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MS013112 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS013112
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionAuxin-responsive protein
Genome locationscaffold459:308128..308406
RNA-Seq ExpressionMS013112
SyntenyMS013112
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0009734 - auxin-activated signaling pathway (biological process)
GO:0005634 - nucleus (cellular component)
GO:0005515 - protein binding (molecular function)
InterPro domainsIPR000270 - PB1 domain
IPR003311 - AUX/IAA protein
IPR033389 - AUX/IAA domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
NP_001275532.1 auxin-induced protein AUX22-like [Cucumis sativus]1.2e-2969.31Show/hide
Query:  QVVGWPPVRSYRRRNSFR---EKDESETTTKMS-----YVKVSLDGVPFLRKLDLVTVAGYADLGGAMEKLFGCSIGCSKYTMTYEDRDGDWMLVGDVPW
        QVVGWPPV SYRRRNSF+   E+ ESE    M      YVKVS +G PFLRK+DL  V GY DL GAMEKLFG  IGC +YT+TYEDRDGDWMLVGDVPW
Subjt:  QVVGWPPVRSYRRRNSFR---EKDESETTTKMS-----YVKVSLDGVPFLRKLDLVTVAGYADLGGAMEKLFGCSIGCSKYTMTYEDRDGDWMLVGDVPW

Query:  K
        K
Subjt:  K

XP_008447487.1 PREDICTED: auxin-induced protein AUX22-like [Cucumis melo]2.0e-2967Show/hide
Query:  QVVGWPPVRSYRRRNSFREKDESET-------TTKMSYVKVSLDGVPFLRKLDLVTVAGYADLGGAMEKLFGCSIGCSKYTMTYEDRDGDWMLVGDVPWK
        QVVGWPPV SYR+R+SF+ K E E+         K  YVKVS +G PFLRK+DL  V GY DL GAMEKLFG  IGC +YT+TYEDRDGDWMLVGDVPWK
Subjt:  QVVGWPPVRSYRRRNSFREKDESET-------TTKMSYVKVSLDGVPFLRKLDLVTVAGYADLGGAMEKLFGCSIGCSKYTMTYEDRDGDWMLVGDVPWK

XP_022153621.1 auxin-induced protein 22A-like [Momordica charantia]2.8e-4798.92Show/hide
Query:  QVVGWPPVRSYRRRNSFREKDESETTTKMSYVKVSLDGVPFLRKLDLVTVAGYADLGGAMEKLFGCSIGCSKYTMTYEDRDGDWMLVGDVPWK
        QVVGWPPVRSYRRRNSFREKDESETTTKMSYVKVSLDGVPFLRKLDLVTVAGYADLGGAMEKLFGCSIGCSKYT+TYEDRDGDWMLVGDVPWK
Subjt:  QVVGWPPVRSYRRRNSFREKDESETTTKMSYVKVSLDGVPFLRKLDLVTVAGYADLGGAMEKLFGCSIGCSKYTMTYEDRDGDWMLVGDVPWK

XP_023525675.1 auxin-induced protein AUX22-like [Cucurbita pepo subsp. pepo]2.2e-2868.75Show/hide
Query:  QVVGWPPVRSYRRRNSFREKDESETT---TKMSYVKVSLDGVPFLRKLDLVTVAGYADLGGAMEKLFGCSIGCSKYTMTYEDRDGDWMLVGDVPWK
        QVVGWPPV SYRRRNSFREK+E E      K  YVKV ++G  F+RK+DL  V GY +L  AMEKLFG  IGCS+ T+TYEDRDGDWMLVGDVPWK
Subjt:  QVVGWPPVRSYRRRNSFREKDESETT---TKMSYVKVSLDGVPFLRKLDLVTVAGYADLGGAMEKLFGCSIGCSKYTMTYEDRDGDWMLVGDVPWK

XP_038903795.1 auxin-induced protein AUX22-like [Benincasa hispida]1.3e-2867Show/hide
Query:  QVVGWPPVRSYRRRNSFREKDESETT-------TKMSYVKVSLDGVPFLRKLDLVTVAGYADLGGAMEKLFGCSIGCSKYTMTYEDRDGDWMLVGDVPWK
        QVVGWPPV SYR+RNSF+ K E + +        K  YVKVS +G PFLRK+DL  V GY DL  AMEKLFG SIG S+YT+TYEDRDGDWMLVGDVPWK
Subjt:  QVVGWPPVRSYRRRNSFREKDESETT-------TKMSYVKVSLDGVPFLRKLDLVTVAGYADLGGAMEKLFGCSIGCSKYTMTYEDRDGDWMLVGDVPWK

TrEMBL top hitse value%identityAlignment
A0A1S3BHJ0 Auxin-responsive protein9.8e-3067Show/hide
Query:  QVVGWPPVRSYRRRNSFREKDESET-------TTKMSYVKVSLDGVPFLRKLDLVTVAGYADLGGAMEKLFGCSIGCSKYTMTYEDRDGDWMLVGDVPWK
        QVVGWPPV SYR+R+SF+ K E E+         K  YVKVS +G PFLRK+DL  V GY DL GAMEKLFG  IGC +YT+TYEDRDGDWMLVGDVPWK
Subjt:  QVVGWPPVRSYRRRNSFREKDESET-------TTKMSYVKVSLDGVPFLRKLDLVTVAGYADLGGAMEKLFGCSIGCSKYTMTYEDRDGDWMLVGDVPWK

A0A5D3DA37 Auxin-responsive protein9.8e-3067Show/hide
Query:  QVVGWPPVRSYRRRNSFREKDESET-------TTKMSYVKVSLDGVPFLRKLDLVTVAGYADLGGAMEKLFGCSIGCSKYTMTYEDRDGDWMLVGDVPWK
        QVVGWPPV SYR+R+SF+ K E E+         K  YVKVS +G PFLRK+DL  V GY DL GAMEKLFG  IGC +YT+TYEDRDGDWMLVGDVPWK
Subjt:  QVVGWPPVRSYRRRNSFREKDESET-------TTKMSYVKVSLDGVPFLRKLDLVTVAGYADLGGAMEKLFGCSIGCSKYTMTYEDRDGDWMLVGDVPWK

A0A6J1DL62 Auxin-responsive protein1.4e-4798.92Show/hide
Query:  QVVGWPPVRSYRRRNSFREKDESETTTKMSYVKVSLDGVPFLRKLDLVTVAGYADLGGAMEKLFGCSIGCSKYTMTYEDRDGDWMLVGDVPWK
        QVVGWPPVRSYRRRNSFREKDESETTTKMSYVKVSLDGVPFLRKLDLVTVAGYADLGGAMEKLFGCSIGCSKYT+TYEDRDGDWMLVGDVPWK
Subjt:  QVVGWPPVRSYRRRNSFREKDESETTTKMSYVKVSLDGVPFLRKLDLVTVAGYADLGGAMEKLFGCSIGCSKYTMTYEDRDGDWMLVGDVPWK

A0A6J1KCT2 Auxin-responsive protein1.4e-2868.75Show/hide
Query:  QVVGWPPVRSYRRRNSFREKDESE---TTTKMSYVKVSLDGVPFLRKLDLVTVAGYADLGGAMEKLFGCSIGCSKYTMTYEDRDGDWMLVGDVPWK
        QVVGWPPV SYRRRNS REK+ESE      K  YVKV ++G  F+RK+DL  V GY +L  AMEKLFG  IGCS+ T+TYEDRDGDWMLVGDVPWK
Subjt:  QVVGWPPVRSYRRRNSFREKDESE---TTTKMSYVKVSLDGVPFLRKLDLVTVAGYADLGGAMEKLFGCSIGCSKYTMTYEDRDGDWMLVGDVPWK

Q9SSY3 Auxin-responsive protein5.7e-3069.31Show/hide
Query:  QVVGWPPVRSYRRRNSFR---EKDESETTTKMS-----YVKVSLDGVPFLRKLDLVTVAGYADLGGAMEKLFGCSIGCSKYTMTYEDRDGDWMLVGDVPW
        QVVGWPPV SYRRRNSF+   E+ ESE    M      YVKVS +G PFLRK+DL  V GY DL GAMEKLFG  IGC +YT+TYEDRDGDWMLVGDVPW
Subjt:  QVVGWPPVRSYRRRNSFR---EKDESETTTKMS-----YVKVSLDGVPFLRKLDLVTVAGYADLGGAMEKLFGCSIGCSKYTMTYEDRDGDWMLVGDVPW

Query:  K
        K
Subjt:  K

SwissProt top hitse value%identityAlignment
O24409 Auxin-responsive protein IAA191.3e-2356Show/hide
Query:  QVVGWPPVRSYRRRNSFREKDESETTTKMSYVKVSLDGVPFLRKLDLVTVAGYADLGGAMEKLFGC-SIGCS-------KYTMTYEDRDGDWMLVGDVPW
        QVVGWPPV SYR++NS   K+ S T   + YVKVS+DGVP+LRK+DL +  GY DL  A++KLFG   IG +       +Y   YED+DGDWML GDVPW
Subjt:  QVVGWPPVRSYRRRNSFREKDESETTTKMSYVKVSLDGVPFLRKLDLVTVAGYADLGGAMEKLFGC-SIGCS-------KYTMTYEDRDGDWMLVGDVPW

O24542 Auxin-induced protein 22D1.1e-2251.49Show/hide
Query:  QVVGWPPVRSYRRRNSFREKDESETTTKMSYVKVSLDGVPFLRKLDLVTVAGYADLGGAMEKLFGCSIG---------CSKYTMTYEDRDGDWMLVGDVP
        QVVGWPP+RSY R+N+ ++K E E+     YVKVS+ G P+LRK+DL     Y +L  A+E +F C  G          S+Y  TYED+DGDWMLVGDVP
Subjt:  QVVGWPPVRSYRRRNSFREKDESETTTKMSYVKVSLDGVPFLRKLDLVTVAGYADLGGAMEKLFGCSIG---------CSKYTMTYEDRDGDWMLVGDVP

Query:  W
        W
Subjt:  W

P13088 Auxin-induced protein AUX221.7e-2355.45Show/hide
Query:  QVVGWPPVRSYRRRNSFREKDESETTTKMSYVKVSLDGVPFLRKLDLVTVAGYADLGGAMEKLFGC--------SIGCSKYTMTYEDRDGDWMLVGDVPW
        QVVGWPPV SYR++NS      +E  +KM YVKVS+DG PFLRK+DL    GY+DL  A++KLFGC        +   S++   YED+DGDWMLVGDVPW
Subjt:  QVVGWPPVRSYRRRNSFREKDESETTTKMSYVKVSLDGVPFLRKLDLVTVAGYADLGGAMEKLFGC--------SIGCSKYTMTYEDRDGDWMLVGDVPW

Query:  K
        +
Subjt:  K

P32293 Auxin-induced protein 22A1.3e-2355.45Show/hide
Query:  QVVGWPPVRSYRRRNSFREKDESETTTKMSYVKVSLDGVPFLRKLDLVTVAGYADLGGAMEKLFGC--------SIGCSKYTMTYEDRDGDWMLVGDVPW
        QVVGWPPV SYR++NS  E       +KM YVKVS+DG PFLRK+DL    GY+DL  A+EKLFGC        ++   ++   YED+DGDWMLVGDVPW
Subjt:  QVVGWPPVRSYRRRNSFREKDESETTTKMSYVKVSLDGVPFLRKLDLVTVAGYADLGGAMEKLFGC--------SIGCSKYTMTYEDRDGDWMLVGDVPW

Query:  K
        +
Subjt:  K

Q38822 Auxin-responsive protein IAA34.5e-2451.96Show/hide
Query:  QVVGWPPVRSYRRRNSFREKDESETTTKMSYVKVSLDGVPFLRKLDLVTVAGYADLGGAMEKLFGCSIG---------CSKYTMTYEDRDGDWMLVGDVP
        Q+VGWPPVRSYR+ N   +K+ESE   +  YVKVS+DG P+LRK+DL    GY++L  A+E +F  S+G          S +  TYED+DGDWML+GDVP
Subjt:  QVVGWPPVRSYRRRNSFREKDESETTTKMSYVKVSLDGVPFLRKLDLVTVAGYADLGGAMEKLFGCSIG---------CSKYTMTYEDRDGDWMLVGDVP

Query:  WK
        W+
Subjt:  WK

Arabidopsis top hitse value%identityAlignment
AT1G04240.1 AUX/IAA transcriptional regulator family protein3.2e-2551.96Show/hide
Query:  QVVGWPPVRSYRRRNSFREKDESETTTKMSYVKVSLDGVPFLRKLDLVTVAGYADLGGAMEKLFGCSIG---------CSKYTMTYEDRDGDWMLVGDVP
        Q+VGWPPVRSYR+ N   +K+ESE   +  YVKVS+DG P+LRK+DL    GY++L  A+E +F  S+G          S +  TYED+DGDWML+GDVP
Subjt:  QVVGWPPVRSYRRRNSFREKDESETTTKMSYVKVSLDGVPFLRKLDLVTVAGYADLGGAMEKLFGCSIG---------CSKYTMTYEDRDGDWMLVGDVP

Query:  WK
        W+
Subjt:  WK

AT1G15580.1 indole-3-acetic acid inducible 53.9e-2354.55Show/hide
Query:  QVVGWPPVRSYRRRNSFREKDESETTTKMSYVKVSLDGVPFLRKLDLVTVAGYADLGGAMEKLFGCSIGC------SKYTMTYEDRDGDWMLVGDVPWK
        QVVGWPPV SYRR+NS          TK SYVKVS+DG  FLRK+DL     Y DL  A++ LFGC I        S+    YED+DGDWML GDVPW+
Subjt:  QVVGWPPVRSYRRRNSFREKDESETTTKMSYVKVSLDGVPFLRKLDLVTVAGYADLGGAMEKLFGCSIGC------SKYTMTYEDRDGDWMLVGDVPWK

AT1G52830.1 indole-3-acetic acid 62.5e-2251Show/hide
Query:  QVVGWPPVRSYRRRNSFREKDESETTTKMSYVKVSLDGVPFLRKLDLVTVAGYADLGGAMEKLFGC-SIGCSK------YTMTYEDRDGDWMLVGDVPWK
        Q VGWPPV SYRR+     K+  E +  + YVKVS+DGVP++RK+DL +   Y +L   +E LFGC  IG +K      Y + YED+D DWMLVGDVPW+
Subjt:  QVVGWPPVRSYRRRNSFREKDESETTTKMSYVKVSLDGVPFLRKLDLVTVAGYADLGGAMEKLFGC-SIGCSK------YTMTYEDRDGDWMLVGDVPWK

AT3G15540.1 indole-3-acetic acid inducible 199.3e-2556Show/hide
Query:  QVVGWPPVRSYRRRNSFREKDESETTTKMSYVKVSLDGVPFLRKLDLVTVAGYADLGGAMEKLFGC-SIGCS-------KYTMTYEDRDGDWMLVGDVPW
        QVVGWPPV SYR++NS   K+ S T   + YVKVS+DGVP+LRK+DL +  GY DL  A++KLFG   IG +       +Y   YED+DGDWML GDVPW
Subjt:  QVVGWPPVRSYRRRNSFREKDESETTTKMSYVKVSLDGVPFLRKLDLVTVAGYADLGGAMEKLFGC-SIGCS-------KYTMTYEDRDGDWMLVGDVPW

AT5G43700.1 AUX/IAA transcriptional regulator family protein1.8e-2350.98Show/hide
Query:  QVVGWPPVRSYRRRNSFREKDESETTTKMSYVKVSLDGVPFLRKLDLVTVAGYADLGGAMEKLFGCSIG---------CSKYTMTYEDRDGDWMLVGDVP
        Q+VGWPPVRSYR+ N   +K ESE   + +YVKVS+DG P+LRK+DL     Y +L  ++E +F  S+G          S +  TYED+DGDWMLVGDVP
Subjt:  QVVGWPPVRSYRRRNSFREKDESETTTKMSYVKVSLDGVPFLRKLDLVTVAGYADLGGAMEKLFGCSIG---------CSKYTMTYEDRDGDWMLVGDVP

Query:  WK
        W+
Subjt:  WK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
CAGGTGGTGGGTTGGCCACCGGTTCGCTCGTACCGGCGGAGGAACAGTTTTAGGGAGAAGGATGAATCTGAAACAACGACGAAGATGTCGTACGTGAAAGTAAGCTTGGA
CGGAGTGCCATTTCTTCGGAAACTTGATTTGGTAACGGTGGCGGGGTACGCCGATCTCGGCGGGGCGATGGAGAAGCTCTTTGGTTGCTCCATTGGATGCTCTAAATATA
CTATGACTTATGAAGATAGAGATGGAGATTGGATGTTGGTTGGGGACGTCCCTTGGAAG
mRNA sequenceShow/hide mRNA sequence
CAGGTGGTGGGTTGGCCACCGGTTCGCTCGTACCGGCGGAGGAACAGTTTTAGGGAGAAGGATGAATCTGAAACAACGACGAAGATGTCGTACGTGAAAGTAAGCTTGGA
CGGAGTGCCATTTCTTCGGAAACTTGATTTGGTAACGGTGGCGGGGTACGCCGATCTCGGCGGGGCGATGGAGAAGCTCTTTGGTTGCTCCATTGGATGCTCTAAATATA
CTATGACTTATGAAGATAGAGATGGAGATTGGATGTTGGTTGGGGACGTCCCTTGGAAG
Protein sequenceShow/hide protein sequence
QVVGWPPVRSYRRRNSFREKDESETTTKMSYVKVSLDGVPFLRKLDLVTVAGYADLGGAMEKLFGCSIGCSKYTMTYEDRDGDWMLVGDVPWK