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MS013147 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS013147
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionDNA-directed RNA polymerase subunit
Genome locationscaffold459:629859..629969
RNA-Seq ExpressionMS013147
SyntenyMS013147
Gene Ontology termsGO:0006351 - transcription, DNA-templated (biological process)
GO:0006412 - translation (biological process)
GO:0015986 - ATP synthesis coupled proton transport (biological process)
GO:0005743 - mitochondrial inner membrane (cellular component)
GO:0009507 - chloroplast (cellular component)
GO:0015935 - small ribosomal subunit (cellular component)
GO:0016021 - integral component of membrane (cellular component)
GO:0045261 - proton-transporting ATP synthase complex, catalytic core F(1) (cellular component)
GO:0045263 - proton-transporting ATP synthase complex, coupling factor F(o) (cellular component)
GO:0003677 - DNA binding (molecular function)
GO:0003735 - structural constituent of ribosome (molecular function)
GO:0003899 - DNA-directed 5'-3' RNA polymerase activity (molecular function)
GO:0005524 - ATP binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
GO:0032549 - ribonucleoside binding (molecular function)
GO:0046933 - proton-transporting ATP synthase activity, rotational mechanism (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
QJS52311.1 RNA polymerase beta'' subunit [Indofevillea khasiana]4.3e-0786.49Show/hide
Query:  VIDSNLLSNLTQRNMEVLMAERADLVFHNKLIDGIVI
        +IDSNLLSN TQRNMEVLMAERADLVFHNK+IDG  I
Subjt:  VIDSNLLSNLTQRNMEVLMAERADLVFHNKLIDGIVI
QWQ50133.1 RNA polymerase beta'' subunit [Cyclanthera pedata]2.5e-0786.49Show/hide
Query:  VIDSNLLSNLTQRNMEVLMAERADLVFHNKLIDGIVI
        +IDSNLLSN TQRNMEVLMAERADLVFHNK+IDG  I
Subjt:  VIDSNLLSNLTQRNMEVLMAERADLVFHNKLIDGIVI
RZC81611.1 hypothetical protein C5167_044175 [Papaver somniferum]1.6e-0683.78Show/hide
Query:  VIDSNLLSNLTQRNMEVLMAERADLVFHNKLIDGIVI
        + DSNLLSN TQRNMEVLMAERADLVFHNK IDG  I
Subjt:  VIDSNLLSNLTQRNMEVLMAERADLVFHNKLIDGIVI
YP_009525176.1 RNA polymerase beta subunit [Hodgsonia macrocarpa]2.5e-0786.49Show/hide
Query:  VIDSNLLSNLTQRNMEVLMAERADLVFHNKLIDGIVI
        +IDSNLLSN TQRNMEVLMAERADLVFHNK+IDG  I
Subjt:  VIDSNLLSNLTQRNMEVLMAERADLVFHNKLIDGIVI
YP_010131084.1 RNA polymerase beta'' subunit [Benincasa hispida]2.5e-0786.49Show/hide
Query:  VIDSNLLSNLTQRNMEVLMAERADLVFHNKLIDGIVI
        +IDSNLLSN TQRNMEVLMAERADLVFHNK+IDG  I
Subjt:  VIDSNLLSNLTQRNMEVLMAERADLVFHNKLIDGIVI
TrEMBL top hitse value%identityAlignment
A0A346QNZ0 DNA-directed RNA polymerase subunit beta''1.2e-0786.49Show/hide
Query:  VIDSNLLSNLTQRNMEVLMAERADLVFHNKLIDGIVI
        +IDSNLLSN TQRNMEVLMAERADLVFHNK+IDG  I
Subjt:  VIDSNLLSNLTQRNMEVLMAERADLVFHNKLIDGIVI
A0A4Y7LBE6 DNA-directed RNA polymerase7.9e-0783.78Show/hide
Query:  VIDSNLLSNLTQRNMEVLMAERADLVFHNKLIDGIVI
        + DSNLLSN TQRNMEVLMAERADLVFHNK IDG  I
Subjt:  VIDSNLLSNLTQRNMEVLMAERADLVFHNKLIDGIVI
A0A6M4SPN7 DNA-directed RNA polymerase subunit beta''2.1e-0786.49Show/hide
Query:  VIDSNLLSNLTQRNMEVLMAERADLVFHNKLIDGIVI
        +IDSNLLSN TQRNMEVLMAERADLVFHNK+IDG  I
Subjt:  VIDSNLLSNLTQRNMEVLMAERADLVFHNKLIDGIVI
A0A7J7M9Q4 DNA-directed RNA polymerase subunit3.0e-0685.29Show/hide
Query:  VIDSNLLSNLTQRNMEVLMAERADLVFHNKLIDG
        + DSNLLSN T RNMEVLMAERADLVFHNK IDG
Subjt:  VIDSNLLSNLTQRNMEVLMAERADLVFHNKLIDG
A0A7T3QNJ7 RNA polymerase beta'' subunit1.2e-0786.49Show/hide
Query:  VIDSNLLSNLTQRNMEVLMAERADLVFHNKLIDGIVI
        +IDSNLLSN TQRNMEVLMAERADLVFHNK+IDG  I
Subjt:  VIDSNLLSNLTQRNMEVLMAERADLVFHNKLIDGIVI
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
GTCATTGACTCAAACCTATTGTCGAACCTCACTCAGCGTAATATGGAGGTACTTATGGCGGAACGGGCCGATCTGGTCTTTCACAATAAATTGATAGATGGAATTGTCAT
T
mRNA sequenceShow/hide mRNA sequence
GTCATTGACTCAAACCTATTGTCGAACCTCACTCAGCGTAATATGGAGGTACTTATGGCGGAACGGGCCGATCTGGTCTTTCACAATAAATTGATAGATGGAATTGTCAT
T
Protein sequenceShow/hide protein sequence
VIDSNLLSNLTQRNMEVLMAERADLVFHNKLIDGIVI