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MS013057 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS013057
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionRING-H2 finger protein ATL1-like
Genome locationscaffold997:137921..138064
RNA-Seq ExpressionMS013057
SyntenyMS013057
Gene Ontology termsGO:0016567 - protein ubiquitination (biological process)
GO:0016021 - integral component of membrane (cellular component)
InterPro domainsIPR001841 - Zinc finger, RING-type
IPR013083 - Zinc finger, RING/FYVE/PHD-type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022155478.1 RING-H2 finger protein ATL1-like [Momordica charantia]7.2e-1575Show/hide
Query:  EECAICLSKFEQGEKCRKMSKCDHVFHRDCIDRWLKAERHCPLCRTSI
        EEC ICL++F++GEKC  MSKC HVFHR+CIDRWLKAERHCPLCR+ +
Subjt:  EECAICLSKFEQGEKCRKMSKCDHVFHRDCIDRWLKAERHCPLCRTSI
XP_022158250.1 E3 ubiquitin-protein ligase RING1-like [Momordica charantia]1.1e-1577.78Show/hide
Query:  EECAICLSKFEQGEKCRKMSKCDHVFHRDCIDRWLKAERHCPLCR
        +ECAICL +FE+GEKCRKMS+C H+FHR+CIDRWL+ ERHCPLCR
Subjt:  EECAICLSKFEQGEKCRKMSKCDHVFHRDCIDRWLKAERHCPLCR
XP_022158251.1 RING-H2 finger protein ATL1-like [Momordica charantia]1.0e-21100Show/hide
Query:  EECAICLSKFEQGEKCRKMSKCDHVFHRDCIDRWLKAERHCPLCRTSI
        EECAICLSKFEQGEKCRKMSKCDHVFHRDCIDRWLKAERHCPLCRTSI
Subjt:  EECAICLSKFEQGEKCRKMSKCDHVFHRDCIDRWLKAERHCPLCRTSI
XP_022998666.1 RING-H2 finger protein ATL56-like [Cucurbita maxima]2.5e-1570.83Show/hide
Query:  EECAICLSKFEQGEKCRKMSKCDHVFHRDCIDRWLKAERHCPLCRTSI
        +ECAICL +FE G+KCRKM+KC H+FHR CIDRWLK +RHCPLCR+ +
Subjt:  EECAICLSKFEQGEKCRKMSKCDHVFHRDCIDRWLKAERHCPLCRTSI
XP_023524567.1 RING-H2 finger protein ATL56-like [Cucurbita pepo subsp. pepo]1.2e-1468.75Show/hide
Query:  EECAICLSKFEQGEKCRKMSKCDHVFHRDCIDRWLKAERHCPLCRTSI
        +ECAICL +FE  +KCRKM+KC H+FHR CIDRWLK +RHCPLCR+ +
Subjt:  EECAICLSKFEQGEKCRKMSKCDHVFHRDCIDRWLKAERHCPLCRTSI
TrEMBL top hitse value%identityAlignment
A0A5A7U2S7 RING-type E3 ubiquitin transferase7.8e-1572.92Show/hide
Query:  EECAICLSKFEQGEKCRKMSKCDHVFHRDCIDRWLKAERHCPLCRTSI
        +ECAICL + E+GEKCRKM  C HVFH+DCIDRW   E HCPLCRTSI
Subjt:  EECAICLSKFEQGEKCRKMSKCDHVFHRDCIDRWLKAERHCPLCRTSI
A0A6J1DN25 RING-H2 finger protein ATL1-like3.5e-1575Show/hide
Query:  EECAICLSKFEQGEKCRKMSKCDHVFHRDCIDRWLKAERHCPLCRTSI
        EEC ICL++F++GEKC  MSKC HVFHR+CIDRWLKAERHCPLCR+ +
Subjt:  EECAICLSKFEQGEKCRKMSKCDHVFHRDCIDRWLKAERHCPLCRTSI
A0A6J1DVB5 RING-type E3 ubiquitin transferase5.4e-1677.78Show/hide
Query:  EECAICLSKFEQGEKCRKMSKCDHVFHRDCIDRWLKAERHCPLCR
        +ECAICL +FE+GEKCRKMS+C H+FHR+CIDRWL+ ERHCPLCR
Subjt:  EECAICLSKFEQGEKCRKMSKCDHVFHRDCIDRWLKAERHCPLCR
A0A6J1E0E9 RING-H2 finger protein ATL1-like5.0e-22100Show/hide
Query:  EECAICLSKFEQGEKCRKMSKCDHVFHRDCIDRWLKAERHCPLCRTSI
        EECAICLSKFEQGEKCRKMSKCDHVFHRDCIDRWLKAERHCPLCRTSI
Subjt:  EECAICLSKFEQGEKCRKMSKCDHVFHRDCIDRWLKAERHCPLCRTSI
A0A6J1KAT3 RING-type E3 ubiquitin transferase1.2e-1570.83Show/hide
Query:  EECAICLSKFEQGEKCRKMSKCDHVFHRDCIDRWLKAERHCPLCRTSI
        +ECAICL +FE G+KCRKM+KC H+FHR CIDRWLK +RHCPLCR+ +
Subjt:  EECAICLSKFEQGEKCRKMSKCDHVFHRDCIDRWLKAERHCPLCRTSI
SwissProt top hitse value%identityAlignment
P93823 RING-H2 finger protein ATL11.0e-1154.17Show/hide
Query:  EECAICLSKFEQGEKCRKMSKCDHVFHRDCIDRWLKAERHCPLCRTSI
        +EC++CL++F++ EK R +  C HVFH DCID WL+   +CPLCRTS+
Subjt:  EECAICLSKFEQGEKCRKMSKCDHVFHRDCIDRWLKAERHCPLCRTSI
Q8RXX9 E3 ubiquitin-protein ligase ATL63.0e-1157.45Show/hide
Query:  ECAICLSKFEQGEKCRKMSKCDHVFHRDCIDRWLKAERHCPLCRTSI
        ECAICL++FE  E  R + KCDHVFH  CID WL+A   CP+CR ++
Subjt:  ECAICLSKFEQGEKCRKMSKCDHVFHRDCIDRWLKAERHCPLCRTSI
Q9FGJ6 RING-H2 finger protein ATL792.3e-1159.57Show/hide
Query:  ECAICLSKFEQGEKCRKMSKCDHVFHRDCIDRWLKAERHCPLCRTSI
        ECAICLS+FEQGE  + + KC H FH  CI +WL     CP CRTSI
Subjt:  ECAICLSKFEQGEKCRKMSKCDHVFHRDCIDRWLKAERHCPLCRTSI
Q9LZJ6 RING-H2 finger protein ATL52.3e-1152.08Show/hide
Query:  EECAICLSKFEQGEKCRKMSKCDHVFHRDCIDRWLKAERHCPLCRTSI
        EEC++CLS+FE+ ++ R + KC HVFH DCID W ++   CPLCR  +
Subjt:  EECAICLSKFEQGEKCRKMSKCDHVFHRDCIDRWLKAERHCPLCRTSI
Q9SRM0 RING-H2 finger protein ATL663.5e-1256.25Show/hide
Query:  EECAICLSKFEQGEKCRKMSKCDHVFHRDCIDRWLKAERHCPLCRTSI
        +EC ICL  FE+GEK + +  C H +H +C+DRWLK E  CPLCR SI
Subjt:  EECAICLSKFEQGEKCRKMSKCDHVFHRDCIDRWLKAERHCPLCRTSI
Arabidopsis top hitse value%identityAlignment
AT1G04360.1 RING/U-box superfamily protein7.2e-1354.17Show/hide
Query:  EECAICLSKFEQGEKCRKMSKCDHVFHRDCIDRWLKAERHCPLCRTSI
        +EC++CL++F++ EK R +  C HVFH DCID WL+   +CPLCRTS+
Subjt:  EECAICLSKFEQGEKCRKMSKCDHVFHRDCIDRWLKAERHCPLCRTSI
AT3G05200.1 RING/U-box superfamily protein2.1e-1257.45Show/hide
Query:  ECAICLSKFEQGEKCRKMSKCDHVFHRDCIDRWLKAERHCPLCRTSI
        ECAICL++FE  E  R + KCDHVFH  CID WL+A   CP+CR ++
Subjt:  ECAICLSKFEQGEKCRKMSKCDHVFHRDCIDRWLKAERHCPLCRTSI
AT3G11110.1 RING/U-box superfamily protein2.5e-1356.25Show/hide
Query:  EECAICLSKFEQGEKCRKMSKCDHVFHRDCIDRWLKAERHCPLCRTSI
        +EC ICL  FE+GEK + +  C H +H +C+DRWLK E  CPLCR SI
Subjt:  EECAICLSKFEQGEKCRKMSKCDHVFHRDCIDRWLKAERHCPLCRTSI
AT3G62690.1 AtL51.6e-1252.08Show/hide
Query:  EECAICLSKFEQGEKCRKMSKCDHVFHRDCIDRWLKAERHCPLCRTSI
        EEC++CLS+FE+ ++ R + KC HVFH DCID W ++   CPLCR  +
Subjt:  EECAICLSKFEQGEKCRKMSKCDHVFHRDCIDRWLKAERHCPLCRTSI
AT5G47610.1 RING/U-box superfamily protein1.6e-1259.57Show/hide
Query:  ECAICLSKFEQGEKCRKMSKCDHVFHRDCIDRWLKAERHCPLCRTSI
        ECAICLS+FEQGE  + + KC H FH  CI +WL     CP CRTSI
Subjt:  ECAICLSKFEQGEKCRKMSKCDHVFHRDCIDRWLKAERHCPLCRTSI

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
GAAGAATGTGCAATTTGCCTTAGCAAATTTGAACAAGGAGAGAAGTGCCGCAAAATGAGTAAGTGCGACCACGTGTTTCACCGGGACTGTATTGACCGGTGGCTGAAGGC
GGAGCGCCACTGCCCGCTTTGCCGGACCAGTATT
mRNA sequenceShow/hide mRNA sequence
GAAGAATGTGCAATTTGCCTTAGCAAATTTGAACAAGGAGAGAAGTGCCGCAAAATGAGTAAGTGCGACCACGTGTTTCACCGGGACTGTATTGACCGGTGGCTGAAGGC
GGAGCGCCACTGCCCGCTTTGCCGGACCAGTATT
Protein sequenceShow/hide protein sequence
EECAICLSKFEQGEKCRKMSKCDHVFHRDCIDRWLKAERHCPLCRTSI