; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MS013055 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS013055
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionRING-type E3 ubiquitin transferase
Genome locationscaffold997:131598..132035
RNA-Seq ExpressionMS013055
SyntenyMS013055
Gene Ontology termsGO:0016567 - protein ubiquitination (biological process)
GO:0016021 - integral component of membrane (cellular component)
InterPro domainsIPR001841 - Zinc finger, RING-type
IPR013083 - Zinc finger, RING/FYVE/PHD-type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6583430.1 putative RING-H2 finger protein ATL12, partial [Cucurbita argyrosperma subsp. sororia]3.4e-4762Show/hide
Query:  PPPPPALPSSILSSLDLDFLNIAGMSSLALMIVYFIYTCYEHKYSQR-------QTAAAAAGGGEERRAAASTAVMRTKLFQYGERGIEGRNADCSICLD
        PPP P L   +LS++DLDFLN AG+  LA+ I+YFIYT YEHKY  R       ++AA AA G        +TAV+ T+LFQYGERG+ G+NADCSICLD
Subjt:  PPPPPALPSSILSSLDLDFLNIAGMSSLALMIVYFIYTCYEHKYSQR-------QTAAAAAGGGEERRAAASTAVMRTKLFQYGERGIEGRNADCSICLD

Query:  EFSEGQVCRMLPKCKHIFHRFCIDQWLPNQPHCPLCRSPVRVRIVYSNQS
        EF EG++CRMLPKCKH+FHRFCIDQWLPN+ HCPLCRSPV VR +++++S
Subjt:  EFSEGQVCRMLPKCKHIFHRFCIDQWLPNQPHCPLCRSPVRVRIVYSNQS

XP_022964750.1 RING-H2 finger protein ATL39-like [Cucurbita moschata]7.5e-4762.84Show/hide
Query:  PPPPPALPSSILSSLDLDFLNIAGMSSLALMIVYFIYTCYEHKYSQRQT-----AAAAAGGGEERRAAASTAVMRTKLFQYGERGIEGRNADCSICLDEF
        PPP P L   +LS++DLDFLN AG+  LA+ I+YFIYT YEHKY  R        +A    GE+R  A  TAV+ T+LFQYGERG+ G+NADCSICLDEF
Subjt:  PPPPPALPSSILSSLDLDFLNIAGMSSLALMIVYFIYTCYEHKYSQRQT-----AAAAAGGGEERRAAASTAVMRTKLFQYGERGIEGRNADCSICLDEF

Query:  SEGQVCRMLPKCKHIFHRFCIDQWLPNQPHCPLCRSPVRVRIVYSNQS
         EG++CRMLPKCKH+FHRFCIDQWLPN+ HCPLCRSPV VR +++++S
Subjt:  SEGQVCRMLPKCKHIFHRFCIDQWLPNQPHCPLCRSPVRVRIVYSNQS

XP_022970579.1 RING-H2 finger protein ATL14-like [Cucurbita maxima]4.7e-4965.13Show/hide
Query:  PPPPPALPSSILSSLDLDFLNIAGMSSLALMIVYFIYTCYEHKYSQR-------QTAAAAAGG--GEERRAAASTAVMRTKLFQYGERGIEGRNADCSIC
        PPPPP L   +LS++DLDFLN AG+  LA+ I+YFIYT YEHKY  R       ++AA A+ G  GE+RR A  TAV+ T+LFQYGERG+EG+NADCSIC
Subjt:  PPPPPALPSSILSSLDLDFLNIAGMSSLALMIVYFIYTCYEHKYSQR-------QTAAAAAGG--GEERRAAASTAVMRTKLFQYGERGIEGRNADCSIC

Query:  LDEFSEGQVCRMLPKCKHIFHRFCIDQWLPNQPHCPLCRSPVRVRIVYSNQS
        LDEF EG++CRMLPKCKH+FHRFCIDQWLPN+ HCPLCRSPV VR +++++S
Subjt:  LDEFSEGQVCRMLPKCKHIFHRFCIDQWLPNQPHCPLCRSPVRVRIVYSNQS

XP_023520573.1 RING-H2 finger protein ATL51-like [Cucurbita pepo subsp. pepo]2.6e-4762Show/hide
Query:  PPPPPALPSSILSSLDLDFLNIAGMSSLALMIVYFIYTCYEHKYSQR-------QTAAAAAGGGEERRAAASTAVMRTKLFQYGERGIEGRNADCSICLD
        PPP P L   +LS++DLDFLN AG+  LA+ I+YFIYT YEHKY  R       ++AA AA G        +TAV+ T+LFQYGERG+ G+NADCSICLD
Subjt:  PPPPPALPSSILSSLDLDFLNIAGMSSLALMIVYFIYTCYEHKYSQR-------QTAAAAAGGGEERRAAASTAVMRTKLFQYGERGIEGRNADCSICLD

Query:  EFSEGQVCRMLPKCKHIFHRFCIDQWLPNQPHCPLCRSPVRVRIVYSNQS
        EF EG++CRMLPKCKH+FHRFCIDQWLPN+ HCPLCRSPV VR +++++S
Subjt:  EFSEGQVCRMLPKCKHIFHRFCIDQWLPNQPHCPLCRSPVRVRIVYSNQS

XP_038895799.1 E3 ubiquitin-protein ligase RING1-like [Benincasa hispida]1.1e-5065.43Show/hide
Query:  LDPPPPPPA-LPSSILSSLDLDFLNIAGMSSLALMIVYFIYTCYEHKYSQRQ------------TAA---AAAGGGEERRAAASTAVMRTKLFQYGERGI
        + PPPP PA L   +LS+LDLDFLN AG+S+LALMIVYFI+TCYE KY  R             T A   A+  G    R  ASTAV+ TKLFQYGE G+
Subjt:  LDPPPPPPA-LPSSILSSLDLDFLNIAGMSSLALMIVYFIYTCYEHKYSQRQ------------TAA---AAAGGGEERRAAASTAVMRTKLFQYGERGI

Query:  EGRNADCSICLDEFSEGQVCRMLPKCKHIFHRFCIDQWLPNQPHCPLCRSPVRVRIVYSNQS
         G+NADCSICLDEFSEG++CRMLPKCKH+FHRFCIDQWLPN+ HCP+CRSPV VRIVYSN S
Subjt:  EGRNADCSICLDEFSEGQVCRMLPKCKHIFHRFCIDQWLPNQPHCPLCRSPVRVRIVYSNQS

TrEMBL top hitse value%identityAlignment
A0A1S3C5T1 RING-H2 finger protein ATL39-like1.2e-4558.97Show/hide
Query:  PPPPPPALPSSILSSLDLDFLNIAGMSSLALMIVYFIYTCYEHKYSQR--------------QTAAAAAGGGEERRAAASTAVMRTKLFQYG-ERGIEGR
        PPPPP  LP   LS+LDLDFLN+AG+S+LA+M +YFI+TCYE K+  R                + A+  G   RR  +S AV+ T+LFQYG   G+ G+
Subjt:  PPPPPPALPSSILSSLDLDFLNIAGMSSLALMIVYFIYTCYEHKYSQR--------------QTAAAAAGGGEERRAAASTAVMRTKLFQYG-ERGIEGR

Query:  NADCSICLDEFSEGQVCRMLPKCKHIFHRFCIDQWLPNQPHCPLCRSPVRVRIVYS
        NADCSICLDEF+EG++CRMLPKCKH+FHRFCIDQWLPN+ +CP+CRSPV VR+VYS
Subjt:  NADCSICLDEFSEGQVCRMLPKCKHIFHRFCIDQWLPNQPHCPLCRSPVRVRIVYS

A0A5A7VKM2 RING-H2 finger protein ATL39-like1.2e-4558.97Show/hide
Query:  PPPPPPALPSSILSSLDLDFLNIAGMSSLALMIVYFIYTCYEHKYSQR--------------QTAAAAAGGGEERRAAASTAVMRTKLFQYG-ERGIEGR
        PPPPP  LP   LS+LDLDFLN+AG+S+LA+M +YFI+TCYE K+  R                + A+  G   RR  +S AV+ T+LFQYG   G+ G+
Subjt:  PPPPPPALPSSILSSLDLDFLNIAGMSSLALMIVYFIYTCYEHKYSQR--------------QTAAAAAGGGEERRAAASTAVMRTKLFQYG-ERGIEGR

Query:  NADCSICLDEFSEGQVCRMLPKCKHIFHRFCIDQWLPNQPHCPLCRSPVRVRIVYS
        NADCSICLDEF+EG++CRMLPKCKH+FHRFCIDQWLPN+ +CP+CRSPV VR+VYS
Subjt:  NADCSICLDEFSEGQVCRMLPKCKHIFHRFCIDQWLPNQPHCPLCRSPVRVRIVYS

A0A5D3BEF0 RING-H2 finger protein ATL39-like1.2e-4558.97Show/hide
Query:  PPPPPPALPSSILSSLDLDFLNIAGMSSLALMIVYFIYTCYEHKYSQR--------------QTAAAAAGGGEERRAAASTAVMRTKLFQYG-ERGIEGR
        PPPPP  LP   LS+LDLDFLN+AG+S+LA+M +YFI+TCYE K+  R                + A+  G   RR  +S AV+ T+LFQYG   G+ G+
Subjt:  PPPPPPALPSSILSSLDLDFLNIAGMSSLALMIVYFIYTCYEHKYSQR--------------QTAAAAAGGGEERRAAASTAVMRTKLFQYG-ERGIEGR

Query:  NADCSICLDEFSEGQVCRMLPKCKHIFHRFCIDQWLPNQPHCPLCRSPVRVRIVYS
        NADCSICLDEF+EG++CRMLPKCKH+FHRFCIDQWLPN+ +CP+CRSPV VR+VYS
Subjt:  NADCSICLDEFSEGQVCRMLPKCKHIFHRFCIDQWLPNQPHCPLCRSPVRVRIVYS

A0A6J1HLQ2 RING-type E3 ubiquitin transferase3.6e-4762.84Show/hide
Query:  PPPPPALPSSILSSLDLDFLNIAGMSSLALMIVYFIYTCYEHKYSQRQT-----AAAAAGGGEERRAAASTAVMRTKLFQYGERGIEGRNADCSICLDEF
        PPP P L   +LS++DLDFLN AG+  LA+ I+YFIYT YEHKY  R        +A    GE+R  A  TAV+ T+LFQYGERG+ G+NADCSICLDEF
Subjt:  PPPPPALPSSILSSLDLDFLNIAGMSSLALMIVYFIYTCYEHKYSQRQT-----AAAAAGGGEERRAAASTAVMRTKLFQYGERGIEGRNADCSICLDEF

Query:  SEGQVCRMLPKCKHIFHRFCIDQWLPNQPHCPLCRSPVRVRIVYSNQS
         EG++CRMLPKCKH+FHRFCIDQWLPN+ HCPLCRSPV VR +++++S
Subjt:  SEGQVCRMLPKCKHIFHRFCIDQWLPNQPHCPLCRSPVRVRIVYSNQS

A0A6J1I603 RING-type E3 ubiquitin transferase2.3e-4965.13Show/hide
Query:  PPPPPALPSSILSSLDLDFLNIAGMSSLALMIVYFIYTCYEHKYSQR-------QTAAAAAGG--GEERRAAASTAVMRTKLFQYGERGIEGRNADCSIC
        PPPPP L   +LS++DLDFLN AG+  LA+ I+YFIYT YEHKY  R       ++AA A+ G  GE+RR A  TAV+ T+LFQYGERG+EG+NADCSIC
Subjt:  PPPPPALPSSILSSLDLDFLNIAGMSSLALMIVYFIYTCYEHKYSQR-------QTAAAAAGG--GEERRAAASTAVMRTKLFQYGERGIEGRNADCSIC

Query:  LDEFSEGQVCRMLPKCKHIFHRFCIDQWLPNQPHCPLCRSPVRVRIVYSNQS
        LDEF EG++CRMLPKCKH+FHRFCIDQWLPN+ HCPLCRSPV VR +++++S
Subjt:  LDEFSEGQVCRMLPKCKHIFHRFCIDQWLPNQPHCPLCRSPVRVRIVYSNQS

SwissProt top hitse value%identityAlignment
P0C041 Putative RING-H2 finger protein ATL539.6e-1350Show/hide
Query:  ERGIEGRNADCSICLDEFSEGQVCRMLPKCKHIFHRFCIDQWLPNQPHCPLCRSPVRV
        + G +    DCSICL EF+E +  R+LPKC H FH  CID+WL +  +CPLCR+ + V
Subjt:  ERGIEGRNADCSICLDEFSEGQVCRMLPKCKHIFHRFCIDQWLPNQPHCPLCRSPVRV

Q9LF64 RING-H2 finger protein ATL521.6e-1230.56Show/hide
Query:  PPPPPAL-----PSSILSSLDLDFLNIAGMSSLALMIV--YFIYTCYEHKYSQRQTA------------------AAAAGGGEERRAAASTAVMRTKLFQ
        PPPPP+       SS  SS     + + G+ + AL++V  Y + + Y H++ Q  ++                   +  G G       S  V +   ++
Subjt:  PPPPPAL-----PSSILSSLDLDFLNIAGMSSLALMIV--YFIYTCYEHKYSQRQTA------------------AAAAGGGEERRAAASTAVMRTKLFQ

Query:  YGERGIEGRNADCSICLDEFSEGQVCRMLPKCKHIFHRFCIDQWLPNQPHCPLCRSPV------------RVRIVYSNQS
         G+  ++G  +DCS+CL EF E +  R+LPKC H FH  CID WL +  +CPLCR+ V             V +V +NQS
Subjt:  YGERGIEGRNADCSICLDEFSEGQVCRMLPKCKHIFHRFCIDQWLPNQPHCPLCRSPV------------RVRIVYSNQS

Q9LX93 E3 ubiquitin-protein ligase RING12.1e-1535.58Show/hide
Query:  PPPPPPALPSSILSSLDLDFLNIAGMSSLALMIVYFIYTCYEHKYSQRQTAAAAAGGGE-----------------------------ERRAAASTAVMR
        PPPPPP  P   LS L    + + G   L L +V+F+Y    H   QR+ +AA+   G+                              R A  S  V+ 
Subjt:  PPPPPPALPSSILSSLDLDFLNIAGMSSLALMIVYFIYTCYEHKYSQRQTAAAAAGGGE-----------------------------ERRAAASTAVMR

Query:  TKLFQYGERGIEGRNADCSICLDEFSEGQVCRMLPKCKHIFHRFCIDQWLPNQPHCPLCRSPV
           F+ GE  I+G   +CS+CL+EF E +  R+LPKC H FH  CID WL +  +CPLCR+PV
Subjt:  TKLFQYGERGIEGRNADCSICLDEFSEGQVCRMLPKCKHIFHRFCIDQWLPNQPHCPLCRSPV

Q9LZJ6 RING-H2 finger protein ATL51.3e-1243.48Show/hide
Query:  TAVMRTKLFQYGERGIEGRNADCSICLDEFSEGQVCRMLPKCKHIFHRFCIDQWLPNQPHCPLCRSPVR
        T + +  +F Y  +  E    +CS+CL EF E    R+LPKC H+FH  CID W  ++  CPLCR+PV+
Subjt:  TAVMRTKLFQYGERGIEGRNADCSICLDEFSEGQVCRMLPKCKHIFHRFCIDQWLPNQPHCPLCRSPVR

Q9M0C3 RING-H2 finger protein ATL141.3e-1232.65Show/hide
Query:  PPPPPPA-----LPSSILSSLDLDFLNIAG--------MSSLALMIVYFIYTCYEHKYSQRQTAAAAAGGGEERRAAASTAVMRTKLFQYGERGIEGRNA
        P PPPP      LP+ ILS+  +  + I          ++SL     +  Y   +  Y  R          E     +   V R   F+Y E   E    
Subjt:  PPPPPPA-----LPSSILSSLDLDFLNIAG--------MSSLALMIVYFIYTCYEHKYSQRQTAAAAAGGGEERRAAASTAVMRTKLFQYGERGIEGRNA

Query:  DCSICLDEFSEGQVCRMLPKCKHIFHRFCIDQWLPNQPHCPLCRSPV
        DC +C+D F +GQ CR LP+C H+FHR C+D WL     CP+CR  V
Subjt:  DCSICLDEFSEGQVCRMLPKCKHIFHRFCIDQWLPNQPHCPLCRSPV

Arabidopsis top hitse value%identityAlignment
AT2G18670.1 RING/U-box superfamily protein1.2e-1332.17Show/hide
Query:  PPPPPPA------LPSSILSSLDLDFLNIAGMSSLALMIVYFIYTCYEHKYSQRQTAAAAAGGGEERRAAASTAVMRTKLFQYGERGIEGR-NADCSICL
        PPP P        L   I+ S+   FL + G++S+ L++   + + + H   +R+     +  G      +S  V +   F++ E     R  +DC +C 
Subjt:  PPPPPPA------LPSSILSSLDLDFLNIAGMSSLALMIVYFIYTCYEHKYSQRQTAAAAAGGGEERRAAASTAVMRTKLFQYGERGIEGR-NADCSICL

Query:  DEFSEGQVCRMLPKCKHIFHRFCIDQWLPNQPHCPLCRSPVRV
        D F +GQ CR LP C H+FHR C+D WL     CP+CR+ VR+
Subjt:  DEFSEGQVCRMLPKCKHIFHRFCIDQWLPNQPHCPLCRSPVRV

AT4G30370.1 RING/U-box superfamily protein8.9e-1432.65Show/hide
Query:  PPPPPPA-----LPSSILSSLDLDFLNIAG--------MSSLALMIVYFIYTCYEHKYSQRQTAAAAAGGGEERRAAASTAVMRTKLFQYGERGIEGRNA
        P PPPP      LP+ ILS+  +  + I          ++SL     +  Y   +  Y  R          E     +   V R   F+Y E   E    
Subjt:  PPPPPPA-----LPSSILSSLDLDFLNIAG--------MSSLALMIVYFIYTCYEHKYSQRQTAAAAAGGGEERRAAASTAVMRTKLFQYGERGIEGRNA

Query:  DCSICLDEFSEGQVCRMLPKCKHIFHRFCIDQWLPNQPHCPLCRSPV
        DC +C+D F +GQ CR LP+C H+FHR C+D WL     CP+CR  V
Subjt:  DCSICLDEFSEGQVCRMLPKCKHIFHRFCIDQWLPNQPHCPLCRSPV

AT4G33565.1 RING/U-box superfamily protein1.1e-1647.06Show/hide
Query:  TAVMRTKLFQYGERGIEGRNADCSICLDEFSEGQVCRMLPKCKHIFHRFCIDQWLPNQPHCPLCRSPV
        T +   K+ QY ++       DCS+CL EF E +  R+LPKCKH FH +CID WL +  +CPLCR+P+
Subjt:  TAVMRTKLFQYGERGIEGRNADCSICLDEFSEGQVCRMLPKCKHIFHRFCIDQWLPNQPHCPLCRSPV

AT5G10380.1 RING/U-box superfamily protein1.5e-1635.58Show/hide
Query:  PPPPPPALPSSILSSLDLDFLNIAGMSSLALMIVYFIYTCYEHKYSQRQTAAAAAGGGE-----------------------------ERRAAASTAVMR
        PPPPPP  P   LS L    + + G   L L +V+F+Y    H   QR+ +AA+   G+                              R A  S  V+ 
Subjt:  PPPPPPALPSSILSSLDLDFLNIAGMSSLALMIVYFIYTCYEHKYSQRQTAAAAAGGGE-----------------------------ERRAAASTAVMR

Query:  TKLFQYGERGIEGRNADCSICLDEFSEGQVCRMLPKCKHIFHRFCIDQWLPNQPHCPLCRSPV
           F+ GE  I+G   +CS+CL+EF E +  R+LPKC H FH  CID WL +  +CPLCR+PV
Subjt:  TKLFQYGERGIEGRNADCSICLDEFSEGQVCRMLPKCKHIFHRFCIDQWLPNQPHCPLCRSPV

AT5G17600.1 RING/U-box superfamily protein1.2e-1330.56Show/hide
Query:  PPPPPAL-----PSSILSSLDLDFLNIAGMSSLALMIV--YFIYTCYEHKYSQRQTA------------------AAAAGGGEERRAAASTAVMRTKLFQ
        PPPPP+       SS  SS     + + G+ + AL++V  Y + + Y H++ Q  ++                   +  G G       S  V +   ++
Subjt:  PPPPPAL-----PSSILSSLDLDFLNIAGMSSLALMIV--YFIYTCYEHKYSQRQTA------------------AAAAGGGEERRAAASTAVMRTKLFQ

Query:  YGERGIEGRNADCSICLDEFSEGQVCRMLPKCKHIFHRFCIDQWLPNQPHCPLCRSPV------------RVRIVYSNQS
         G+  ++G  +DCS+CL EF E +  R+LPKC H FH  CID WL +  +CPLCR+ V             V +V +NQS
Subjt:  YGERGIEGRNADCSICLDEFSEGQVCRMLPKCKHIFHRFCIDQWLPNQPHCPLCRSPV------------RVRIVYSNQS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
CTCGACCCACCGCCACCGCCGCCCGCCTTACCGTCGAGTATCCTCTCCTCTCTCGATCTCGACTTTCTCAACATCGCGGGAATGTCCTCCCTCGCCCTCATGATCGTCTA
CTTCATCTACACCTGCTACGAGCACAAATACTCGCAACGGCAGACGGCAGCGGCAGCAGCGGGAGGGGGCGAGGAACGACGAGCCGCAGCCTCGACGGCGGTGATGCGCA
CGAAGCTGTTCCAGTACGGGGAGAGGGGCATAGAGGGGAGAAACGCCGATTGCTCGATTTGCTTGGACGAATTCAGTGAAGGGCAGGTTTGCAGAATGTTACCAAAATGT
AAACATATTTTTCACAGATTTTGCATCGATCAGTGGCTTCCTAATCAGCCACATTGCCCTCTCTGTCGCTCTCCTGTTCGTGTTCGTATCGTTTATTCAAACCAATCT
mRNA sequenceShow/hide mRNA sequence
CTCGACCCACCGCCACCGCCGCCCGCCTTACCGTCGAGTATCCTCTCCTCTCTCGATCTCGACTTTCTCAACATCGCGGGAATGTCCTCCCTCGCCCTCATGATCGTCTA
CTTCATCTACACCTGCTACGAGCACAAATACTCGCAACGGCAGACGGCAGCGGCAGCAGCGGGAGGGGGCGAGGAACGACGAGCCGCAGCCTCGACGGCGGTGATGCGCA
CGAAGCTGTTCCAGTACGGGGAGAGGGGCATAGAGGGGAGAAACGCCGATTGCTCGATTTGCTTGGACGAATTCAGTGAAGGGCAGGTTTGCAGAATGTTACCAAAATGT
AAACATATTTTTCACAGATTTTGCATCGATCAGTGGCTTCCTAATCAGCCACATTGCCCTCTCTGTCGCTCTCCTGTTCGTGTTCGTATCGTTTATTCAAACCAATCT
Protein sequenceShow/hide protein sequence
LDPPPPPPALPSSILSSLDLDFLNIAGMSSLALMIVYFIYTCYEHKYSQRQTAAAAAGGGEERRAAASTAVMRTKLFQYGERGIEGRNADCSICLDEFSEGQVCRMLPKC
KHIFHRFCIDQWLPNQPHCPLCRSPVRVRIVYSNQS