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MS013141 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS013141
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionProtein transport protein SEC13
Genome locationscaffold459:493686..493961
RNA-Seq ExpressionMS013141
SyntenyMS013141
Gene Ontology termsGO:0006606 - protein import into nucleus (biological process)
GO:0090114 - COPII-coated vesicle budding (biological process)
GO:0030127 - COPII vesicle coat (cellular component)
GO:0031080 - nuclear pore outer ring (cellular component)
GO:0005198 - structural molecule activity (molecular function)
GO:0005515 - protein binding (molecular function)
InterPro domainsIPR001680 - WD40 repeat
IPR015943 - WD40/YVTN repeat-like-containing domain superfamily
IPR036322 - WD40-repeat-containing domain superfamily
IPR037363 - Sec13/Seh1 family


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6581882.1 Protein transport protein SEC13-like B, partial [Cucurbita argyrosperma subsp. sororia]6.8e-4694.57Show/hide
Query:  DWVRDVSWAPNLGPPKSTIASASQDGKVVIWTIVREGDQWEGKVLKDFKTPVWRVSWSLTGNILAVADGNNNATLWKEAVDGDWEQVSTVEP
        DWVRDVSWAPNLG PKSTIASASQDGKVVIWT+VREGDQWEGKVLKDFKTPVWRVSWSLTGNILAVADGNNN +LWKEAVDGDW+QVSTVEP
Subjt:  DWVRDVSWAPNLGPPKSTIASASQDGKVVIWTIVREGDQWEGKVLKDFKTPVWRVSWSLTGNILAVADGNNNATLWKEAVDGDWEQVSTVEP

KAG7018318.1 Protein transport protein SEC13-like B, partial [Cucurbita argyrosperma subsp. argyrosperma]6.8e-4694.57Show/hide
Query:  DWVRDVSWAPNLGPPKSTIASASQDGKVVIWTIVREGDQWEGKVLKDFKTPVWRVSWSLTGNILAVADGNNNATLWKEAVDGDWEQVSTVEP
        DWVRDVSWAPNLG PKSTIASASQDGKVVIWT+VREGDQWEGKVLKDFKTPVWRVSWSLTGNILAVADGNNN +LWKEAVDGDW+QVSTVEP
Subjt:  DWVRDVSWAPNLGPPKSTIASASQDGKVVIWTIVREGDQWEGKVLKDFKTPVWRVSWSLTGNILAVADGNNNATLWKEAVDGDWEQVSTVEP

XP_022153671.1 protein transport protein SEC13 homolog B [Momordica charantia]8.1e-4797.83Show/hide
Query:  DWVRDVSWAPNLGPPKSTIASASQDGKVVIWTIVREGDQWEGKVLKDFKTPVWRVSWSLTGNILAVADGNNNATLWKEAVDGDWEQVSTVEP
        DWVRDVSWAPNLG PKSTIASASQDGKVVIWTIVREGDQWEGKVLKDFKTPVWRVSWSLTGNILAVADGNNN TLWKEAVDGDWEQVSTVEP
Subjt:  DWVRDVSWAPNLGPPKSTIASASQDGKVVIWTIVREGDQWEGKVLKDFKTPVWRVSWSLTGNILAVADGNNNATLWKEAVDGDWEQVSTVEP

XP_023528381.1 protein transport protein SEC13 homolog B [Cucurbita pepo subsp. pepo]6.8e-4694.57Show/hide
Query:  DWVRDVSWAPNLGPPKSTIASASQDGKVVIWTIVREGDQWEGKVLKDFKTPVWRVSWSLTGNILAVADGNNNATLWKEAVDGDWEQVSTVEP
        DWVRDVSWAPNLG PKSTIASASQDGKVVIWT+VREGDQWEGKVLKDFKTPVWRVSWSLTGNILAVADGNNN +LWKEAVDGDW+QVSTVEP
Subjt:  DWVRDVSWAPNLGPPKSTIASASQDGKVVIWTIVREGDQWEGKVLKDFKTPVWRVSWSLTGNILAVADGNNNATLWKEAVDGDWEQVSTVEP

XP_038878201.1 protein transport protein SEC13 homolog B-like isoform X1 [Benincasa hispida]8.9e-4692.39Show/hide
Query:  DWVRDVSWAPNLGPPKSTIASASQDGKVVIWTIVREGDQWEGKVLKDFKTPVWRVSWSLTGNILAVADGNNNATLWKEAVDGDWEQVSTVEP
        DWVRDVSWAPNLG PKSTIASASQDGKVVIWT+++EGDQWEGKVLKDFKTPVWRVSWSLTGNILAVADGNNN TLWKEAVDGDW+QVST+EP
Subjt:  DWVRDVSWAPNLGPPKSTIASASQDGKVVIWTIVREGDQWEGKVLKDFKTPVWRVSWSLTGNILAVADGNNNATLWKEAVDGDWEQVSTVEP

TrEMBL top hitse value%identityAlignment
A0A0A0LDB9 WD_REPEATS_REGION domain-containing protein7.4e-4693.48Show/hide
Query:  DWVRDVSWAPNLGPPKSTIASASQDGKVVIWTIVREGDQWEGKVLKDFKTPVWRVSWSLTGNILAVADGNNNATLWKEAVDGDWEQVSTVEP
        DWVRDVSWAPNLG PKSTIASASQDGKVVIWT+V+EGDQWEGKVLKDFKTPVWRVSWSLTGNILAVADGNNN +LWKEAVDGDW+QVSTVEP
Subjt:  DWVRDVSWAPNLGPPKSTIASASQDGKVVIWTIVREGDQWEGKVLKDFKTPVWRVSWSLTGNILAVADGNNNATLWKEAVDGDWEQVSTVEP

A0A1S4DWT1 protein transport protein SEC13 homolog B1.6e-4592.39Show/hide
Query:  DWVRDVSWAPNLGPPKSTIASASQDGKVVIWTIVREGDQWEGKVLKDFKTPVWRVSWSLTGNILAVADGNNNATLWKEAVDGDWEQVSTVEP
        DWVRDVSWAPNLG PKSTIASASQDGKVVIWT+V+EGDQWEGKVLKDFKTPVWRVSWSLTGNILAVADGNNN +LWKEAVDGDW+QVSTV+P
Subjt:  DWVRDVSWAPNLGPPKSTIASASQDGKVVIWTIVREGDQWEGKVLKDFKTPVWRVSWSLTGNILAVADGNNNATLWKEAVDGDWEQVSTVEP

A0A5D3CBF9 Protein transport protein SEC13-like protein B1.6e-4592.39Show/hide
Query:  DWVRDVSWAPNLGPPKSTIASASQDGKVVIWTIVREGDQWEGKVLKDFKTPVWRVSWSLTGNILAVADGNNNATLWKEAVDGDWEQVSTVEP
        DWVRDVSWAPNLG PKSTIASASQDGKVVIWT+V+EGDQWEGKVLKDFKTPVWRVSWSLTGNILAVADGNNN +LWKEAVDGDW+QVSTV+P
Subjt:  DWVRDVSWAPNLGPPKSTIASASQDGKVVIWTIVREGDQWEGKVLKDFKTPVWRVSWSLTGNILAVADGNNNATLWKEAVDGDWEQVSTVEP

A0A6J1DLE1 protein transport protein SEC13 homolog B3.9e-4797.83Show/hide
Query:  DWVRDVSWAPNLGPPKSTIASASQDGKVVIWTIVREGDQWEGKVLKDFKTPVWRVSWSLTGNILAVADGNNNATLWKEAVDGDWEQVSTVEP
        DWVRDVSWAPNLG PKSTIASASQDGKVVIWTIVREGDQWEGKVLKDFKTPVWRVSWSLTGNILAVADGNNN TLWKEAVDGDWEQVSTVEP
Subjt:  DWVRDVSWAPNLGPPKSTIASASQDGKVVIWTIVREGDQWEGKVLKDFKTPVWRVSWSLTGNILAVADGNNNATLWKEAVDGDWEQVSTVEP

A0A6J1IY63 protein transport protein SEC13 homolog B1.6e-4593.48Show/hide
Query:  DWVRDVSWAPNLGPPKSTIASASQDGKVVIWTIVREGDQWEGKVLKDFKTPVWRVSWSLTGNILAVADGNNNATLWKEAVDGDWEQVSTVEP
        DWVRDVSWAPNLG PKSTIASASQDGKVVIWT+VREGDQWEGKVLKDFKTPVWRVSWSLTGNILAVADGNNN +LWKEAVD DW+QVSTVEP
Subjt:  DWVRDVSWAPNLGPPKSTIASASQDGKVVIWTIVREGDQWEGKVLKDFKTPVWRVSWSLTGNILAVADGNNNATLWKEAVDGDWEQVSTVEP

SwissProt top hitse value%identityAlignment
O64740 Protein transport protein SEC13 homolog B5.1e-4482.61Show/hide
Query:  DWVRDVSWAPNLGPPKSTIASASQDGKVVIWTIVREGDQWEGKVLKDFKTPVWRVSWSLTGNILAVADGNNNATLWKEAVDGDWEQVSTVEP
        DWVRDV+WAPNLG PKSTIAS SQDGKV+IWT+ +EG+QWEGKVLKDF TPVWRVSWSLTGN+LAV+DGNNN T+WKEAVDG+WEQV+ VEP
Subjt:  DWVRDVSWAPNLGPPKSTIASASQDGKVVIWTIVREGDQWEGKVLKDFKTPVWRVSWSLTGNILAVADGNNNATLWKEAVDGDWEQVSTVEP

Q3ZCC9 Protein SEC13 homolog2.1e-2658.24Show/hide
Query:  DWVRDVSWAPNLGPPKSTIASASQDGKVVIWTI-VREGDQWEGKVLKDFKTPVWRVSWSLTGNILAVADGNNNATLWKEAVDGDWEQVSTV
        DWVRDV+WAP++G P STIAS SQDG+V +WT     G+ W  K+L  F   VW VSWS+T NILAV+ G+N  TLWKE+VDG W  +S V
Subjt:  DWVRDVSWAPNLGPPKSTIASASQDGKVVIWTI-VREGDQWEGKVLKDFKTPVWRVSWSLTGNILAVADGNNNATLWKEAVDGDWEQVSTV

Q5XFW8 Protein SEC13 homolog1.3e-2659.34Show/hide
Query:  DWVRDVSWAPNLGPPKSTIASASQDGKVVIWTI-VREGDQWEGKVLKDFKTPVWRVSWSLTGNILAVADGNNNATLWKEAVDGDWEQVSTV
        DWVRDV+WAP++G P STIAS SQDG+V IWT     G+ W  K+L  F   VW VSWS+T NILAV+ G+N  TLWKE+VDG W  +S V
Subjt:  DWVRDVSWAPNLGPPKSTIASASQDGKVVIWTI-VREGDQWEGKVLKDFKTPVWRVSWSLTGNILAVADGNNNATLWKEAVDGDWEQVSTV

Q9D1M0 Protein SEC13 homolog1.3e-2659.34Show/hide
Query:  DWVRDVSWAPNLGPPKSTIASASQDGKVVIWTI-VREGDQWEGKVLKDFKTPVWRVSWSLTGNILAVADGNNNATLWKEAVDGDWEQVSTV
        DWVRDV+WAP++G P STIAS SQDG+V IWT     G+ W  K+L  F   VW VSWS+T NILAV+ G+N  TLWKE+VDG W  +S V
Subjt:  DWVRDVSWAPNLGPPKSTIASASQDGKVVIWTI-VREGDQWEGKVLKDFKTPVWRVSWSLTGNILAVADGNNNATLWKEAVDGDWEQVSTV

Q9SRI1 Protein transport protein SEC13 homolog A1.9e-4381.52Show/hide
Query:  DWVRDVSWAPNLGPPKSTIASASQDGKVVIWTIVREGDQWEGKVLKDFKTPVWRVSWSLTGNILAVADGNNNATLWKEAVDGDWEQVSTVEP
        DWVRDV+WAPNLG PKSTIAS S+DGKV+IWTI +EG+QWEG VLKDFKTPVWRVSWSLTGN+LAV+DGNNN T+WKE+VDG+WEQV+ VEP
Subjt:  DWVRDVSWAPNLGPPKSTIASASQDGKVVIWTIVREGDQWEGKVLKDFKTPVWRVSWSLTGNILAVADGNNNATLWKEAVDGDWEQVSTVEP

Arabidopsis top hitse value%identityAlignment
AT1G64350.1 Transducin/WD40 repeat-like superfamily protein8.4e-1031.31Show/hide
Query:  DWVRDVSWAPNLGPPKSTIASASQDGKVVIWTIVREGDQWEGKV-------LKDFKTPVWRVSWSLTGNILAVADGNNNATLWKEAVDGDWEQVSTVEP
        D V  +SWAPN+G P   +A A+  G + IW +    D  EG++       L   +  VW++ W ++G  LA    +    LW+  ++G+W + +T+EP
Subjt:  DWVRDVSWAPNLGPPKSTIASASQDGKVVIWTIVREGDQWEGKV-------LKDFKTPVWRVSWSLTGNILAVADGNNNATLWKEAVDGDWEQVSTVEP

AT2G30050.1 transducin family protein / WD-40 repeat family protein3.6e-4582.61Show/hide
Query:  DWVRDVSWAPNLGPPKSTIASASQDGKVVIWTIVREGDQWEGKVLKDFKTPVWRVSWSLTGNILAVADGNNNATLWKEAVDGDWEQVSTVEP
        DWVRDV+WAPNLG PKSTIAS SQDGKV+IWT+ +EG+QWEGKVLKDF TPVWRVSWSLTGN+LAV+DGNNN T+WKEAVDG+WEQV+ VEP
Subjt:  DWVRDVSWAPNLGPPKSTIASASQDGKVVIWTIVREGDQWEGKVLKDFKTPVWRVSWSLTGNILAVADGNNNATLWKEAVDGDWEQVSTVEP

AT3G01340.1 Transducin/WD40 repeat-like superfamily protein1.4e-4481.52Show/hide
Query:  DWVRDVSWAPNLGPPKSTIASASQDGKVVIWTIVREGDQWEGKVLKDFKTPVWRVSWSLTGNILAVADGNNNATLWKEAVDGDWEQVSTVEP
        DWVRDV+WAPNLG PKSTIAS S+DGKV+IWTI +EG+QWEG VLKDFKTPVWRVSWSLTGN+LAV+DGNNN T+WKE+VDG+WEQV+ VEP
Subjt:  DWVRDVSWAPNLGPPKSTIASASQDGKVVIWTIVREGDQWEGKVLKDFKTPVWRVSWSLTGNILAVADGNNNATLWKEAVDGDWEQVSTVEP

AT3G01340.2 Transducin/WD40 repeat-like superfamily protein1.4e-4481.52Show/hide
Query:  DWVRDVSWAPNLGPPKSTIASASQDGKVVIWTIVREGDQWEGKVLKDFKTPVWRVSWSLTGNILAVADGNNNATLWKEAVDGDWEQVSTVEP
        DWVRDV+WAPNLG PKSTIAS S+DGKV+IWTI +EG+QWEG VLKDFKTPVWRVSWSLTGN+LAV+DGNNN T+WKE+VDG+WEQV+ VEP
Subjt:  DWVRDVSWAPNLGPPKSTIASASQDGKVVIWTIVREGDQWEGKVLKDFKTPVWRVSWSLTGNILAVADGNNNATLWKEAVDGDWEQVSTVEP


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
GACTGGGTTAGAGATGTTTCATGGGCTCCGAACCTCGGTCCGCCAAAATCAACGATCGCAAGCGCCTCTCAGGACGGGAAAGTCGTTATATGGACCATAGTCAGAGAAGG
AGATCAATGGGAAGGGAAGGTACTAAAGGACTTCAAAACCCCTGTTTGGAGGGTATCATGGTCGTTGACTGGCAACATCCTGGCCGTGGCTGATGGAAATAACAATGCTA
CTTTATGGAAGGAAGCAGTGGATGGAGATTGGGAGCAAGTTTCAACAGTTGAGCCT
mRNA sequenceShow/hide mRNA sequence
GACTGGGTTAGAGATGTTTCATGGGCTCCGAACCTCGGTCCGCCAAAATCAACGATCGCAAGCGCCTCTCAGGACGGGAAAGTCGTTATATGGACCATAGTCAGAGAAGG
AGATCAATGGGAAGGGAAGGTACTAAAGGACTTCAAAACCCCTGTTTGGAGGGTATCATGGTCGTTGACTGGCAACATCCTGGCCGTGGCTGATGGAAATAACAATGCTA
CTTTATGGAAGGAAGCAGTGGATGGAGATTGGGAGCAAGTTTCAACAGTTGAGCCT
Protein sequenceShow/hide protein sequence
DWVRDVSWAPNLGPPKSTIASASQDGKVVIWTIVREGDQWEGKVLKDFKTPVWRVSWSLTGNILAVADGNNNATLWKEAVDGDWEQVSTVEP