCAAACACGTTTTTCATACAAATTGCATCGACAAGTGGACTGTCAAAAATGATTATTGCCCTATTTGTCGTTCCTCTATTCTTGCTCGTGTCA
TTTACTGTTCA
Protein sequenceShow/hide protein sequence
PSTVALKRLFEYGKGGKDGKNADCIFCLEEFKKGELCRMLMNCKHVFHTNCIDKWTVKNDYCPICRSSILARVIYCS