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MS013108 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS013108
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Descriptionprotein ANTI-SILENCING 1 isoform X2
Genome locationscaffold459:235449..236492
RNA-Seq ExpressionMS013108
SyntenyMS013108
Gene Ontology termsGO:0006325 - chromatin organization (biological process)
GO:0003682 - chromatin binding (molecular function)
InterPro domainsIPR001025 - Bromo adjacent homology (BAH) domain
IPR043151 - Bromo adjacent homology (BAH) domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAB2623903.1 boron transporter 4-like [Pyrus ussuriensis x Pyrus communis]3.0e-4457.42Show/hide
Query:  FKWGLKTKVVKEKGYQFYESFLCNGLEYFLYDCVYIYHRGDCETTIGRLVKMFETRAHERKVKVVRFMRPIELRDFPRDFEPRWNEIFLASGESAGVSKC
        FKWG K      +G QFY SF   G+EYFLYD VY+YH G  ET IG+LV +FET  HE+KV+V+ F RP E+ +F  D+EP WNE+FL SGE  G+S  
Subjt:  FKWGLKTKVVKEKGYQFYESFLCNGLEYFLYDCVYIYHRGDCETTIGRLVKMFETRAHERKVKVVRFMRPIELRDFPRDFEPRWNEIFLASGESAGVSKC

Query:  YLLEEVIRKCNVVCTLKDGRNPQPSDAELNSADYIFYRTYDVKKCMILEDFPDEI
          L+ +  KCNVVCT KD RN QPS  EL +A+Y F RT+DV KC ILE+FPDEI
Subjt:  YLLEEVIRKCNVVCTLKDGRNPQPSDAELNSADYIFYRTYDVKKCMILEDFPDEI

XP_022153558.1 protein ANTI-SILENCING 1 isoform X1 [Momordica charantia]2.1e-9398.8Show/hide
Query:  IGERNVKNEFGFKWGLKTKVVKEKGYQFYESFLCNGLEYFLYDCVYIYHRGDCETTIGRLVKMFETRAHERKVKVVRFMRPIELRDFPRDFEPRWNEIFL
        +GERNVKNEFGFKWGLKTKVVKEKGYQFYESFLCNGLEYFLYDCVYIYHRGDCETTIGRLVKMFETRAHE+KVKVVRFMRPIELRDFPRDFEPRWNEIFL
Subjt:  IGERNVKNEFGFKWGLKTKVVKEKGYQFYESFLCNGLEYFLYDCVYIYHRGDCETTIGRLVKMFETRAHERKVKVVRFMRPIELRDFPRDFEPRWNEIFL

Query:  ASGESAGVSKCYLLEEVIRKCNVVCTLKDGRNPQPSDAELNSADYIFYRTYDVKKCMILEDFPDEI
        ASGESAGVSKCYLLEEVIRKCNVVCTLKDGRNPQPSDAELNSADYIFYRTYDVKKCMILEDFPDEI
Subjt:  ASGESAGVSKCYLLEEVIRKCNVVCTLKDGRNPQPSDAELNSADYIFYRTYDVKKCMILEDFPDEI

XP_022153560.1 protein ANTI-SILENCING 1 isoform X2 [Momordica charantia]2.1e-9398.8Show/hide
Query:  IGERNVKNEFGFKWGLKTKVVKEKGYQFYESFLCNGLEYFLYDCVYIYHRGDCETTIGRLVKMFETRAHERKVKVVRFMRPIELRDFPRDFEPRWNEIFL
        +GERNVKNEFGFKWGLKTKVVKEKGYQFYESFLCNGLEYFLYDCVYIYHRGDCETTIGRLVKMFETRAHE+KVKVVRFMRPIELRDFPRDFEPRWNEIFL
Subjt:  IGERNVKNEFGFKWGLKTKVVKEKGYQFYESFLCNGLEYFLYDCVYIYHRGDCETTIGRLVKMFETRAHERKVKVVRFMRPIELRDFPRDFEPRWNEIFL

Query:  ASGESAGVSKCYLLEEVIRKCNVVCTLKDGRNPQPSDAELNSADYIFYRTYDVKKCMILEDFPDEI
        ASGESAGVSKCYLLEEVIRKCNVVCTLKDGRNPQPSDAELNSADYIFYRTYDVKKCMILEDFPDEI
Subjt:  ASGESAGVSKCYLLEEVIRKCNVVCTLKDGRNPQPSDAELNSADYIFYRTYDVKKCMILEDFPDEI

XP_022153561.1 protein ANTI-SILENCING 1 isoform X3 [Momordica charantia]2.1e-9398.8Show/hide
Query:  IGERNVKNEFGFKWGLKTKVVKEKGYQFYESFLCNGLEYFLYDCVYIYHRGDCETTIGRLVKMFETRAHERKVKVVRFMRPIELRDFPRDFEPRWNEIFL
        +GERNVKNEFGFKWGLKTKVVKEKGYQFYESFLCNGLEYFLYDCVYIYHRGDCETTIGRLVKMFETRAHE+KVKVVRFMRPIELRDFPRDFEPRWNEIFL
Subjt:  IGERNVKNEFGFKWGLKTKVVKEKGYQFYESFLCNGLEYFLYDCVYIYHRGDCETTIGRLVKMFETRAHERKVKVVRFMRPIELRDFPRDFEPRWNEIFL

Query:  ASGESAGVSKCYLLEEVIRKCNVVCTLKDGRNPQPSDAELNSADYIFYRTYDVKKCMILEDFPDEI
        ASGESAGVSKCYLLEEVIRKCNVVCTLKDGRNPQPSDAELNSADYIFYRTYDVKKCMILEDFPDEI
Subjt:  ASGESAGVSKCYLLEEVIRKCNVVCTLKDGRNPQPSDAELNSADYIFYRTYDVKKCMILEDFPDEI

XP_022153562.1 protein ANTI-SILENCING 1 isoform X4 [Momordica charantia]1.2e-5399.04Show/hide
Query:  MFETRAHERKVKVVRFMRPIELRDFPRDFEPRWNEIFLASGESAGVSKCYLLEEVIRKCNVVCTLKDGRNPQPSDAELNSADYIFYRTYDVKKCMILEDF
        MFETRAHE+KVKVVRFMRPIELRDFPRDFEPRWNEIFLASGESAGVSKCYLLEEVIRKCNVVCTLKDGRNPQPSDAELNSADYIFYRTYDVKKCMILEDF
Subjt:  MFETRAHERKVKVVRFMRPIELRDFPRDFEPRWNEIFLASGESAGVSKCYLLEEVIRKCNVVCTLKDGRNPQPSDAELNSADYIFYRTYDVKKCMILEDF

Query:  PDEI
        PDEI
Subjt:  PDEI

TrEMBL top hitse value%identityAlignment
A0A5N5HBC9 Boron transporter 4-like1.5e-4457.42Show/hide
Query:  FKWGLKTKVVKEKGYQFYESFLCNGLEYFLYDCVYIYHRGDCETTIGRLVKMFETRAHERKVKVVRFMRPIELRDFPRDFEPRWNEIFLASGESAGVSKC
        FKWG K      +G QFY SF   G+EYFLYD VY+YH G  ET IG+LV +FET  HE+KV+V+ F RP E+ +F  D+EP WNE+FL SGE  G+S  
Subjt:  FKWGLKTKVVKEKGYQFYESFLCNGLEYFLYDCVYIYHRGDCETTIGRLVKMFETRAHERKVKVVRFMRPIELRDFPRDFEPRWNEIFLASGESAGVSKC

Query:  YLLEEVIRKCNVVCTLKDGRNPQPSDAELNSADYIFYRTYDVKKCMILEDFPDEI
          L+ +  KCNVVCT KD RN QPS  EL +A+Y F RT+DV KC ILE+FPDEI
Subjt:  YLLEEVIRKCNVVCTLKDGRNPQPSDAELNSADYIFYRTYDVKKCMILEDFPDEI

A0A6J1DH56 protein ANTI-SILENCING 1 isoform X21.0e-9398.8Show/hide
Query:  IGERNVKNEFGFKWGLKTKVVKEKGYQFYESFLCNGLEYFLYDCVYIYHRGDCETTIGRLVKMFETRAHERKVKVVRFMRPIELRDFPRDFEPRWNEIFL
        +GERNVKNEFGFKWGLKTKVVKEKGYQFYESFLCNGLEYFLYDCVYIYHRGDCETTIGRLVKMFETRAHE+KVKVVRFMRPIELRDFPRDFEPRWNEIFL
Subjt:  IGERNVKNEFGFKWGLKTKVVKEKGYQFYESFLCNGLEYFLYDCVYIYHRGDCETTIGRLVKMFETRAHERKVKVVRFMRPIELRDFPRDFEPRWNEIFL

Query:  ASGESAGVSKCYLLEEVIRKCNVVCTLKDGRNPQPSDAELNSADYIFYRTYDVKKCMILEDFPDEI
        ASGESAGVSKCYLLEEVIRKCNVVCTLKDGRNPQPSDAELNSADYIFYRTYDVKKCMILEDFPDEI
Subjt:  ASGESAGVSKCYLLEEVIRKCNVVCTLKDGRNPQPSDAELNSADYIFYRTYDVKKCMILEDFPDEI

A0A6J1DHT4 protein ANTI-SILENCING 1 isoform X45.9e-5499.04Show/hide
Query:  MFETRAHERKVKVVRFMRPIELRDFPRDFEPRWNEIFLASGESAGVSKCYLLEEVIRKCNVVCTLKDGRNPQPSDAELNSADYIFYRTYDVKKCMILEDF
        MFETRAHE+KVKVVRFMRPIELRDFPRDFEPRWNEIFLASGESAGVSKCYLLEEVIRKCNVVCTLKDGRNPQPSDAELNSADYIFYRTYDVKKCMILEDF
Subjt:  MFETRAHERKVKVVRFMRPIELRDFPRDFEPRWNEIFLASGESAGVSKCYLLEEVIRKCNVVCTLKDGRNPQPSDAELNSADYIFYRTYDVKKCMILEDF

Query:  PDEI
        PDEI
Subjt:  PDEI

A0A6J1DJF3 protein ANTI-SILENCING 1 isoform X11.0e-9398.8Show/hide
Query:  IGERNVKNEFGFKWGLKTKVVKEKGYQFYESFLCNGLEYFLYDCVYIYHRGDCETTIGRLVKMFETRAHERKVKVVRFMRPIELRDFPRDFEPRWNEIFL
        +GERNVKNEFGFKWGLKTKVVKEKGYQFYESFLCNGLEYFLYDCVYIYHRGDCETTIGRLVKMFETRAHE+KVKVVRFMRPIELRDFPRDFEPRWNEIFL
Subjt:  IGERNVKNEFGFKWGLKTKVVKEKGYQFYESFLCNGLEYFLYDCVYIYHRGDCETTIGRLVKMFETRAHERKVKVVRFMRPIELRDFPRDFEPRWNEIFL

Query:  ASGESAGVSKCYLLEEVIRKCNVVCTLKDGRNPQPSDAELNSADYIFYRTYDVKKCMILEDFPDEI
        ASGESAGVSKCYLLEEVIRKCNVVCTLKDGRNPQPSDAELNSADYIFYRTYDVKKCMILEDFPDEI
Subjt:  ASGESAGVSKCYLLEEVIRKCNVVCTLKDGRNPQPSDAELNSADYIFYRTYDVKKCMILEDFPDEI

A0A6J1DL02 protein ANTI-SILENCING 1 isoform X31.0e-9398.8Show/hide
Query:  IGERNVKNEFGFKWGLKTKVVKEKGYQFYESFLCNGLEYFLYDCVYIYHRGDCETTIGRLVKMFETRAHERKVKVVRFMRPIELRDFPRDFEPRWNEIFL
        +GERNVKNEFGFKWGLKTKVVKEKGYQFYESFLCNGLEYFLYDCVYIYHRGDCETTIGRLVKMFETRAHE+KVKVVRFMRPIELRDFPRDFEPRWNEIFL
Subjt:  IGERNVKNEFGFKWGLKTKVVKEKGYQFYESFLCNGLEYFLYDCVYIYHRGDCETTIGRLVKMFETRAHERKVKVVRFMRPIELRDFPRDFEPRWNEIFL

Query:  ASGESAGVSKCYLLEEVIRKCNVVCTLKDGRNPQPSDAELNSADYIFYRTYDVKKCMILEDFPDEI
        ASGESAGVSKCYLLEEVIRKCNVVCTLKDGRNPQPSDAELNSADYIFYRTYDVKKCMILEDFPDEI
Subjt:  ASGESAGVSKCYLLEEVIRKCNVVCTLKDGRNPQPSDAELNSADYIFYRTYDVKKCMILEDFPDEI

SwissProt top hitse value%identityAlignment
Q9LYE3 Protein ANTI-SILENCING 11.2e-2741.28Show/hide
Query:  ERNVKNE-FGFKWGLKTKV-VKEKGYQFYESFLCNGLEYFLYDCVYIYHRGDCETT---IGRLVKMFE--TRAHERKVKVVRFMRPIELRDFPRDF-EPR
        E +V +E   FKWG K  V  K+K  QFYESF  +G EY LYDCV + +  + ++T   IG ++K++E   +   +KVK++ F +P E+  +        
Subjt:  ERNVKNE-FGFKWGLKTKV-VKEKGYQFYESFLCNGLEYFLYDCVYIYHRGDCETT---IGRLVKMFE--TRAHERKVKVVRFMRPIELRDFPRDF-EPR

Query:  WNEIFLASGESAGVSKCYLLEEVIRKCNVVCTLKDGRNPQPSDAELNSADYIFYRTYDVKKCMILEDFPDEI
         NE+FLASGE  G++    LE +  KC+V+C  KD RNPQPSD + NSAD++F R +DV  C +++   D+I
Subjt:  WNEIFLASGESAGVSKCYLLEEVIRKCNVVCTLKDGRNPQPSDAELNSADYIFYRTYDVKKCMILEDFPDEI

Arabidopsis top hitse value%identityAlignment
AT3G15605.1 nucleic acid binding4.4e-0957.45Show/hide
Query:  KCNVVCTLKDGRNPQPSDAELNSADYIFYRTYDVKKCMILEDFPDEI
        KCNVVCT  D RNP+P   EL  A YIF RT+D +  +I EDF D I
Subjt:  KCNVVCTLKDGRNPQPSDAELNSADYIFYRTYDVKKCMILEDFPDEI

AT3G15605.2 nucleic acid binding4.4e-0957.45Show/hide
Query:  KCNVVCTLKDGRNPQPSDAELNSADYIFYRTYDVKKCMILEDFPDEI
        KCNVVCT  D RNP+P   EL  A YIF RT+D +  +I EDF D I
Subjt:  KCNVVCTLKDGRNPQPSDAELNSADYIFYRTYDVKKCMILEDFPDEI

AT3G15605.3 nucleic acid binding4.4e-0957.45Show/hide
Query:  KCNVVCTLKDGRNPQPSDAELNSADYIFYRTYDVKKCMILEDFPDEI
        KCNVVCT  D RNP+P   EL  A YIF RT+D +  +I EDF D I
Subjt:  KCNVVCTLKDGRNPQPSDAELNSADYIFYRTYDVKKCMILEDFPDEI

AT3G15605.4 nucleic acid binding8.3e-2438.46Show/hide
Query:  FKWGLKTKV-VKEKGYQFYESFLCNGLEYFLYDCVYIYHRGDCETTIGRLVKMFETRAHERKVKVVRFMRPIELRDFPRDFEPRWNEIFLASGESAGVSK
        FKWG K  V  K+   +FYESF   G+EY L+DC Y Y                                      F  ++EP+W+E+FLA G+  GVS 
Subjt:  FKWGLKTKV-VKEKGYQFYESFLCNGLEYFLYDCVYIYHRGDCETTIGRLVKMFETRAHERKVKVVRFMRPIELRDFPRDFEPRWNEIFLASGESAGVSK

Query:  CYLLEEVIRKCNVVCTLKDGRNPQPSDAELNSADYIFYRTYDVKKCMILEDFPDEI
           +E ++ KCNVVCT  D RNP+P   EL  A YIF RT+D +  +I EDF D I
Subjt:  CYLLEEVIRKCNVVCTLKDGRNPQPSDAELNSADYIFYRTYDVKKCMILEDFPDEI

AT5G11470.1 bromo-adjacent homology (BAH) domain-containing protein8.5e-2941.28Show/hide
Query:  ERNVKNE-FGFKWGLKTKV-VKEKGYQFYESFLCNGLEYFLYDCVYIYHRGDCETT---IGRLVKMFE--TRAHERKVKVVRFMRPIELRDFPRDF-EPR
        E +V +E   FKWG K  V  K+K  QFYESF  +G EY LYDCV + +  + ++T   IG ++K++E   +   +KVK++ F +P E+  +        
Subjt:  ERNVKNE-FGFKWGLKTKV-VKEKGYQFYESFLCNGLEYFLYDCVYIYHRGDCETT---IGRLVKMFE--TRAHERKVKVVRFMRPIELRDFPRDF-EPR

Query:  WNEIFLASGESAGVSKCYLLEEVIRKCNVVCTLKDGRNPQPSDAELNSADYIFYRTYDVKKCMILEDFPDEI
         NE+FLASGE  G++    LE +  KC+V+C  KD RNPQPSD + NSAD++F R +DV  C +++   D+I
Subjt:  WNEIFLASGESAGVSKCYLLEEVIRKCNVVCTLKDGRNPQPSDAELNSADYIFYRTYDVKKCMILEDFPDEI


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATTGGAGAAAGGAATGTGAAAAATGAATTTGGATTCAAGTGGGGCTTGAAGACTAAAGTTGTAAAGGAGAAGGGGTATCAGTTCTACGAATCATTTTTATGCAATGGGTT
GGAATACTTTCTTTATGATTGTGTGTACATTTACCACAGAGGTGACTGTGAAACCACCATAGGCAGGCTTGTGAAAATGTTTGAAACGAGAGCTCACGAACGGAAGGTCA
AGGTGGTGCGTTTTATGCGTCCAATTGAACTACGTGATTTTCCGAGAGATTTTGAGCCACGTTGGAATGAGATATTCTTGGCTTCTGGCGAGAGTGCTGGTGTTTCCAAA
TGTTATCTTTTGGAAGAAGTTATTAGAAAATGCAATGTTGTTTGCACCCTCAAGGATGGGAGAAATCCTCAGCCATCCGACGCGGAGTTGAATTCGGCAGATTATATTTT
CTACCGTACTTATGATGTTAAAAAATGCATGATCCTAGAGGACTTTCCAGATGAAATT
mRNA sequenceShow/hide mRNA sequence
ATTGGAGAAAGGAATGTGAAAAATGAATTTGGATTCAAGTGGGGCTTGAAGACTAAAGTTGTAAAGGAGAAGGGGTATCAGTTCTACGAATCATTTTTATGCAATGGGTT
GGAATACTTTCTTTATGATTGTGTGTACATTTACCACAGAGGTGACTGTGAAACCACCATAGGCAGGCTTGTGAAAATGTTTGAAACGAGAGCTCACGAACGGAAGGTCA
AGGTGGTGCGTTTTATGCGTCCAATTGAACTACGTGATTTTCCGAGAGATTTTGAGCCACGTTGGAATGAGATATTCTTGGCTTCTGGCGAGAGTGCTGGTGTTTCCAAA
TGTTATCTTTTGGAAGAAGTTATTAGAAAATGCAATGTTGTTTGCACCCTCAAGGATGGGAGAAATCCTCAGCCATCCGACGCGGAGTTGAATTCGGCAGATTATATTTT
CTACCGTACTTATGATGTTAAAAAATGCATGATCCTAGAGGACTTTCCAGATGAAATT
Protein sequenceShow/hide protein sequence
IGERNVKNEFGFKWGLKTKVVKEKGYQFYESFLCNGLEYFLYDCVYIYHRGDCETTIGRLVKMFETRAHERKVKVVRFMRPIELRDFPRDFEPRWNEIFLASGESAGVSK
CYLLEEVIRKCNVVCTLKDGRNPQPSDAELNSADYIFYRTYDVKKCMILEDFPDEI