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MS013059 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS013059
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionRING-type E3 ubiquitin transferase
Genome locationscaffold997:150297..150500
RNA-Seq ExpressionMS013059
SyntenyMS013059
Gene Ontology termsGO:0016020 - membrane (cellular component)
InterPro domainsIPR001841 - Zinc finger, RING-type
IPR013083 - Zinc finger, RING/FYVE/PHD-type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022155478.1 RING-H2 finger protein ATL1-like [Momordica charantia]6.2e-1257.38Show/hide
Query:  GEECAICLCVYEEGERKWVKMSKCGHIFHRRCIKGWLKVGRRCPLCRSSVSVFVRCGNTAL
        GEEC ICL  +++GE+ W+ MSKC H+FHR CI  WLK  R CPLCRS V V V  GN  +
Subjt:  GEECAICLCVYEEGERKWVKMSKCGHIFHRRCIKGWLKVGRRCPLCRSSVSVFVRCGNTAL

XP_022158250.1 E3 ubiquitin-protein ligase RING1-like [Momordica charantia]4.8e-1260.66Show/hide
Query:  EECAICLCVYEEGERKWVKMSKCGHIFHRRCIKGWLKVGRRCPLCRSSVSVFVRCGNTALP
        +ECAICL  +EEGE K  KMS+CGHIFHR CI  WL+V R CPLCR  V + V   NT +P
Subjt:  EECAICLCVYEEGERKWVKMSKCGHIFHRRCIKGWLKVGRRCPLCRSSVSVFVRCGNTALP

XP_022158251.1 RING-H2 finger protein ATL1-like [Momordica charantia]9.6e-1358.73Show/hide
Query:  EECAICLCVYEEGERKWVKMSKCGHIFHRRCIKGWLKVGRRCPLCRSSVSVFVRCGNTALPPA
        EECAICL  +E+GE K  KMSKC H+FHR CI  WLK  R CPLCR+S+ + V  G+  +PPA
Subjt:  EECAICLCVYEEGERKWVKMSKCGHIFHRRCIKGWLKVGRRCPLCRSSVSVFVRCGNTALPPA

XP_022158252.1 E3 ubiquitin-protein ligase RHA2B-like [Momordica charantia]9.3e-1668.75Show/hide
Query:  GGEECAICLCVYEEGERKWVKMSKCGHIFHRRCIKGWLKVGRRCPLCRSSVS-VFVRCGNTALP
        GG EC ICLC YEEGE KW+KM KCGHIFHR CI+ WL VGR CPLCRS +S V V CG   +P
Subjt:  GGEECAICLCVYEEGERKWVKMSKCGHIFHRRCIKGWLKVGRRCPLCRSSVS-VFVRCGNTALP

XP_022998666.1 RING-H2 finger protein ATL56-like [Cucurbita maxima]2.4e-1167.92Show/hide
Query:  EECAICLCVYEEGERKWVKMSKCGHIFHRRCIKGWLKVGRRCPLCRSSVSVFV
        +ECAICL  +E+G+ K  KM+KCGHIFHRRCI  WLKV R CPLCRS V V V
Subjt:  EECAICLCVYEEGERKWVKMSKCGHIFHRRCIKGWLKVGRRCPLCRSSVSVFV

TrEMBL top hitse value%identityAlignment
A0A6J1DN25 RING-H2 finger protein ATL1-like3.0e-1257.38Show/hide
Query:  GEECAICLCVYEEGERKWVKMSKCGHIFHRRCIKGWLKVGRRCPLCRSSVSVFVRCGNTAL
        GEEC ICL  +++GE+ W+ MSKC H+FHR CI  WLK  R CPLCRS V V V  GN  +
Subjt:  GEECAICLCVYEEGERKWVKMSKCGHIFHRRCIKGWLKVGRRCPLCRSSVSVFVRCGNTAL

A0A6J1DVB5 RING-type E3 ubiquitin transferase2.3e-1260.66Show/hide
Query:  EECAICLCVYEEGERKWVKMSKCGHIFHRRCIKGWLKVGRRCPLCRSSVSVFVRCGNTALP
        +ECAICL  +EEGE K  KMS+CGHIFHR CI  WL+V R CPLCR  V + V   NT +P
Subjt:  EECAICLCVYEEGERKWVKMSKCGHIFHRRCIKGWLKVGRRCPLCRSSVSVFVRCGNTALP

A0A6J1DWR6 E3 ubiquitin-protein ligase RHA2B-like4.5e-1668.75Show/hide
Query:  GGEECAICLCVYEEGERKWVKMSKCGHIFHRRCIKGWLKVGRRCPLCRSSVS-VFVRCGNTALP
        GG EC ICLC YEEGE KW+KM KCGHIFHR CI+ WL VGR CPLCRS +S V V CG   +P
Subjt:  GGEECAICLCVYEEGERKWVKMSKCGHIFHRRCIKGWLKVGRRCPLCRSSVS-VFVRCGNTALP

A0A6J1E0E9 RING-H2 finger protein ATL1-like4.6e-1358.73Show/hide
Query:  EECAICLCVYEEGERKWVKMSKCGHIFHRRCIKGWLKVGRRCPLCRSSVSVFVRCGNTALPPA
        EECAICL  +E+GE K  KMSKC H+FHR CI  WLK  R CPLCR+S+ + V  G+  +PPA
Subjt:  EECAICLCVYEEGERKWVKMSKCGHIFHRRCIKGWLKVGRRCPLCRSSVSVFVRCGNTALPPA

A0A6J1KAT3 RING-type E3 ubiquitin transferase1.1e-1167.92Show/hide
Query:  EECAICLCVYEEGERKWVKMSKCGHIFHRRCIKGWLKVGRRCPLCRSSVSVFV
        +ECAICL  +E+G+ K  KM+KCGHIFHRRCI  WLKV R CPLCRS V V V
Subjt:  EECAICLCVYEEGERKWVKMSKCGHIFHRRCIKGWLKVGRRCPLCRSSVSVFV

SwissProt top hitse value%identityAlignment
O64763 E3 ubiquitin-protein ligase ATL92.1e-0745.1Show/hide
Query:  GGEECAICLCVYEEGERKWVKMSKCGHIFHRRCIKGWLKVGRRCPLCRSSV
        GG ECA+CLC +E+ E   + M  C H+FH  C+  WL     CPLCR+ +
Subjt:  GGEECAICLCVYEEGERKWVKMSKCGHIFHRRCIKGWLKVGRRCPLCRSSV

O80927 RING-H2 finger protein ATL332.8e-0744.23Show/hide
Query:  GEECAICLCVYEEGERKWVKMSKCGHIFHRRCIKGWLKVGRRCPLCRSSVSV
        G EC++CL V+ + + +  ++S+C H FH  CI+ WLK    CP+CR+ VSV
Subjt:  GEECAICLCVYEEGERKWVKMSKCGHIFHRRCIKGWLKVGRRCPLCRSSVSV

Q9M0C3 RING-H2 finger protein ATL149.6e-0840Show/hide
Query:  GGEECAICLCVYEEGERKWV-KMSKCGHIFHRRCIKGWLKVGRRCPLCRSSVSVF
        GG++C +C+  + +G+  W  K+ +CGH+FHR+C+  WL     CP+CR  V  F
Subjt:  GGEECAICLCVYEEGERKWV-KMSKCGHIFHRRCIKGWLKVGRRCPLCRSSVSVF

Q9M0R4 Putative RING-H2 finger protein ATL371.9e-0848.15Show/hide
Query:  GGEECAICLCVYEEGE-RKWVKMSKCGHIFHRRCIKGWLKVGRRCPLCRSSVSV
        GG ECAICLC +E+ E  +W  M  C H FH  CI  WL     CP+CR+++S+
Subjt:  GGEECAICLCVYEEGE-RKWVKMSKCGHIFHRRCIKGWLKVGRRCPLCRSSVSV

Q9ZT50 E3 ubiquitin-protein ligase RHA2A7.4e-0844.23Show/hide
Query:  GGEECAICLCVYEEGERKWVKMSKCGHIFHRRCIKGWL-KVGRRCPLCRSSV
        GG +C +CL   +EGE   V+  +C H+FH++C++GWL +    CPLCRS++
Subjt:  GGEECAICLCVYEEGERKWVKMSKCGHIFHRRCIKGWL-KVGRRCPLCRSSV

Arabidopsis top hitse value%identityAlignment
AT1G15100.1 RING-H2 finger A2A5.2e-0944.23Show/hide
Query:  GGEECAICLCVYEEGERKWVKMSKCGHIFHRRCIKGWL-KVGRRCPLCRSSV
        GG +C +CL   +EGE   V+  +C H+FH++C++GWL +    CPLCRS++
Subjt:  GGEECAICLCVYEEGERKWVKMSKCGHIFHRRCIKGWL-KVGRRCPLCRSSV

AT2G35000.1 RING/U-box superfamily protein1.5e-0845.1Show/hide
Query:  GGEECAICLCVYEEGERKWVKMSKCGHIFHRRCIKGWLKVGRRCPLCRSSV
        GG ECA+CLC +E+ E   + M  C H+FH  C+  WL     CPLCR+ +
Subjt:  GGEECAICLCVYEEGERKWVKMSKCGHIFHRRCIKGWLKVGRRCPLCRSSV

AT2G37580.1 RING/U-box superfamily protein2.0e-0844.23Show/hide
Query:  GEECAICLCVYEEGERKWVKMSKCGHIFHRRCIKGWLKVGRRCPLCRSSVSV
        G EC++CL V+ + + +  ++S+C H FH  CI+ WLK    CP+CR+ VSV
Subjt:  GEECAICLCVYEEGERKWVKMSKCGHIFHRRCIKGWLKVGRRCPLCRSSVSV

AT4G09130.1 RING/U-box superfamily protein1.4e-0948.15Show/hide
Query:  GGEECAICLCVYEEGE-RKWVKMSKCGHIFHRRCIKGWLKVGRRCPLCRSSVSV
        GG ECAICLC +E+ E  +W  M  C H FH  CI  WL     CP+CR+++S+
Subjt:  GGEECAICLCVYEEGE-RKWVKMSKCGHIFHRRCIKGWLKVGRRCPLCRSSVSV

AT4G30370.1 RING/U-box superfamily protein6.9e-0940Show/hide
Query:  GGEECAICLCVYEEGERKWV-KMSKCGHIFHRRCIKGWLKVGRRCPLCRSSVSVF
        GG++C +C+  + +G+  W  K+ +CGH+FHR+C+  WL     CP+CR  V  F
Subjt:  GGEECAICLCVYEEGERKWV-KMSKCGHIFHRRCIKGWLKVGRRCPLCRSSVSVF


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
GGCGGCGAAGAATGTGCGATTTGCTTGTGCGTATATGAAGAAGGGGAGAGGAAGTGGGTGAAGATGAGTAAATGCGGCCATATATTTCACCGTCGATGTATCAAGGGGTG
GCTGAAGGTCGGCCGCCGCTGCCCGCTTTGCCGGAGCTCTGTTTCCGTCTTCGTCCGCTGTGGAAACACCGCCCTCCCTCCGGCTTCGACTTCG
mRNA sequenceShow/hide mRNA sequence
GGCGGCGAAGAATGTGCGATTTGCTTGTGCGTATATGAAGAAGGGGAGAGGAAGTGGGTGAAGATGAGTAAATGCGGCCATATATTTCACCGTCGATGTATCAAGGGGTG
GCTGAAGGTCGGCCGCCGCTGCCCGCTTTGCCGGAGCTCTGTTTCCGTCTTCGTCCGCTGTGGAAACACCGCCCTCCCTCCGGCTTCGACTTCG
Protein sequenceShow/hide protein sequence
GGEECAICLCVYEEGERKWVKMSKCGHIFHRRCIKGWLKVGRRCPLCRSSVSVFVRCGNTALPPASTS