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MS013056 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS013056
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionRING-type E3 ubiquitin transferase
Genome locationscaffold997:134274..134717
RNA-Seq ExpressionMS013056
SyntenyMS013056
Gene Ontology termsGO:0016567 - protein ubiquitination (biological process)
GO:0016021 - integral component of membrane (cellular component)
InterPro domainsIPR001841 - Zinc finger, RING-type
IPR013083 - Zinc finger, RING/FYVE/PHD-type
IPR044675 - E3 ubiquitin-protein ligase RING1-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022155478.1 RING-H2 finger protein ATL1-like [Momordica charantia]3.7e-2546.1Show/hide
Query:  SSSASVPSTS--SFHGVSQTLFGLPQYYEYLGVASMFMVFVICLFAVRWCNRRSHRPEAE-----ALPVKDREQEMVVRVQASDFSFGGGGGDSGSDGDD
        S +AS PS +  S  GV     GL    EY  V ++ +VF++   A      R +  E       A PV++ E   +VR++AS F+ GGG        D 
Subjt:  SSSASVPSTS--SFHGVSQTLFGLPQYYEYLGVASMFMVFVICLFAVRWCNRRSHRPEAE-----ALPVKDREQEMVVRVQASDFSFGGGGGDSGSDGDD

Query:  EECSICLGEFEEGEKCRKMSECGHIFHRDCIDRWLKVERHCPLCRGCVCIVVHG
        EEC ICL EF++GEKC  MS+C H+FHR+CIDRWLK ERHCPLCR CVC+ VHG
Subjt:  EECSICLGEFEEGEKCRKMSECGHIFHRDCIDRWLKVERHCPLCRGCVCIVVHG

XP_022158250.1 E3 ubiquitin-protein ligase RING1-like [Momordica charantia]8.1e-7392.52Show/hide
Query:  MSSSASVPSTSSFHGVSQTLFGLPQYYEYLGVASMFMVFVICLFAVRWCNRRSHRPEAEALPVKDREQEMVVRVQASDFSFGGGGGDSGSDGDDEECSIC
        MSSSASVPSTSSFHGVSQTLFGLPQYYEYLGVASMFMVFVICLFAVRWCNRRSHRPEAEALPVKDREQEMVVRVQASDFSFGGGG       DD+EC+IC
Subjt:  MSSSASVPSTSSFHGVSQTLFGLPQYYEYLGVASMFMVFVICLFAVRWCNRRSHRPEAEALPVKDREQEMVVRVQASDFSFGGGGGDSGSDGDDEECSIC

Query:  LGEFEEGEKCRKMSECGHIFHRDCIDRWLKVERHCPLCRGCVCIVVH
        LGEFEEGEKCRKMSECGHIFHR+CIDRWL+VERHCPLCRGCVCIVVH
Subjt:  LGEFEEGEKCRKMSECGHIFHRDCIDRWLKVERHCPLCRGCVCIVVH

XP_022158251.1 RING-H2 finger protein ATL1-like [Momordica charantia]2.7e-2847.89Show/hide
Query:  PSTSSFHGVSQTLFG-LPQYYEYLGVASMFMVFVICLFAVRWCNRRSHRPEAEALPVKDREQEMVVRVQASDFSFGGGGGDSGSDGDDEECSICLGEFEE
        P     + VS +LFG LP++ + L V +MF++ ++ +F +R    RS       LP  +   +  ++++A  F++GG G       DDEEC+ICL +FE+
Subjt:  PSTSSFHGVSQTLFG-LPQYYEYLGVASMFMVFVICLFAVRWCNRRSHRPEAEALPVKDREQEMVVRVQASDFSFGGGGGDSGSDGDDEECSICLGEFEE

Query:  GEKCRKMSECGHIFHRDCIDRWLKVERHCPLCRGCVCIVVHG
        GEKCRKMS+C H+FHRDCIDRWLK ERHCPLCR  +CIVVHG
Subjt:  GEKCRKMSECGHIFHRDCIDRWLKVERHCPLCRGCVCIVVHG

XP_022998666.1 RING-H2 finger protein ATL56-like [Cucurbita maxima]3.1e-2465.56Show/hide
Query:  AEALPVKDREQEMVVRVQASDFSFGGGGGDSGSDGDDEECSICLGEFEEGEKCRKMSECGHIFHRDCIDRWLKVERHCPLCRGCVCIVVH
        A ALPV  RE E +VR++AS FS+    G     G D+EC+ICL EFE+G+KCRKM++CGHIFHR CIDRWLKV+RHCPLCR CVC+VVH
Subjt:  AEALPVKDREQEMVVRVQASDFSFGGGGGDSGSDGDDEECSICLGEFEEGEKCRKMSECGHIFHRDCIDRWLKVERHCPLCRGCVCIVVH

XP_023524567.1 RING-H2 finger protein ATL56-like [Cucurbita pepo subsp. pepo]1.5e-2344.97Show/hide
Query:  VPSTSSFHGVSQTLFGLPQYYEYLGVASMFMVFVICLFAVRW--------CNRRSHRPEAEALPVKDREQEMVVRVQASDFSFGGGGGDSGSDGDDEECS
        +PS  SF      +  + + Y      +   V  IC   + +            S    A ALPV  RE E +VR++AS FS+    G     G D+EC+
Subjt:  VPSTSSFHGVSQTLFGLPQYYEYLGVASMFMVFVICLFAVRW--------CNRRSHRPEAEALPVKDREQEMVVRVQASDFSFGGGGGDSGSDGDDEECS

Query:  ICLGEFEEGEKCRKMSECGHIFHRDCIDRWLKVERHCPLCRGCVCIVVH
        ICL EFE+ +KCRKM++CGHIFHR CIDRWLKV+RHCPLCR CVC+VVH
Subjt:  ICLGEFEEGEKCRKMSECGHIFHRDCIDRWLKVERHCPLCRGCVCIVVH

TrEMBL top hitse value%identityAlignment
A0A0A0LY10 RING-type E3 ubiquitin transferase7.5e-2446.09Show/hide
Query:  TLFGLPQYYEYLGVASMFMVFVICLFAVRWCNRRSHRPEAEALPVKDREQEMVVRVQASDFSFGGGGGDSGSDGDDEECSICLGEFEEGEKCRKMSECGH
        +L  LP+Y E L +ASMF+  V+ LF    C +RS + + E  P         V ++A  F +G      G +G +++C+ICL E EEGEKCRKM  CGH
Subjt:  TLFGLPQYYEYLGVASMFMVFVICLFAVRWCNRRSHRPEAEALPVKDREQEMVVRVQASDFSFGGGGGDSGSDGDDEECSICLGEFEEGEKCRKMSECGH

Query:  IFHRDCIDRWLKVERHCPLCRGCVCIVV
        +FH+DCI RW KV+ HCP+CR  VC+VV
Subjt:  IFHRDCIDRWLKVERHCPLCRGCVCIVV

A0A6J1DN25 RING-H2 finger protein ATL1-like1.8e-2546.1Show/hide
Query:  SSSASVPSTS--SFHGVSQTLFGLPQYYEYLGVASMFMVFVICLFAVRWCNRRSHRPEAE-----ALPVKDREQEMVVRVQASDFSFGGGGGDSGSDGDD
        S +AS PS +  S  GV     GL    EY  V ++ +VF++   A      R +  E       A PV++ E   +VR++AS F+ GGG        D 
Subjt:  SSSASVPSTS--SFHGVSQTLFGLPQYYEYLGVASMFMVFVICLFAVRWCNRRSHRPEAE-----ALPVKDREQEMVVRVQASDFSFGGGGGDSGSDGDD

Query:  EECSICLGEFEEGEKCRKMSECGHIFHRDCIDRWLKVERHCPLCRGCVCIVVHG
        EEC ICL EF++GEKC  MS+C H+FHR+CIDRWLK ERHCPLCR CVC+ VHG
Subjt:  EECSICLGEFEEGEKCRKMSECGHIFHRDCIDRWLKVERHCPLCRGCVCIVVHG

A0A6J1DVB5 RING-type E3 ubiquitin transferase3.9e-7392.52Show/hide
Query:  MSSSASVPSTSSFHGVSQTLFGLPQYYEYLGVASMFMVFVICLFAVRWCNRRSHRPEAEALPVKDREQEMVVRVQASDFSFGGGGGDSGSDGDDEECSIC
        MSSSASVPSTSSFHGVSQTLFGLPQYYEYLGVASMFMVFVICLFAVRWCNRRSHRPEAEALPVKDREQEMVVRVQASDFSFGGGG       DD+EC+IC
Subjt:  MSSSASVPSTSSFHGVSQTLFGLPQYYEYLGVASMFMVFVICLFAVRWCNRRSHRPEAEALPVKDREQEMVVRVQASDFSFGGGGGDSGSDGDDEECSIC

Query:  LGEFEEGEKCRKMSECGHIFHRDCIDRWLKVERHCPLCRGCVCIVVH
        LGEFEEGEKCRKMSECGHIFHR+CIDRWL+VERHCPLCRGCVCIVVH
Subjt:  LGEFEEGEKCRKMSECGHIFHRDCIDRWLKVERHCPLCRGCVCIVVH

A0A6J1E0E9 RING-H2 finger protein ATL1-like1.3e-2847.89Show/hide
Query:  PSTSSFHGVSQTLFG-LPQYYEYLGVASMFMVFVICLFAVRWCNRRSHRPEAEALPVKDREQEMVVRVQASDFSFGGGGGDSGSDGDDEECSICLGEFEE
        P     + VS +LFG LP++ + L V +MF++ ++ +F +R    RS       LP  +   +  ++++A  F++GG G       DDEEC+ICL +FE+
Subjt:  PSTSSFHGVSQTLFG-LPQYYEYLGVASMFMVFVICLFAVRWCNRRSHRPEAEALPVKDREQEMVVRVQASDFSFGGGGGDSGSDGDDEECSICLGEFEE

Query:  GEKCRKMSECGHIFHRDCIDRWLKVERHCPLCRGCVCIVVHG
        GEKCRKMS+C H+FHRDCIDRWLK ERHCPLCR  +CIVVHG
Subjt:  GEKCRKMSECGHIFHRDCIDRWLKVERHCPLCRGCVCIVVHG

A0A6J1KAT3 RING-type E3 ubiquitin transferase1.5e-2465.56Show/hide
Query:  AEALPVKDREQEMVVRVQASDFSFGGGGGDSGSDGDDEECSICLGEFEEGEKCRKMSECGHIFHRDCIDRWLKVERHCPLCRGCVCIVVH
        A ALPV  RE E +VR++AS FS+    G     G D+EC+ICL EFE+G+KCRKM++CGHIFHR CIDRWLKV+RHCPLCR CVC+VVH
Subjt:  AEALPVKDREQEMVVRVQASDFSFGGGGGDSGSDGDDEECSICLGEFEEGEKCRKMSECGHIFHRDCIDRWLKVERHCPLCRGCVCIVVH

SwissProt top hitse value%identityAlignment
Q7XLY8 E3 ubiquitin-protein ligase Os04g05909001.8e-1150.94Show/hide
Query:  ECSICLGEFEEGEKCRKMSECGHIFHRDCIDRWLKVERHCPLCRGCVCIVVHG
        +CS+CLGEF +GE  R +  C H FH+ CID WLK   +CPLCR  +  V  G
Subjt:  ECSICLGEFEEGEKCRKMSECGHIFHRDCIDRWLKVERHCPLCRGCVCIVVHG

Q9LF64 RING-H2 finger protein ATL529.1e-1154.39Show/hide
Query:  GDSGSDGDDEECSICLGEFEEGEKCRKMSECGHIFHRDCIDRWLKVERHCPLCRGCV
        GD   DG D  CS+CL EFEE E  R + +C H FH  CID WLK   +CPLCR  V
Subjt:  GDSGSDGDDEECSICLGEFEEGEKCRKMSECGHIFHRDCIDRWLKVERHCPLCRGCV

Q9LX93 E3 ubiquitin-protein ligase RING19.1e-1150.94Show/hide
Query:  DDEECSICLGEFEEGEKCRKMSECGHIFHRDCIDRWLKVERHCPLCRGCVCIV
        D  ECS+CL EFEE E  R + +C H FH +CID WL   ++CPLCR  V ++
Subjt:  DDEECSICLGEFEEGEKCRKMSECGHIFHRDCIDRWLKVERHCPLCRGCVCIV

Q9LZJ6 RING-H2 finger protein ATL53.1e-1156.25Show/hide
Query:  EECSICLGEFEEGEKCRKMSECGHIFHRDCIDRWLKVERHCPLCRGCV
        EECS+CL EFEE ++ R + +CGH+FH DCID W +    CPLCR  V
Subjt:  EECSICLGEFEEGEKCRKMSECGHIFHRDCIDRWLKVERHCPLCRGCV

Q9SRM0 RING-H2 finger protein ATL661.4e-1150.94Show/hide
Query:  DSGSDGDDEECSICLGEFEEGEKCRKMSECGHIFHRDCIDRWLKVERHCPLCR
        +   + +++EC ICLG FEEGEK + +  C H +H +C+DRWLK E  CPLCR
Subjt:  DSGSDGDDEECSICLGEFEEGEKCRKMSECGHIFHRDCIDRWLKVERHCPLCR

Arabidopsis top hitse value%identityAlignment
AT3G11110.1 RING/U-box superfamily protein1.0e-1250.94Show/hide
Query:  DSGSDGDDEECSICLGEFEEGEKCRKMSECGHIFHRDCIDRWLKVERHCPLCR
        +   + +++EC ICLG FEEGEK + +  C H +H +C+DRWLK E  CPLCR
Subjt:  DSGSDGDDEECSICLGEFEEGEKCRKMSECGHIFHRDCIDRWLKVERHCPLCR

AT3G62690.1 AtL52.2e-1256.25Show/hide
Query:  EECSICLGEFEEGEKCRKMSECGHIFHRDCIDRWLKVERHCPLCRGCV
        EECS+CL EFEE ++ R + +CGH+FH DCID W +    CPLCR  V
Subjt:  EECSICLGEFEEGEKCRKMSECGHIFHRDCIDRWLKVERHCPLCRGCV

AT4G17905.1 RING/U-box superfamily protein8.5e-1255.1Show/hide
Query:  ECSICLGEFEEGEKCRKMSECGHIFHRDCIDRWLKVERHCPLCRGCVCI
        +CSICLGEF E E  R + +C H FH  CIDRWLK   +CPLCR  + +
Subjt:  ECSICLGEFEEGEKCRKMSECGHIFHRDCIDRWLKVERHCPLCRGCVCI

AT5G10380.1 RING/U-box superfamily protein6.5e-1250.94Show/hide
Query:  DDEECSICLGEFEEGEKCRKMSECGHIFHRDCIDRWLKVERHCPLCRGCVCIV
        D  ECS+CL EFEE E  R + +C H FH +CID WL   ++CPLCR  V ++
Subjt:  DDEECSICLGEFEEGEKCRKMSECGHIFHRDCIDRWLKVERHCPLCRGCVCIV

AT5G17600.1 RING/U-box superfamily protein6.5e-1254.39Show/hide
Query:  GDSGSDGDDEECSICLGEFEEGEKCRKMSECGHIFHRDCIDRWLKVERHCPLCRGCV
        GD   DG D  CS+CL EFEE E  R + +C H FH  CID WLK   +CPLCR  V
Subjt:  GDSGSDGDDEECSICLGEFEEGEKCRKMSECGHIFHRDCIDRWLKVERHCPLCRGCV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCGTCATCAGCTTCAGTTCCTTCAACGTCGTCGTTTCACGGCGTCTCCCAAACCCTCTTTGGGCTGCCTCAATATTATGAGTATTTGGGTGTGGCTTCCATGTTCAT
GGTGTTTGTAATATGTTTATTTGCTGTGAGATGGTGCAACAGAAGAAGCCACCGCCCCGAAGCCGAAGCTTTGCCGGTGAAAGATCGAGAGCAGGAGATGGTGGTCCGGG
TTCAAGCCTCGGATTTCAGTTTCGGCGGAGGCGGCGGTGACAGTGGCAGTGACGGTGACGACGAAGAATGTTCGATTTGCCTGGGGGAATTTGAAGAAGGGGAGAAGTGC
CGGAAGATGAGTGAGTGCGGCCACATATTTCACCGGGACTGCATTGACCGGTGGCTGAAGGTGGAGCGCCACTGCCCGCTTTGCCGGGGTTGCGTTTGCATCGTCGTCCA
TGGC
mRNA sequenceShow/hide mRNA sequence
ATGTCGTCATCAGCTTCAGTTCCTTCAACGTCGTCGTTTCACGGCGTCTCCCAAACCCTCTTTGGGCTGCCTCAATATTATGAGTATTTGGGTGTGGCTTCCATGTTCAT
GGTGTTTGTAATATGTTTATTTGCTGTGAGATGGTGCAACAGAAGAAGCCACCGCCCCGAAGCCGAAGCTTTGCCGGTGAAAGATCGAGAGCAGGAGATGGTGGTCCGGG
TTCAAGCCTCGGATTTCAGTTTCGGCGGAGGCGGCGGTGACAGTGGCAGTGACGGTGACGACGAAGAATGTTCGATTTGCCTGGGGGAATTTGAAGAAGGGGAGAAGTGC
CGGAAGATGAGTGAGTGCGGCCACATATTTCACCGGGACTGCATTGACCGGTGGCTGAAGGTGGAGCGCCACTGCCCGCTTTGCCGGGGTTGCGTTTGCATCGTCGTCCA
TGGC
Protein sequenceShow/hide protein sequence
MSSSASVPSTSSFHGVSQTLFGLPQYYEYLGVASMFMVFVICLFAVRWCNRRSHRPEAEALPVKDREQEMVVRVQASDFSFGGGGGDSGSDGDDEECSICLGEFEEGEKC
RKMSECGHIFHRDCIDRWLKVERHCPLCRGCVCIVVHG