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MS013104 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS013104
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Descriptioncytochrome c oxidase subunit 5b-1, mitochondrial-like
Genome locationscaffold459:212366..215154
RNA-Seq ExpressionMS013104
SyntenyMS013104
Gene Ontology termsGO:0006123 - mitochondrial electron transport, cytochrome c to oxygen (biological process)
GO:0005751 - mitochondrial respiratory chain complex IV (cellular component)
InterPro domainsIPR002124 - Cytochrome c oxidase, subunit Vb
IPR036972 - Cytochrome c oxidase, subunit Vb superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6606781.1 Cytochrome c oxidase subunit 5b-2, mitochondrial, partial [Cucurbita argyrosperma subsp. sororia]3.0e-6278.62Show/hide
Query:  MWRRLLSSHLKSLKPRTSSSTAPSPPSGSISRAARR--PASSHVSSSPSVSLFARHYGAEAAGAGLKKKVGDVMPIATGHEREELEAALEGRDILDIDHP
        MWR+LL S L++LK   S+S A S P G ISRA+R    ASSHV  SP VS +ARHYGAEA  AGLKKKV DVMPIATGHEREELEAALEGRDILDID+P
Subjt:  MWRRLLSSHLKSLKPRTSSSTAPSPPSGSISRAARR--PASSHVSSSPSVSLFARHYGAEAAGAGLKKKVGDVMPIATGHEREELEAALEGRDILDIDHP

Query:  VGPFGTKEAPAVVKSYYDERLVGCPGGEGEDEHDVVWFRLKKGEPHECPVCTQYFAVRI
        VGPFGTKE PAV+KSYYDERLVGCPGGEGEDEHDVVWFRLKKGEPHECPVCTQYF + +
Subjt:  VGPFGTKEAPAVVKSYYDERLVGCPGGEGEDEHDVVWFRLKKGEPHECPVCTQYFAVRI

XP_022153669.1 cytochrome c oxidase subunit 5b-2, mitochondrial-like [Momordica charantia]3.5e-8298.09Show/hide
Query:  MWRRLLSSHLKSLKPRTSSSTAPSPPSGSISRAARRPASSHVSSSPSVSLFARHYGAEAAGAGLKKKVGDVMPIATGHEREELEAALEGRDILDIDHPVG
        MWRRLLSSHLKSLKPRTSSSTAPSPPSGSISRAARRPASSHVSSSPSVSLFARHYGAEAAGAGLKKKVGDVMPIATGHEREELEAALEGRDILDIDHPVG
Subjt:  MWRRLLSSHLKSLKPRTSSSTAPSPPSGSISRAARRPASSHVSSSPSVSLFARHYGAEAAGAGLKKKVGDVMPIATGHEREELEAALEGRDILDIDHPVG

Query:  PFGTKEAPAVVKSYYDERLVGCPGGEGEDEHDVVWFRLKKGEPHECPVCTQYFAVRI
        PFGTKEAPAVVKSYYDERLVGCPGGEGEDEHDVVWFRLKKGEPHECPVCTQYFA+ +
Subjt:  PFGTKEAPAVVKSYYDERLVGCPGGEGEDEHDVVWFRLKKGEPHECPVCTQYFAVRI

XP_022998034.1 cytochrome c oxidase subunit 5b-1, mitochondrial-like [Cucurbita maxima]3.0e-6278.62Show/hide
Query:  MWRRLLSSHLKSLKPRTSSSTAPSPPSGSISRAARR--PASSHVSSSPSVSLFARHYGAEAAGAGLKKKVGDVMPIATGHEREELEAALEGRDILDIDHP
        MWR+LL S L++LK   S+S A S P G ISRA+R    ASSHV  SP VS +ARHYG EAA AGLKKKV DVMPIATGHEREELEAALEGRDILDID+P
Subjt:  MWRRLLSSHLKSLKPRTSSSTAPSPPSGSISRAARR--PASSHVSSSPSVSLFARHYGAEAAGAGLKKKVGDVMPIATGHEREELEAALEGRDILDIDHP

Query:  VGPFGTKEAPAVVKSYYDERLVGCPGGEGEDEHDVVWFRLKKGEPHECPVCTQYFAVRI
        VGPFGTKE PAV+KSYYDERLVGCPGGEGEDEHDVVWFRLKKGEPHECPVCTQYF + +
Subjt:  VGPFGTKEAPAVVKSYYDERLVGCPGGEGEDEHDVVWFRLKKGEPHECPVCTQYFAVRI

XP_023523888.1 cytochrome c oxidase subunit 5b-1, mitochondrial-like [Cucurbita pepo subsp. pepo]1.0e-6279.25Show/hide
Query:  MWRRLLSSHLKSLKPRTSSSTAPSPPSGSISRAARR--PASSHVSSSPSVSLFARHYGAEAAGAGLKKKVGDVMPIATGHEREELEAALEGRDILDIDHP
        MWR+LL S L++LK   S+S A S P G ISRA+R    ASSHV  SP VS +ARHYGAEAA AGLKKKV DVMPIATGHEREELEAALEGRDILDID+P
Subjt:  MWRRLLSSHLKSLKPRTSSSTAPSPPSGSISRAARR--PASSHVSSSPSVSLFARHYGAEAAGAGLKKKVGDVMPIATGHEREELEAALEGRDILDIDHP

Query:  VGPFGTKEAPAVVKSYYDERLVGCPGGEGEDEHDVVWFRLKKGEPHECPVCTQYFAVRI
        VGPFGTKE PAV+KSYYDERLVGCPGGEGEDEHDVVWFRLKKGEPHECPVCTQYF + +
Subjt:  VGPFGTKEAPAVVKSYYDERLVGCPGGEGEDEHDVVWFRLKKGEPHECPVCTQYFAVRI

XP_038896495.1 cytochrome c oxidase subunit 5b-2, mitochondrial-like [Benincasa hispida]3.6e-6377.71Show/hide
Query:  MWRRLLSSHLKSLKPRTSSSTAPSPPSGSISRAARRPASSHVSSSPSVSLFARHYGAEAAGAGLKKKVGDVMPIATGHEREELEAALEGRDILDIDHPVG
        MWRRLLSS LKSLK   SSST  S P G IS+A RR A SHVS SP+VSLFA HY +++A  GLKKKV D+MPIATGHEREELEA+LEG+DILDI+HPVG
Subjt:  MWRRLLSSHLKSLKPRTSSSTAPSPPSGSISRAARRPASSHVSSSPSVSLFARHYGAEAAGAGLKKKVGDVMPIATGHEREELEAALEGRDILDIDHPVG

Query:  PFGTKEAPAVVKSYYDERLVGCPGGEGEDEHDVVWFRLKKGEPHECPVCTQYFAVRI
        PFGTKEAPAV+KSYYDERLVGCPGGEGEDEHDVVWFRL+KG PHECPVC+QYF + +
Subjt:  PFGTKEAPAVVKSYYDERLVGCPGGEGEDEHDVVWFRLKKGEPHECPVCTQYFAVRI

TrEMBL top hitse value%identityAlignment
A0A5A7T437 Cytochrome c oxidase subunit 5b-25.6e-6276.43Show/hide
Query:  MWRRLLSSHLKSLKPRTSSSTAPSPPSGSISRAARRPASSHVSSSPSVSLFARHYGAEAAGAGLKKKVGDVMPIATGHEREELEAALEGRDILDIDHPVG
        MWRRLLSS LKSLK   SSST  S P G IS+AAR  A+SH+S S +VSLFARHY +++A  GLKKKV DVMPIATGHEREELEA+LEG+DILDI+HPVG
Subjt:  MWRRLLSSHLKSLKPRTSSSTAPSPPSGSISRAARRPASSHVSSSPSVSLFARHYGAEAAGAGLKKKVGDVMPIATGHEREELEAALEGRDILDIDHPVG

Query:  PFGTKEAPAVVKSYYDERLVGCPGGEGEDEHDVVWFRLKKGEPHECPVCTQYFAVRI
        PFGTKEAPAV+KSYYDER+VGCPGGE EDEHDVVWFRL+KG PHECPVC+QYF + +
Subjt:  PFGTKEAPAVVKSYYDERLVGCPGGEGEDEHDVVWFRLKKGEPHECPVCTQYFAVRI

A0A6J1DJR7 cytochrome c oxidase subunit 5b-2, mitochondrial-like1.7e-8298.09Show/hide
Query:  MWRRLLSSHLKSLKPRTSSSTAPSPPSGSISRAARRPASSHVSSSPSVSLFARHYGAEAAGAGLKKKVGDVMPIATGHEREELEAALEGRDILDIDHPVG
        MWRRLLSSHLKSLKPRTSSSTAPSPPSGSISRAARRPASSHVSSSPSVSLFARHYGAEAAGAGLKKKVGDVMPIATGHEREELEAALEGRDILDIDHPVG
Subjt:  MWRRLLSSHLKSLKPRTSSSTAPSPPSGSISRAARRPASSHVSSSPSVSLFARHYGAEAAGAGLKKKVGDVMPIATGHEREELEAALEGRDILDIDHPVG

Query:  PFGTKEAPAVVKSYYDERLVGCPGGEGEDEHDVVWFRLKKGEPHECPVCTQYFAVRI
        PFGTKEAPAVVKSYYDERLVGCPGGEGEDEHDVVWFRLKKGEPHECPVCTQYFA+ +
Subjt:  PFGTKEAPAVVKSYYDERLVGCPGGEGEDEHDVVWFRLKKGEPHECPVCTQYFAVRI

A0A6J1DL93 cytochrome c oxidase subunit 5b-2, mitochondrial-like1.6e-6177.07Show/hide
Query:  MWRRLLSSHLKSLKPRTSSSTAPSPPSGSISRAARRPASSHVSSSPSVSLFARHYGAEAAGAGLKKKVGDVMPIATGHEREELEAALEGRDILDIDHPVG
        MWRRLLSS LK+LK   SSS  P+P  G IS+A R  ASSH S SPS  LF RHY +++A +GLKKKV DVMPIATGHEREELEAALEGRDILDIDHPVG
Subjt:  MWRRLLSSHLKSLKPRTSSSTAPSPPSGSISRAARRPASSHVSSSPSVSLFARHYGAEAAGAGLKKKVGDVMPIATGHEREELEAALEGRDILDIDHPVG

Query:  PFGTKEAPAVVKSYYDERLVGCPGGEGEDEHDVVWFRLKKGEPHECPVCTQYFAVRI
        PFGTKEAPAV+KSYYDER+VGCPGGE EDEHDVVWFRLKKG PHECPVC+QYF + +
Subjt:  PFGTKEAPAVVKSYYDERLVGCPGGEGEDEHDVVWFRLKKGEPHECPVCTQYFAVRI

A0A6J1GC67 cytochrome c oxidase subunit 5b-1, mitochondrial-like4.3e-6277.99Show/hide
Query:  MWRRLLSSHLKSLKPRTSSSTAPSPPSGSISRAARR--PASSHVSSSPSVSLFARHYGAEAAGAGLKKKVGDVMPIATGHEREELEAALEGRDILDIDHP
        MWR+ L S L++LK   S+S A S P G ISRA+R    ASSHV  SP VS +ARHYGAEA  AGLKKKV DVMPIATGHEREELEAALEGRDILDID+P
Subjt:  MWRRLLSSHLKSLKPRTSSSTAPSPPSGSISRAARR--PASSHVSSSPSVSLFARHYGAEAAGAGLKKKVGDVMPIATGHEREELEAALEGRDILDIDHP

Query:  VGPFGTKEAPAVVKSYYDERLVGCPGGEGEDEHDVVWFRLKKGEPHECPVCTQYFAVRI
        VGPFGTKE PAV+KSYYDERLVGCPGGEGEDEHDVVWFRLKKGEPHECPVCTQYF + +
Subjt:  VGPFGTKEAPAVVKSYYDERLVGCPGGEGEDEHDVVWFRLKKGEPHECPVCTQYFAVRI

A0A6J1KD83 cytochrome c oxidase subunit 5b-1, mitochondrial-like1.5e-6278.62Show/hide
Query:  MWRRLLSSHLKSLKPRTSSSTAPSPPSGSISRAARR--PASSHVSSSPSVSLFARHYGAEAAGAGLKKKVGDVMPIATGHEREELEAALEGRDILDIDHP
        MWR+LL S L++LK   S+S A S P G ISRA+R    ASSHV  SP VS +ARHYG EAA AGLKKKV DVMPIATGHEREELEAALEGRDILDID+P
Subjt:  MWRRLLSSHLKSLKPRTSSSTAPSPPSGSISRAARR--PASSHVSSSPSVSLFARHYGAEAAGAGLKKKVGDVMPIATGHEREELEAALEGRDILDIDHP

Query:  VGPFGTKEAPAVVKSYYDERLVGCPGGEGEDEHDVVWFRLKKGEPHECPVCTQYFAVRI
        VGPFGTKE PAV+KSYYDERLVGCPGGEGEDEHDVVWFRLKKGEPHECPVCTQYF + +
Subjt:  VGPFGTKEAPAVVKSYYDERLVGCPGGEGEDEHDVVWFRLKKGEPHECPVCTQYFAVRI

SwissProt top hitse value%identityAlignment
P29505 Cytochrome c oxidase subunit 56.5e-0738.46Show/hide
Query:  DIDHPV--GPFGTKEAPAVVKSYYDERLVGCPGGEGEDEHDVVWFRLKKGEPHECPVCTQYFAVR
        D  H V  G FGT ++P +V+S +  R+V C GG+GE EHD+++  + + +P  C  C Q F ++
Subjt:  DIDHPV--GPFGTKEAPAVVKSYYDERLVGCPGGEGEDEHDVVWFRLKKGEPHECPVCTQYFAVR

P79010 Cytochrome c oxidase subunit 4, mitochondrial8.8e-0425.66Show/hide
Query:  LSSHLKSLKPRTSSSTAPSPPSGSISRAARRPASSHVSSSPSVSLFARHYGAEAAGAGLKKKVGDVMPIATGHEREELEAALEGRDILDIDH-PVGPFGT
        ++S L+  + R +  +  S   G +S + RR   + V ++      A+         G   +V   +  ATG ER EL + L GRD  D+        GT
Subjt:  LSSHLKSLKPRTSSSTAPSPPSGSISRAARRPASSHVSSSPSVSLFARHYGAEAAGAGLKKKVGDVMPIATGHEREELEAALEGRDILDIDH-PVGPFGT

Query:  KEAPAVVKSYYDERLVGCPGGEGEDEHDVVWFRLKKGEPHECPVCTQYFAVR
           P +V S    R +GC G      H+++W  + K +   CP C   + ++
Subjt:  KEAPAVVKSYYDERLVGCPGGEGEDEHDVVWFRLKKGEPHECPVCTQYFAVR

Q9LW15 Cytochrome c oxidase subunit 5b-1, mitochondrial1.6e-4256.17Show/hide
Query:  MWRRLLSSHLKSLKPRTSSSTAPSPPSGSISRAARRP-----ASSHVSSSPSVSLFARHYGAEAAGAGLKKKVGDVMPIATGHEREELEAALEGRDILDI
        MWRR++SS LK+L    ++    + P  SI+ A  RP     A++  + S S  +  R + +++      KKV DVMPIATGHE+EELEA LEGR + DI
Subjt:  MWRRLLSSHLKSLKPRTSSSTAPSPPSGSISRAARRP-----ASSHVSSSPSVSLFARHYGAEAAGAGLKKKVGDVMPIATGHEREELEAALEGRDILDI

Query:  DHPVGPFGTKEAPAVVKSYYDERLVGCPGGEGEDEHDVVWFRLKKGEPHECPVCTQYFAVRI
        D P GPFGTKEAPA+VKSYYD+R+VGCPGGEGEDEHDVVWF L+KG+  ECPVCTQYF + +
Subjt:  DHPVGPFGTKEAPAVVKSYYDERLVGCPGGEGEDEHDVVWFRLKKGEPHECPVCTQYFAVRI

Q9SSB8 Cytochrome c oxidase subunit 5b-2, mitochondrial9.3e-4660.76Show/hide
Query:  MWRRLLSSHLKSLKPRTSSSTAPSPPSGSISRAARRPASSHVSSSPSV-SLFARHYGAEAAGAGLKKKVGDVMPIATGHEREELEAALEGRDILDIDHPV
        MWRR++SSHLKS+     S  APS    ++  +     S+  SS P+  S+F+R  G+ AA   +KK+V DVMPIATGHE+EEL+A LEGR + DID P 
Subjt:  MWRRLLSSHLKSLKPRTSSSTAPSPPSGSISRAARRPASSHVSSSPSV-SLFARHYGAEAAGAGLKKKVGDVMPIATGHEREELEAALEGRDILDIDHPV

Query:  GPFGTKEAPAVVKSYYDERLVGCPGGEGEDEHDVVWFRLKKGEPHECPVCTQYFAVRI
        GPFGTKEAPAVVKSYYD R+VGCPGGEGEDEHDVVWF L+KG+  ECPVCTQYF + +
Subjt:  GPFGTKEAPAVVKSYYDERLVGCPGGEGEDEHDVVWFRLKKGEPHECPVCTQYFAVRI

Q9SSS5 Putative cytochrome c oxidase subunit 5b-like1.5e-2467.61Show/hide
Query:  LEAALEGRDILDIDHPVGPFGTKEAPAVVKSYYDERLVGCPGGEGEDEHDVVWFRLKKGEPHECPVCTQYF
        L+    GR +LDIDHP  PFGTKE+PAVV+SY+D+R +GC GGEGED HDVVWF L KG+  ECPVC+QYF
Subjt:  LEAALEGRDILDIDHPVGPFGTKEAPAVVKSYYDERLVGCPGGEGEDEHDVVWFRLKKGEPHECPVCTQYF

Arabidopsis top hitse value%identityAlignment
AT1G52710.1 Rubredoxin-like superfamily protein1.1e-2567.61Show/hide
Query:  LEAALEGRDILDIDHPVGPFGTKEAPAVVKSYYDERLVGCPGGEGEDEHDVVWFRLKKGEPHECPVCTQYF
        L+    GR +LDIDHP  PFGTKE+PAVV+SY+D+R +GC GGEGED HDVVWF L KG+  ECPVC+QYF
Subjt:  LEAALEGRDILDIDHPVGPFGTKEAPAVVKSYYDERLVGCPGGEGEDEHDVVWFRLKKGEPHECPVCTQYF

AT1G80230.1 Rubredoxin-like superfamily protein6.6e-4760.76Show/hide
Query:  MWRRLLSSHLKSLKPRTSSSTAPSPPSGSISRAARRPASSHVSSSPSV-SLFARHYGAEAAGAGLKKKVGDVMPIATGHEREELEAALEGRDILDIDHPV
        MWRR++SSHLKS+     S  APS    ++  +     S+  SS P+  S+F+R  G+ AA   +KK+V DVMPIATGHE+EEL+A LEGR + DID P 
Subjt:  MWRRLLSSHLKSLKPRTSSSTAPSPPSGSISRAARRPASSHVSSSPSV-SLFARHYGAEAAGAGLKKKVGDVMPIATGHEREELEAALEGRDILDIDHPV

Query:  GPFGTKEAPAVVKSYYDERLVGCPGGEGEDEHDVVWFRLKKGEPHECPVCTQYFAVRI
        GPFGTKEAPAVVKSYYD R+VGCPGGEGEDEHDVVWF L+KG+  ECPVCTQYF + +
Subjt:  GPFGTKEAPAVVKSYYDERLVGCPGGEGEDEHDVVWFRLKKGEPHECPVCTQYFAVRI

AT3G15640.1 Rubredoxin-like superfamily protein1.2e-4356.17Show/hide
Query:  MWRRLLSSHLKSLKPRTSSSTAPSPPSGSISRAARRP-----ASSHVSSSPSVSLFARHYGAEAAGAGLKKKVGDVMPIATGHEREELEAALEGRDILDI
        MWRR++SS LK+L    ++    + P  SI+ A  RP     A++  + S S  +  R + +++      KKV DVMPIATGHE+EELEA LEGR + DI
Subjt:  MWRRLLSSHLKSLKPRTSSSTAPSPPSGSISRAARRP-----ASSHVSSSPSVSLFARHYGAEAAGAGLKKKVGDVMPIATGHEREELEAALEGRDILDI

Query:  DHPVGPFGTKEAPAVVKSYYDERLVGCPGGEGEDEHDVVWFRLKKGEPHECPVCTQYFAVRI
        D P GPFGTKEAPA+VKSYYD+R+VGCPGGEGEDEHDVVWF L+KG+  ECPVCTQYF + +
Subjt:  DHPVGPFGTKEAPAVVKSYYDERLVGCPGGEGEDEHDVVWFRLKKGEPHECPVCTQYFAVRI

AT3G15640.2 Rubredoxin-like superfamily protein2.2e-4256.17Show/hide
Query:  MWRRLLSSHLKSLKPRTSSSTAPSPPSGSISRAARRP-----ASSHVSSSPSVSLFARHYGAEAAGAGLKKKVGDVMPIATGHEREELEAALEGRDILDI
        MWRR++SS LK+L    ++    + P  SI+ A  RP     A++  + S S  +  R + +++      KKV DVMPIATGHE+EELEA LEGR + DI
Subjt:  MWRRLLSSHLKSLKPRTSSSTAPSPPSGSISRAARRP-----ASSHVSSSPSVSLFARHYGAEAAGAGLKKKVGDVMPIATGHEREELEAALEGRDILDI

Query:  DHPVGPFGTKEAPAVVKSYYDERLVGCPGGEGEDEHDVVWFRLKKGEPHECPVCTQYFAVRI
        D P GPFGTKEAPA+VKSYYD+R+VGCPGGEGEDEHDVVWF L+KG+  ECPVCTQYF + +
Subjt:  DHPVGPFGTKEAPAVVKSYYDERLVGCPGGEGEDEHDVVWFRLKKGEPHECPVCTQYFAVRI


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTGGAGGAGATTGCTCTCTTCGCACCTCAAATCCCTAAAACCTCGAACTTCATCATCCACGGCACCGTCTCCTCCATCGGGATCCATTTCCAGAGCCGCACGACGTCC
CGCTTCATCTCATGTTTCTTCTTCACCTTCCGTATCGCTCTTCGCTCGCCATTATGGCGCTGAGGCTGCTGGTGCTGGTCTGAAGAAGAAGGTTGGGGATGTCATGCCAA
TTGCAACCGGACACGAGCGCGAAGAGCTTGAAGCTGCGCTTGAGGGAAGAGACATCCTTGATATAGACCATCCCGTTGGTCCTTTTGGCACCAAGGAAGCTCCTGCTGTT
GTTAAGTCATATTATGACGAAAGATTAGTTGGATGCCCTGGAGGTGAAGGCGAGGATGAGCATGATGTTGTCTGGTTTCGACTGAAGAAAGGCGAGCCACATGAATGTCC
TGTGTGCACACAGTATTTTGCGGTGAGAATT
mRNA sequenceShow/hide mRNA sequence
ATGTGGAGGAGATTGCTCTCTTCGCACCTCAAATCCCTAAAACCTCGAACTTCATCATCCACGGCACCGTCTCCTCCATCGGGATCCATTTCCAGAGCCGCACGACGTCC
CGCTTCATCTCATGTTTCTTCTTCACCTTCCGTATCGCTCTTCGCTCGCCATTATGGCGCTGAGGCTGCTGGTGCTGGTCTGAAGAAGAAGGTTGGGGATGTCATGCCAA
TTGCAACCGGACACGAGCGCGAAGAGCTTGAAGCTGCGCTTGAGGGAAGAGACATCCTTGATATAGACCATCCCGTTGGTCCTTTTGGCACCAAGGAAGCTCCTGCTGTT
GTTAAGTCATATTATGACGAAAGATTAGTTGGATGCCCTGGAGGTGAAGGCGAGGATGAGCATGATGTTGTCTGGTTTCGACTGAAGAAAGGCGAGCCACATGAATGTCC
TGTGTGCACACAGTATTTTGCGGTGAGAATT
Protein sequenceShow/hide protein sequence
MWRRLLSSHLKSLKPRTSSSTAPSPPSGSISRAARRPASSHVSSSPSVSLFARHYGAEAAGAGLKKKVGDVMPIATGHEREELEAALEGRDILDIDHPVGPFGTKEAPAV
VKSYYDERLVGCPGGEGEDEHDVVWFRLKKGEPHECPVCTQYFAVRI