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MS013058 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS013058
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionRING-type E3 ubiquitin transferase
Genome locationscaffold997:140080..140223
RNA-Seq ExpressionMS013058
SyntenyMS013058
Gene Ontology termsGO:0016567 - protein ubiquitination (biological process)
GO:0016021 - integral component of membrane (cellular component)
InterPro domainsIPR001841 - Zinc finger, RING-type
IPR013083 - Zinc finger, RING/FYVE/PHD-type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022155478.1 RING-H2 finger protein ATL1-like [Momordica charantia]2.4e-1063.04Show/hide
Query:  CVICLCGYEEGEK-WLKMKCGHIFHRSCIERWLMVGRHCPLCRSCL
        CVICL  +++GEK W+  KC H+FHR+CI+RWL   RHCPLCRSC+
Subjt:  CVICLCGYEEGEK-WLKMKCGHIFHRSCIERWLMVGRHCPLCRSCL

XP_022158250.1 E3 ubiquitin-protein ligase RING1-like [Momordica charantia]6.3e-1167.35Show/hide
Query:  CVICLCGYEEGEKWLKM-KCGHIFHRSCIERWLMVGRHCPLCRSCLSAV
        C ICL  +EEGEK  KM +CGHIFHR+CI+RWL V RHCPLCR C+  V
Subjt:  CVICLCGYEEGEKWLKM-KCGHIFHRSCIERWLMVGRHCPLCRSCLSAV

XP_022158252.1 E3 ubiquitin-protein ligase RHA2B-like [Momordica charantia]1.6e-22100Show/hide
Query:  CVICLCGYEEGEKWLKMKCGHIFHRSCIERWLMVGRHCPLCRSCLSAV
        CVICLCGYEEGEKWLKMKCGHIFHRSCIERWLMVGRHCPLCRSCLSAV
Subjt:  CVICLCGYEEGEKWLKMKCGHIFHRSCIERWLMVGRHCPLCRSCLSAV

XP_022998666.1 RING-H2 finger protein ATL56-like [Cucurbita maxima]3.7e-1167.35Show/hide
Query:  CVICLCGYEEGEKWLKM-KCGHIFHRSCIERWLMVGRHCPLCRSCLSAV
        C ICL  +E+G+K  KM KCGHIFHR CI+RWL V RHCPLCRSC+  V
Subjt:  CVICLCGYEEGEKWLKM-KCGHIFHRSCIERWLMVGRHCPLCRSCLSAV

XP_023524567.1 RING-H2 finger protein ATL56-like [Cucurbita pepo subsp. pepo]1.8e-1065.31Show/hide
Query:  CVICLCGYEEGEKWLKM-KCGHIFHRSCIERWLMVGRHCPLCRSCLSAV
        C ICL  +E+ +K  KM KCGHIFHR CI+RWL V RHCPLCRSC+  V
Subjt:  CVICLCGYEEGEKWLKM-KCGHIFHRSCIERWLMVGRHCPLCRSCLSAV

TrEMBL top hitse value%identityAlignment
A0A0A0LUU6 RING-type E3 ubiquitin transferase3.4e-1061.22Show/hide
Query:  CVICLCGYEEGEKWLKMK-CGHIFHRSCIERWLMVGRHCPLCRSCLSAV
        CVICLC  EEGEK  KMK CGH+FH+ CI+RW  V  HCP+CR+ +  V
Subjt:  CVICLCGYEEGEKWLKMK-CGHIFHRSCIERWLMVGRHCPLCRSCLSAV

A0A5A7U2S7 RING-type E3 ubiquitin transferase5.8e-1061.22Show/hide
Query:  CVICLCGYEEGEKWLKMK-CGHIFHRSCIERWLMVGRHCPLCRSCLSAV
        C ICLC  EEGEK  KMK CGH+FH+ CI+RW  V  HCPLCR+ +  V
Subjt:  CVICLCGYEEGEKWLKMK-CGHIFHRSCIERWLMVGRHCPLCRSCLSAV

A0A6J1DVB5 RING-type E3 ubiquitin transferase3.1e-1167.35Show/hide
Query:  CVICLCGYEEGEKWLKM-KCGHIFHRSCIERWLMVGRHCPLCRSCLSAV
        C ICL  +EEGEK  KM +CGHIFHR+CI+RWL V RHCPLCR C+  V
Subjt:  CVICLCGYEEGEKWLKM-KCGHIFHRSCIERWLMVGRHCPLCRSCLSAV

A0A6J1DWR6 E3 ubiquitin-protein ligase RHA2B-like7.8e-23100Show/hide
Query:  CVICLCGYEEGEKWLKMKCGHIFHRSCIERWLMVGRHCPLCRSCLSAV
        CVICLCGYEEGEKWLKMKCGHIFHRSCIERWLMVGRHCPLCRSCLSAV
Subjt:  CVICLCGYEEGEKWLKMKCGHIFHRSCIERWLMVGRHCPLCRSCLSAV

A0A6J1KAT3 RING-type E3 ubiquitin transferase1.8e-1167.35Show/hide
Query:  CVICLCGYEEGEKWLKM-KCGHIFHRSCIERWLMVGRHCPLCRSCLSAV
        C ICL  +E+G+K  KM KCGHIFHR CI+RWL V RHCPLCRSC+  V
Subjt:  CVICLCGYEEGEKWLKM-KCGHIFHRSCIERWLMVGRHCPLCRSCLSAV

SwissProt top hitse value%identityAlignment
O00237 E3 ubiquitin-protein ligase RNF1031.5e-0751.16Show/hide
Query:  CVICLCGYEEGEKWLKMKCGHIFHRSCIERWLMVGRH-CPLCR
        CV+CL  +E G   + + CGH+FH++CI  WL  GRH CP+CR
Subjt:  CVICLCGYEEGEKWLKMKCGHIFHRSCIERWLMVGRH-CPLCR

Q93Z92 E3 ubiquitin-protein ligase At4g116804.0e-0847.62Show/hide
Query:  CVICLCGYEEGEKWLKMKCGHIFHRSCIERWLMVGRHCPLCR
        C ICLC YE+G +  ++ C H FH +CI++WL +   CPLC+
Subjt:  CVICLCGYEEGEKWLKMKCGHIFHRSCIERWLMVGRHCPLCR

Q9EPZ8 E3 ubiquitin-protein ligase RNF1031.5e-0751.16Show/hide
Query:  CVICLCGYEEGEKWLKMKCGHIFHRSCIERWLMVGRH-CPLCR
        CV+CL  +E G   + + CGH+FH++CI  WL  GRH CP+CR
Subjt:  CVICLCGYEEGEKWLKMKCGHIFHRSCIERWLMVGRH-CPLCR

Q9LN71 E3 ubiquitin-protein ligase At1g127604.0e-0847.62Show/hide
Query:  CVICLCGYEEGEKWLKMKCGHIFHRSCIERWLMVGRHCPLCR
        C ICL  YE+G +  ++ CGH FH SC+++WL +   CPLC+
Subjt:  CVICLCGYEEGEKWLKMKCGHIFHRSCIERWLMVGRHCPLCR

Q9R1W3 E3 ubiquitin-protein ligase RNF1031.5e-0751.16Show/hide
Query:  CVICLCGYEEGEKWLKMKCGHIFHRSCIERWLMVGRH-CPLCR
        CV+CL  +E G   + + CGH+FH++CI  WL  GRH CP+CR
Subjt:  CVICLCGYEEGEKWLKMKCGHIFHRSCIERWLMVGRH-CPLCR

Arabidopsis top hitse value%identityAlignment
AT1G12760.1 Zinc finger, C3HC4 type (RING finger) family protein2.8e-0947.62Show/hide
Query:  CVICLCGYEEGEKWLKMKCGHIFHRSCIERWLMVGRHCPLCR
        C ICL  YE+G +  ++ CGH FH SC+++WL +   CPLC+
Subjt:  CVICLCGYEEGEKWLKMKCGHIFHRSCIERWLMVGRHCPLCR

AT1G12760.2 Zinc finger, C3HC4 type (RING finger) family protein2.8e-0947.62Show/hide
Query:  CVICLCGYEEGEKWLKMKCGHIFHRSCIERWLMVGRHCPLCR
        C ICL  YE+G +  ++ CGH FH SC+++WL +   CPLC+
Subjt:  CVICLCGYEEGEKWLKMKCGHIFHRSCIERWLMVGRHCPLCR

AT3G61180.1 RING/U-box superfamily protein8.3e-0945.24Show/hide
Query:  CVICLCGYEEGEKWLKMKCGHIFHRSCIERWLMVGRHCPLCR
        C ICLC YE+G +  ++ C H FH  C+++WL +   CPLC+
Subjt:  CVICLCGYEEGEKWLKMKCGHIFHRSCIERWLMVGRHCPLCR

AT4G11680.1 Zinc finger, C3HC4 type (RING finger) family protein2.8e-0947.62Show/hide
Query:  CVICLCGYEEGEKWLKMKCGHIFHRSCIERWLMVGRHCPLCR
        C ICLC YE+G +  ++ C H FH +CI++WL +   CPLC+
Subjt:  CVICLCGYEEGEKWLKMKCGHIFHRSCIERWLMVGRHCPLCR

AT4G32600.1 RING/U-box superfamily protein1.1e-0841.86Show/hide
Query:  CVICLCGYEEGEKWLKMKCGHIFHRSCIERWLMVGRHCPLCRS
        C ICL  Y   E+  ++ C H FH+ C+++WL +   CPLC+S
Subjt:  CVICLCGYEEGEKWLKMKCGHIFHRSCIERWLMVGRHCPLCRS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
TGTGTGATTTGCCTGTGCGGATATGAAGAAGGGGAGAAGTGGCTGAAGATGAAGTGCGGCCATATATTTCACCGGAGCTGTATTGAGCGGTGGCTGATGGTGGGCCGCCA
CTGCCCGCTTTGCCGGAGCTGCCTTTCCGCCGTC
mRNA sequenceShow/hide mRNA sequence
TGTGTGATTTGCCTGTGCGGATATGAAGAAGGGGAGAAGTGGCTGAAGATGAAGTGCGGCCATATATTTCACCGGAGCTGTATTGAGCGGTGGCTGATGGTGGGCCGCCA
CTGCCCGCTTTGCCGGAGCTGCCTTTCCGCCGTC
Protein sequenceShow/hide protein sequence
CVICLCGYEEGEKWLKMKCGHIFHRSCIERWLMVGRHCPLCRSCLSAV