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MS013060 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS013060
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionRING-H2 finger protein ATL14-like
Genome locationscaffold997:153306..153434
RNA-Seq ExpressionMS013060
SyntenyMS013060
Gene Ontology termsGO:0016567 - protein ubiquitination (biological process)
GO:0016021 - integral component of membrane (cellular component)
InterPro domainsIPR001841 - Zinc finger, RING-type
IPR013083 - Zinc finger, RING/FYVE/PHD-type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0067736.1 RING-H2 finger protein ATL52-like [Cucumis melo var. makuwa]2.7e-1374.42Show/hide
Query:  CAICIEGFAEEEKCGVIENCGHFFHKDCIDRWLKIESRCPLCR
        CAICIE F +EE CGV+E+CGH FH+DC+D+WL+IESRCPLCR
Subjt:  CAICIEGFAEEEKCGVIENCGHFFHKDCIDRWLKIESRCPLCR

KAG6583431.1 RING-H2 finger protein ATL5, partial [Cucurbita argyrosperma subsp. sororia]2.7e-1379.07Show/hide
Query:  CAICIEGFAEEEKCGVIENCGHFFHKDCIDRWLKIESRCPLCR
        CAICIEGF EEE CGV++ CGH FHK CID+WL IESRCPLCR
Subjt:  CAICIEGFAEEEKCGVIENCGHFFHKDCIDRWLKIESRCPLCR

KAG7019192.1 E3 ubiquitin-protein ligase ATL42, partial [Cucurbita argyrosperma subsp. argyrosperma]2.1e-1379.07Show/hide
Query:  CAICIEGFAEEEKCGVIENCGHFFHKDCIDRWLKIESRCPLCR
        CAICIEGF EEE CGV++ CGH FHK CID+WL IESRCPLCR
Subjt:  CAICIEGFAEEEKCGVIENCGHFFHKDCIDRWLKIESRCPLCR

XP_022158253.1 RING-H2 finger protein ATL14-like [Momordica charantia]2.5e-19100Show/hide
Query:  CAICIEGFAEEEKCGVIENCGHFFHKDCIDRWLKIESRCPLCR
        CAICIEGFAEEEKCGVIENCGHFFHKDCIDRWLKIESRCPLCR
Subjt:  CAICIEGFAEEEKCGVIENCGHFFHKDCIDRWLKIESRCPLCR

XP_031742489.1 RING-H2 finger protein ATL1-like [Cucumis sativus]4.5e-1686.05Show/hide
Query:  CAICIEGFAEEEKCGVIENCGHFFHKDCIDRWLKIESRCPLCR
        CAICIEGF EEE CGVIENCGHFFH+DCI+RWL+IE RCPLCR
Subjt:  CAICIEGFAEEEKCGVIENCGHFFHKDCIDRWLKIESRCPLCR

TrEMBL top hitse value%identityAlignment
A0A1S4E1K2 RING-type E3 ubiquitin transferase1.3e-1374.42Show/hide
Query:  CAICIEGFAEEEKCGVIENCGHFFHKDCIDRWLKIESRCPLCR
        CAICIE F +EE CGV+E+CGH FH+DC+D+WL+IESRCPLCR
Subjt:  CAICIEGFAEEEKCGVIENCGHFFHKDCIDRWLKIESRCPLCR

A0A5A7VMH1 RING-H2 finger protein ATL52-like1.3e-1374.42Show/hide
Query:  CAICIEGFAEEEKCGVIENCGHFFHKDCIDRWLKIESRCPLCR
        CAICIE F +EE CGV+E+CGH FH+DC+D+WL+IESRCPLCR
Subjt:  CAICIEGFAEEEKCGVIENCGHFFHKDCIDRWLKIESRCPLCR

A0A5D3BE50 RING-type E3 ubiquitin transferase1.3e-1374.42Show/hide
Query:  CAICIEGFAEEEKCGVIENCGHFFHKDCIDRWLKIESRCPLCR
        CAICIE F +EE CGV+E+CGH FH+DC+D+WL+IESRCPLCR
Subjt:  CAICIEGFAEEEKCGVIENCGHFFHKDCIDRWLKIESRCPLCR

A0A6J1DVK4 RING-H2 finger protein ATL14-like1.2e-19100Show/hide
Query:  CAICIEGFAEEEKCGVIENCGHFFHKDCIDRWLKIESRCPLCR
        CAICIEGFAEEEKCGVIENCGHFFHKDCIDRWLKIESRCPLCR
Subjt:  CAICIEGFAEEEKCGVIENCGHFFHKDCIDRWLKIESRCPLCR

A0A6J1HJU0 RING-type E3 ubiquitin transferase2.9e-1376.74Show/hide
Query:  CAICIEGFAEEEKCGVIENCGHFFHKDCIDRWLKIESRCPLCR
        CAICIEGF EEE CGV++ CGH FHK CID+WL+I SRCPLCR
Subjt:  CAICIEGFAEEEKCGVIENCGHFFHKDCIDRWLKIESRCPLCR

SwissProt top hitse value%identityAlignment
P93823 RING-H2 finger protein ATL11.5e-0953.49Show/hide
Query:  CAICIEGFAEEEKCGVIENCGHFFHKDCIDRWLKIESRCPLCR
        C++C+  F E+EK  +I NC H FH DCID WL+  + CPLCR
Subjt:  CAICIEGFAEEEKCGVIENCGHFFHKDCIDRWLKIESRCPLCR

Q8GW38 RING-H2 finger protein ATL471.9e-0953.49Show/hide
Query:  CAICIEGFAEEEKCGVIENCGHFFHKDCIDRWLKIESRCPLCR
        CA+C+  F+E++K  ++ NC H FH DCID WL   S CPLCR
Subjt:  CAICIEGFAEEEKCGVIENCGHFFHKDCIDRWLKIESRCPLCR

Q9LSW9 RING-H2 finger protein ATL163.8e-1053.49Show/hide
Query:  CAICIEGFAEEEKCGVIENCGHFFHKDCIDRWLKIESRCPLCR
        C++C+  F +EEK  +I NC H FH DCID WL+  + CPLCR
Subjt:  CAICIEGFAEEEKCGVIENCGHFFHKDCIDRWLKIESRCPLCR

Q9LZJ6 RING-H2 finger protein ATL53.2e-0948.84Show/hide
Query:  CAICIEGFAEEEKCGVIENCGHFFHKDCIDRWLKIESRCPLCR
        C++C+  F E+++  V+  CGH FH DCID W +  S CPLCR
Subjt:  CAICIEGFAEEEKCGVIENCGHFFHKDCIDRWLKIESRCPLCR

Q9SRM0 RING-H2 finger protein ATL661.3e-1058.14Show/hide
Query:  CAICIEGFAEEEKCGVIENCGHFFHKDCIDRWLKIESRCPLCR
        C IC+ GF E EK  V+  C H +H +C+DRWLK ES CPLCR
Subjt:  CAICIEGFAEEEKCGVIENCGHFFHKDCIDRWLKIESRCPLCR

Arabidopsis top hitse value%identityAlignment
AT1G04360.1 RING/U-box superfamily protein1.0e-1053.49Show/hide
Query:  CAICIEGFAEEEKCGVIENCGHFFHKDCIDRWLKIESRCPLCR
        C++C+  F E+EK  +I NC H FH DCID WL+  + CPLCR
Subjt:  CAICIEGFAEEEKCGVIENCGHFFHKDCIDRWLKIESRCPLCR

AT1G23980.1 RING/U-box superfamily protein1.3e-1053.49Show/hide
Query:  CAICIEGFAEEEKCGVIENCGHFFHKDCIDRWLKIESRCPLCR
        CA+C+  F+E++K  ++ NC H FH DCID WL   S CPLCR
Subjt:  CAICIEGFAEEEKCGVIENCGHFFHKDCIDRWLKIESRCPLCR

AT3G11110.1 RING/U-box superfamily protein9.3e-1258.14Show/hide
Query:  CAICIEGFAEEEKCGVIENCGHFFHKDCIDRWLKIESRCPLCR
        C IC+ GF E EK  V+  C H +H +C+DRWLK ES CPLCR
Subjt:  CAICIEGFAEEEKCGVIENCGHFFHKDCIDRWLKIESRCPLCR

AT3G62690.1 AtL52.3e-1048.84Show/hide
Query:  CAICIEGFAEEEKCGVIENCGHFFHKDCIDRWLKIESRCPLCR
        C++C+  F E+++  V+  CGH FH DCID W +  S CPLCR
Subjt:  CAICIEGFAEEEKCGVIENCGHFFHKDCIDRWLKIESRCPLCR

AT5G43420.1 RING/U-box superfamily protein2.7e-1153.49Show/hide
Query:  CAICIEGFAEEEKCGVIENCGHFFHKDCIDRWLKIESRCPLCR
        C++C+  F +EEK  +I NC H FH DCID WL+  + CPLCR
Subjt:  CAICIEGFAEEEKCGVIENCGHFFHKDCIDRWLKIESRCPLCR


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
TGCGCGATCTGCATTGAGGGATTTGCGGAGGAAGAGAAGTGTGGAGTTATTGAAAATTGCGGCCATTTTTTCCATAAGGATTGTATCGATCGGTGGCTGAAGATTGAGAG
CCGTTGCCCACTCTGCCGC
mRNA sequenceShow/hide mRNA sequence
TGCGCGATCTGCATTGAGGGATTTGCGGAGGAAGAGAAGTGTGGAGTTATTGAAAATTGCGGCCATTTTTTCCATAAGGATTGTATCGATCGGTGGCTGAAGATTGAGAG
CCGTTGCCCACTCTGCCGC
Protein sequenceShow/hide protein sequence
CAICIEGFAEEEKCGVIENCGHFFHKDCIDRWLKIESRCPLCR