; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MS013131 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS013131
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Descriptionphotosystem I reaction center subunit VI, chloroplastic-like
Genome locationscaffold459:418694..419540
RNA-Seq ExpressionMS013131
SyntenyMS013131
Gene Ontology termsGO:0015979 - photosynthesis (biological process)
GO:0009535 - chloroplast thylakoid membrane (cellular component)
GO:0009538 - photosystem I reaction center (cellular component)
GO:0016021 - integral component of membrane (cellular component)
InterPro domainsIPR004928 - Photosystem I PsaH, reaction centre subunit VI


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6581890.1 Photosystem I reaction center subunit VI, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia]8.1e-7093.75Show/hide
Query:  MASLATLAAVQPVAVKGLAGSSIAGTRLPLKPSRQSFRPKNFRAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRG
        MASLATLAAVQPV VKGL GSS+AGT+LPL+P+RQSFRPK+F+AGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRG
Subjt:  MASLATLAAVQPVAVKGLAGSSIAGTRLPLKPSRQSFRPKNFRAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRG

Query:  LLLKFLLLGGGATLAYFSATAPDDVLPIKKGPQLPPKLGPRGKI
        LLLKFLLLGGGATLAY+SATAPDDVLPIKKGPQLPPKLGPRGKI
Subjt:  LLLKFLLLGGGATLAYFSATAPDDVLPIKKGPQLPPKLGPRGKI

KAG7018324.1 Photosystem I reaction center subunit VI, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma]8.1e-7093.75Show/hide
Query:  MASLATLAAVQPVAVKGLAGSSIAGTRLPLKPSRQSFRPKNFRAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRG
        MASLATLAAVQPV VKGL GSS+AGT+LPL+P+RQSFRPK+F+AGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRG
Subjt:  MASLATLAAVQPVAVKGLAGSSIAGTRLPLKPSRQSFRPKNFRAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRG

Query:  LLLKFLLLGGGATLAYFSATAPDDVLPIKKGPQLPPKLGPRGKI
        LLLKFLLLGGGATLAY+SATAPDDVLPIKKGPQLPPKLGPRGKI
Subjt:  LLLKFLLLGGGATLAYFSATAPDDVLPIKKGPQLPPKLGPRGKI

XP_011651500.1 photosystem I reaction center subunit VI, chloroplastic [Cucumis sativus]3.6e-7094.44Show/hide
Query:  MASLATLAAVQPVAVKGLAGSSIAGTRLPLKPSRQSFRPKNFRAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRG
        MASLATLAAVQPV VKGL GSS+AG +LPL+PSRQ+FRPKNF+AGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRG
Subjt:  MASLATLAAVQPVAVKGLAGSSIAGTRLPLKPSRQSFRPKNFRAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRG

Query:  LLLKFLLLGGGATLAYFSATAPDDVLPIKKGPQLPPKLGPRGKI
        LLLKFLLLGGGATLAYFSATAPDDVLPIKKGPQLPPKLGPRGKI
Subjt:  LLLKFLLLGGGATLAYFSATAPDDVLPIKKGPQLPPKLGPRGKI

XP_022153665.1 photosystem I reaction center subunit VI, chloroplastic-like [Momordica charantia]2.7e-73100Show/hide
Query:  MASLATLAAVQPVAVKGLAGSSIAGTRLPLKPSRQSFRPKNFRAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRG
        MASLATLAAVQPVAVKGLAGSSIAGTRLPLKPSRQSFRPKNFRAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRG
Subjt:  MASLATLAAVQPVAVKGLAGSSIAGTRLPLKPSRQSFRPKNFRAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRG

Query:  LLLKFLLLGGGATLAYFSATAPDDVLPIKKGPQLPPKLGPRGKI
        LLLKFLLLGGGATLAYFSATAPDDVLPIKKGPQLPPKLGPRGKI
Subjt:  LLLKFLLLGGGATLAYFSATAPDDVLPIKKGPQLPPKLGPRGKI

XP_022955723.1 photosystem I reaction center subunit VI, chloroplastic-like [Cucurbita moschata]3.6e-7094.44Show/hide
Query:  MASLATLAAVQPVAVKGLAGSSIAGTRLPLKPSRQSFRPKNFRAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRG
        MASLATLAAVQPV VKGL GSS+AGT+LPL+PSRQSFRPK+F+AGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRG
Subjt:  MASLATLAAVQPVAVKGLAGSSIAGTRLPLKPSRQSFRPKNFRAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRG

Query:  LLLKFLLLGGGATLAYFSATAPDDVLPIKKGPQLPPKLGPRGKI
        LLLKFLLLGGGATLAY+SATAPDDVLPIKKGPQLPPKLGPRGKI
Subjt:  LLLKFLLLGGGATLAYFSATAPDDVLPIKKGPQLPPKLGPRGKI

TrEMBL top hitse value%identityAlignment
A0A0A0LAW4 Uncharacterized protein1.8e-7094.44Show/hide
Query:  MASLATLAAVQPVAVKGLAGSSIAGTRLPLKPSRQSFRPKNFRAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRG
        MASLATLAAVQPV VKGL GSS+AG +LPL+PSRQ+FRPKNF+AGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRG
Subjt:  MASLATLAAVQPVAVKGLAGSSIAGTRLPLKPSRQSFRPKNFRAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRG

Query:  LLLKFLLLGGGATLAYFSATAPDDVLPIKKGPQLPPKLGPRGKI
        LLLKFLLLGGGATLAYFSATAPDDVLPIKKGPQLPPKLGPRGKI
Subjt:  LLLKFLLLGGGATLAYFSATAPDDVLPIKKGPQLPPKLGPRGKI

A0A5D3C9C3 Photosystem I reaction center subunit VI5.1e-7093.75Show/hide
Query:  MASLATLAAVQPVAVKGLAGSSIAGTRLPLKPSRQSFRPKNFRAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRG
        MASLATLAAVQP  VKGL GSS+AG +LPL+PSRQSFRPKNF+AGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRG
Subjt:  MASLATLAAVQPVAVKGLAGSSIAGTRLPLKPSRQSFRPKNFRAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRG

Query:  LLLKFLLLGGGATLAYFSATAPDDVLPIKKGPQLPPKLGPRGKI
        LLLKFLLLGGGATLAY+SATAPDDVLPIKKGPQLPPKLGPRGKI
Subjt:  LLLKFLLLGGGATLAYFSATAPDDVLPIKKGPQLPPKLGPRGKI

A0A6J1DHG2 photosystem I reaction center subunit VI, chloroplastic-like1.3e-73100Show/hide
Query:  MASLATLAAVQPVAVKGLAGSSIAGTRLPLKPSRQSFRPKNFRAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRG
        MASLATLAAVQPVAVKGLAGSSIAGTRLPLKPSRQSFRPKNFRAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRG
Subjt:  MASLATLAAVQPVAVKGLAGSSIAGTRLPLKPSRQSFRPKNFRAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRG

Query:  LLLKFLLLGGGATLAYFSATAPDDVLPIKKGPQLPPKLGPRGKI
        LLLKFLLLGGGATLAYFSATAPDDVLPIKKGPQLPPKLGPRGKI
Subjt:  LLLKFLLLGGGATLAYFSATAPDDVLPIKKGPQLPPKLGPRGKI

A0A6J1GUS6 photosystem I reaction center subunit VI, chloroplastic-like1.8e-7094.44Show/hide
Query:  MASLATLAAVQPVAVKGLAGSSIAGTRLPLKPSRQSFRPKNFRAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRG
        MASLATLAAVQPV VKGL GSS+AGT+LPL+PSRQSFRPK+F+AGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRG
Subjt:  MASLATLAAVQPVAVKGLAGSSIAGTRLPLKPSRQSFRPKNFRAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRG

Query:  LLLKFLLLGGGATLAYFSATAPDDVLPIKKGPQLPPKLGPRGKI
        LLLKFLLLGGGATLAY+SATAPDDVLPIKKGPQLPPKLGPRGKI
Subjt:  LLLKFLLLGGGATLAYFSATAPDDVLPIKKGPQLPPKLGPRGKI

A0A6J1IVS0 photosystem I reaction center subunit VI, chloroplastic-like1.8e-7094.44Show/hide
Query:  MASLATLAAVQPVAVKGLAGSSIAGTRLPLKPSRQSFRPKNFRAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRG
        MASLATLAAVQPV VKGL GSS+AGT+LPL+PSRQSFRPK+F+AGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRG
Subjt:  MASLATLAAVQPVAVKGLAGSSIAGTRLPLKPSRQSFRPKNFRAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRG

Query:  LLLKFLLLGGGATLAYFSATAPDDVLPIKKGPQLPPKLGPRGKI
        LLLKFLLLGGGATLAY+SATAPDDVLPIKKGPQLPPKLGPRGKI
Subjt:  LLLKFLLLGGGATLAYFSATAPDDVLPIKKGPQLPPKLGPRGKI

SwissProt top hitse value%identityAlignment
A2Y7D9 Photosystem I reaction center subunit VI, chloroplastic1.9e-5376.06Show/hide
Query:  LATLAAVQPVAVKGLAGSSIAGTRLPLKPS-RQSFRPKNFRAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRGLL
        +A+L AVQPVAVKGLAGSSI+G +L ++PS R   R       AVVAKYG+KSVYFDLED+GNTTGQWDLYGSDAPSPYN LQSKFFETFA PFTKRGLL
Subjt:  LATLAAVQPVAVKGLAGSSIAGTRLPLKPS-RQSFRPKNFRAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRGLL

Query:  LKFLLLGGGATLAYFSATAPDDVLPIKKGPQLPPKLGPRGKI
        LKFLLLGGG+ +AY SA+A  D+LPIKKGPQLPP  GPRGKI
Subjt:  LKFLLLGGGATLAYFSATAPDDVLPIKKGPQLPPKLGPRGKI

O04006 Photosystem I reaction center subunit VI, chloroplastic4.6e-6080.69Show/hide
Query:  MASLATLAAVQPV-AVKGLAGSSIAGTRLPLKPSRQSFRPKNFRAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKR
        MAS AT+AAVQP  AVKGL GSS+ G +L +KPSRQSF+PK+ RAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYN LQSKFFETFAAPFTKR
Subjt:  MASLATLAAVQPV-AVKGLAGSSIAGTRLPLKPSRQSFRPKNFRAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKR

Query:  GLLLKFLLLGGGATLAYFSATAPDDVLPIKKGPQLPPKLGPRGKI
        GLLLKFL+LGGG+ L Y SA++  DVLPIK+GPQ  PKLGPRGK+
Subjt:  GLLLKFLLLGGGATLAYFSATAPDDVLPIKKGPQLPPKLGPRGKI

P22179 Photosystem I reaction center subunit VI, chloroplastic1.0e-6281.94Show/hide
Query:  MASLATLAAVQPVAVKGLAGSSIAGTRLPLKPSRQSFRPKNFRAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRG
        MASLATLAAVQP  +KGLAGSSIAGT+L +KP+RQSF+  N R+GA+VAKYGDKSVYFDLED+ NTTGQWD+YGSDAPSPYNSLQSKFFETFAAPFTKRG
Subjt:  MASLATLAAVQPVAVKGLAGSSIAGTRLPLKPSRQSFRPKNFRAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRG

Query:  LLLKFLLLGGGATLAYFSATAPDDVLPIKKGPQLPPKLGPRGKI
        LLLKFL+LGGG+ L Y SA AP DVLPI +GPQ PPKLGPRGKI
Subjt:  LLLKFLLLGGGATLAYFSATAPDDVLPIKKGPQLPPKLGPRGKI

Q9SUI6 Photosystem I reaction center subunit VI-2, chloroplastic3.5e-6080.69Show/hide
Query:  MASLATLAAVQP-VAVKGLAGSSIAGTRLPLKPSRQSFRPKNFRAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKR
        MAS AT+AAVQP  AVKGL GSS+AG +L +KPSRQSF+ K+ RAGAVVAKYGDKSVYFDLEDLGNTTGQWD+YGSDAPSPYN LQSKFFETFAAPFTKR
Subjt:  MASLATLAAVQP-VAVKGLAGSSIAGTRLPLKPSRQSFRPKNFRAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKR

Query:  GLLLKFLLLGGGATLAYFSATAPDDVLPIKKGPQLPPKLGPRGKI
        GLLLKFL+LGGG+ L Y SA +  DVLPIK+GPQ PPKLGPRGK+
Subjt:  GLLLKFLLLGGGATLAYFSATAPDDVLPIKKGPQLPPKLGPRGKI

Q9SUI7 Photosystem I reaction center subunit VI-1, chloroplastic1.3e-5978.62Show/hide
Query:  MASLATLAAVQP-VAVKGLAGSSIAGTRLPLKPSRQSFRPKNFRAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKR
        MASLAT+AAV+P  A+KGL GSS+AG +L +KPSR SF+PK+ RA  VVAKYGDKSVYFDLEDLGNTTGQWD+YGSDAPSPYN LQSKFFETFAAPFTKR
Subjt:  MASLATLAAVQP-VAVKGLAGSSIAGTRLPLKPSRQSFRPKNFRAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKR

Query:  GLLLKFLLLGGGATLAYFSATAPDDVLPIKKGPQLPPKLGPRGKI
        GLLLKFL+LGGG+ L Y SAT+  +VLPIK+GPQ PPKLGPRGK+
Subjt:  GLLLKFLLLGGGATLAYFSATAPDDVLPIKKGPQLPPKLGPRGKI

Arabidopsis top hitse value%identityAlignment
AT1G52230.1 photosystem I subunit H22.5e-6180.69Show/hide
Query:  MASLATLAAVQP-VAVKGLAGSSIAGTRLPLKPSRQSFRPKNFRAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKR
        MAS AT+AAVQP  AVKGL GSS+AG +L +KPSRQSF+ K+ RAGAVVAKYGDKSVYFDLEDLGNTTGQWD+YGSDAPSPYN LQSKFFETFAAPFTKR
Subjt:  MASLATLAAVQP-VAVKGLAGSSIAGTRLPLKPSRQSFRPKNFRAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKR

Query:  GLLLKFLLLGGGATLAYFSATAPDDVLPIKKGPQLPPKLGPRGKI
        GLLLKFL+LGGG+ L Y SA +  DVLPIK+GPQ PPKLGPRGK+
Subjt:  GLLLKFLLLGGGATLAYFSATAPDDVLPIKKGPQLPPKLGPRGKI

AT3G16140.1 photosystem I subunit H-19.6e-6178.62Show/hide
Query:  MASLATLAAVQP-VAVKGLAGSSIAGTRLPLKPSRQSFRPKNFRAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKR
        MASLAT+AAV+P  A+KGL GSS+AG +L +KPSR SF+PK+ RA  VVAKYGDKSVYFDLEDLGNTTGQWD+YGSDAPSPYN LQSKFFETFAAPFTKR
Subjt:  MASLATLAAVQP-VAVKGLAGSSIAGTRLPLKPSRQSFRPKNFRAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKR

Query:  GLLLKFLLLGGGATLAYFSATAPDDVLPIKKGPQLPPKLGPRGKI
        GLLLKFL+LGGG+ L Y SAT+  +VLPIK+GPQ PPKLGPRGK+
Subjt:  GLLLKFLLLGGGATLAYFSATAPDDVLPIKKGPQLPPKLGPRGKI


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTTCCTTAGCAACCTTAGCTGCCGTCCAGCCGGTCGCCGTAAAGGGTCTCGCCGGAAGCTCCATTGCCGGAACCAGGCTCCCCCTCAAGCCCTCTCGCCAGAGCTT
CAGACCCAAAAACTTCAGGGCTGGTGCTGTGGTGGCCAAGTACGGAGACAAAAGTGTTTACTTTGATTTGGAGGATTTGGGCAACACCACTGGACAGTGGGATTTGTATG
GATCTGATGCTCCTTCACCATACAATTCTCTTCAGAGCAAATTCTTTGAAACTTTTGCTGCTCCATTCACCAAGAGAGGATTATTGCTCAAGTTCTTGCTACTAGGTGGT
GGTGCCACTCTTGCCTATTTCAGTGCCACAGCCCCAGATGATGTTCTTCCAATCAAGAAAGGACCTCAACTCCCACCAAAACTCGGGCCGCGTGGCAAGATC
mRNA sequenceShow/hide mRNA sequence
ATGGCTTCCTTAGCAACCTTAGCTGCCGTCCAGCCGGTCGCCGTAAAGGGTCTCGCCGGAAGCTCCATTGCCGGAACCAGGCTCCCCCTCAAGCCCTCTCGCCAGAGCTT
CAGACCCAAAAACTTCAGGGCTGGTGCTGTGGTGGCCAAGTACGGAGACAAAAGTGTTTACTTTGATTTGGAGGATTTGGGCAACACCACTGGACAGTGGGATTTGTATG
GATCTGATGCTCCTTCACCATACAATTCTCTTCAGAGCAAATTCTTTGAAACTTTTGCTGCTCCATTCACCAAGAGAGGATTATTGCTCAAGTTCTTGCTACTAGGTGGT
GGTGCCACTCTTGCCTATTTCAGTGCCACAGCCCCAGATGATGTTCTTCCAATCAAGAAAGGACCTCAACTCCCACCAAAACTCGGGCCGCGTGGCAAGATC
Protein sequenceShow/hide protein sequence
MASLATLAAVQPVAVKGLAGSSIAGTRLPLKPSRQSFRPKNFRAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRGLLLKFLLLGG
GATLAYFSATAPDDVLPIKKGPQLPPKLGPRGKI