; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MS013163 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS013163
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Descriptionpentatricopeptide (PPR) repeat-containing protein
Genome locationscaffold459:820860..821027
RNA-Seq ExpressionMS013163
SyntenyMS013163
Gene Ontology termsGO:0005515 - protein binding (molecular function)
InterPro domainsIPR002885 - Pentatricopeptide repeat
IPR011990 - Tetratricopeptide-like helical domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0051178.1 putative pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa]4.2e-1471.43Show/hide
Query:  IVGMYAKLGRMGDARKVFDKMHLRSVVSWNTMVSGYAYNCNVDGASRMFLKWSQKG
        ++GMYAKL RM DARKVFDKM ++SVVSWNTMVSGYAYN +V+GASRMF +   +G
Subjt:  IVGMYAKLGRMGDARKVFDKMHLRSVVSWNTMVSGYAYNCNVDGASRMFLKWSQKG

XP_004146851.1 putative pentatricopeptide repeat-containing protein At1g17630 [Cucumis sativus]4.2e-1471.43Show/hide
Query:  IVGMYAKLGRMGDARKVFDKMHLRSVVSWNTMVSGYAYNCNVDGASRMFLKWSQKG
        ++GMYAKL RM DARKVFDKM ++SVVSWNTMVSGYAYN +V+GASRMF +   +G
Subjt:  IVGMYAKLGRMGDARKVFDKMHLRSVVSWNTMVSGYAYNCNVDGASRMFLKWSQKG

XP_008447611.1 PREDICTED: putative pentatricopeptide repeat-containing protein At1g17630 [Cucumis melo]4.2e-1471.43Show/hide
Query:  IVGMYAKLGRMGDARKVFDKMHLRSVVSWNTMVSGYAYNCNVDGASRMFLKWSQKG
        ++GMYAKL RM DARKVFDKM ++SVVSWNTMVSGYAYN +V+GASRMF +   +G
Subjt:  IVGMYAKLGRMGDARKVFDKMHLRSVVSWNTMVSGYAYNCNVDGASRMFLKWSQKG

XP_022148095.1 putative pentatricopeptide repeat-containing protein At1g17630 [Momordica charantia]3.1e-1778.57Show/hide
Query:  IVGMYAKLGRMGDARKVFDKMHLRSVVSWNTMVSGYAYNCNVDGASRMFLKWSQKG
        ++GMYAKLGRMGDA+KVFDKM L+SVVSWNTMVSG+AYN +VDGASRMFLK   +G
Subjt:  IVGMYAKLGRMGDARKVFDKMHLRSVVSWNTMVSGYAYNCNVDGASRMFLKWSQKG

XP_022997825.1 putative pentatricopeptide repeat-containing protein At1g17630 [Cucurbita maxima]2.5e-1469.64Show/hide
Query:  IVGMYAKLGRMGDARKVFDKMHLRSVVSWNTMVSGYAYNCNVDGASRMFLKWSQKG
        ++GMY KL RMGDARKVFDKM ++SV+SWNTMVSGYAYN +V+GA RMFL+   +G
Subjt:  IVGMYAKLGRMGDARKVFDKMHLRSVVSWNTMVSGYAYNCNVDGASRMFLKWSQKG

TrEMBL top hitse value%identityAlignment
A0A0A0LFT1 Uncharacterized protein2.0e-1471.43Show/hide
Query:  IVGMYAKLGRMGDARKVFDKMHLRSVVSWNTMVSGYAYNCNVDGASRMFLKWSQKG
        ++GMYAKL RM DARKVFDKM ++SVVSWNTMVSGYAYN +V+GASRMF +   +G
Subjt:  IVGMYAKLGRMGDARKVFDKMHLRSVVSWNTMVSGYAYNCNVDGASRMFLKWSQKG

A0A5A7U7B1 Putative pentatricopeptide repeat-containing protein2.0e-1471.43Show/hide
Query:  IVGMYAKLGRMGDARKVFDKMHLRSVVSWNTMVSGYAYNCNVDGASRMFLKWSQKG
        ++GMYAKL RM DARKVFDKM ++SVVSWNTMVSGYAYN +V+GASRMF +   +G
Subjt:  IVGMYAKLGRMGDARKVFDKMHLRSVVSWNTMVSGYAYNCNVDGASRMFLKWSQKG

A0A5D3BVI7 Putative pentatricopeptide repeat-containing protein2.0e-1471.43Show/hide
Query:  IVGMYAKLGRMGDARKVFDKMHLRSVVSWNTMVSGYAYNCNVDGASRMFLKWSQKG
        ++GMYAKL RM DARKVFDKM ++SVVSWNTMVSGYAYN +V+GASRMF +   +G
Subjt:  IVGMYAKLGRMGDARKVFDKMHLRSVVSWNTMVSGYAYNCNVDGASRMFLKWSQKG

A0A6J1D1Z6 putative pentatricopeptide repeat-containing protein At1g176301.5e-1778.57Show/hide
Query:  IVGMYAKLGRMGDARKVFDKMHLRSVVSWNTMVSGYAYNCNVDGASRMFLKWSQKG
        ++GMYAKLGRMGDA+KVFDKM L+SVVSWNTMVSG+AYN +VDGASRMFLK   +G
Subjt:  IVGMYAKLGRMGDARKVFDKMHLRSVVSWNTMVSGYAYNCNVDGASRMFLKWSQKG

A0A6J1KAZ0 putative pentatricopeptide repeat-containing protein At1g176301.2e-1469.64Show/hide
Query:  IVGMYAKLGRMGDARKVFDKMHLRSVVSWNTMVSGYAYNCNVDGASRMFLKWSQKG
        ++GMY KL RMGDARKVFDKM ++SV+SWNTMVSGYAYN +V+GA RMFL+   +G
Subjt:  IVGMYAKLGRMGDARKVFDKMHLRSVVSWNTMVSGYAYNCNVDGASRMFLKWSQKG

SwissProt top hitse value%identityAlignment
Q1PEU4 Pentatricopeptide repeat-containing protein At2g448805.2e-0751.02Show/hide
Query:  IVGMYAKLGRMGDARKVFDKMHLRSVVSWNTMVSGYAYNCNVDGASRMF
        +V MYAK G+MG AR  FD+M  RS VSW  ++SGY     +D AS++F
Subjt:  IVGMYAKLGRMGDARKVFDKMHLRSVVSWNTMVSGYAYNCNVDGASRMF

Q56XI1 Pentatricopeptide repeat-containing protein At1g09410, mitochondrial3.0e-0747.27Show/hide
Query:  IVGMYAKLGRMGDARKVFDKMHLRSVVSWNTMVSGYAYNCNVDGASRMFLKWSQK
        +V  Y K G + +ARKVFD M  R+VVSW  +V GY +N  VD A  +F K  +K
Subjt:  IVGMYAKLGRMGDARKVFDKMHLRSVVSWNTMVSGYAYNCNVDGASRMFLKWSQK

Q9M4P3 Pentatricopeptide repeat-containing protein At4g16835, mitochondrial3.0e-0746.94Show/hide
Query:  IVGMYAKLGRMGDARKVFDKMHLRSVVSWNTMVSGYAYNCNVDGASRMF
        ++ MY K G +GDA K+F+ M  + VV+WN M+SGYA + N D A  +F
Subjt:  IVGMYAKLGRMGDARKVFDKMHLRSVVSWNTMVSGYAYNCNVDGASRMF

Q9MA50 Pentatricopeptide repeat-containing protein At1g05750, chloroplastic3.6e-0847.27Show/hide
Query:  IVGMYAKLGRMGDARKVFDKMHLRSVVSWNTMVSGYAYNCNVDGASRMFLKWSQK
        I+GMY+K GR   AR VFD M  ++ V+WNTM+ GY  +  VD A++MF K  ++
Subjt:  IVGMYAKLGRMGDARKVFDKMHLRSVVSWNTMVSGYAYNCNVDGASRMFLKWSQK

Q9SKQ4 Pentatricopeptide repeat-containing protein At2g210903.9e-0763.89Show/hide
Query:  IVGMYAKLGRMGDARKVFDKMHLRSVVSWNTMVSGY
        ++GMY K G+  DA KVFD+MHLR++ SWN MVSGY
Subjt:  IVGMYAKLGRMGDARKVFDKMHLRSVVSWNTMVSGY

Arabidopsis top hitse value%identityAlignment
AT1G05750.1 Tetratricopeptide repeat (TPR)-like superfamily protein2.5e-0947.27Show/hide
Query:  IVGMYAKLGRMGDARKVFDKMHLRSVVSWNTMVSGYAYNCNVDGASRMFLKWSQK
        I+GMY+K GR   AR VFD M  ++ V+WNTM+ GY  +  VD A++MF K  ++
Subjt:  IVGMYAKLGRMGDARKVFDKMHLRSVVSWNTMVSGYAYNCNVDGASRMFLKWSQK

AT1G09410.1 pentatricopeptide (PPR) repeat-containing protein2.1e-0847.27Show/hide
Query:  IVGMYAKLGRMGDARKVFDKMHLRSVVSWNTMVSGYAYNCNVDGASRMFLKWSQK
        +V  Y K G + +ARKVFD M  R+VVSW  +V GY +N  VD A  +F K  +K
Subjt:  IVGMYAKLGRMGDARKVFDKMHLRSVVSWNTMVSGYAYNCNVDGASRMFLKWSQK

AT2G21090.1 Pentatricopeptide repeat (PPR-like) superfamily protein2.8e-0863.89Show/hide
Query:  IVGMYAKLGRMGDARKVFDKMHLRSVVSWNTMVSGY
        ++GMY K G+  DA KVFD+MHLR++ SWN MVSGY
Subjt:  IVGMYAKLGRMGDARKVFDKMHLRSVVSWNTMVSGY

AT2G44880.1 Pentatricopeptide repeat (PPR-like) superfamily protein3.7e-0851.02Show/hide
Query:  IVGMYAKLGRMGDARKVFDKMHLRSVVSWNTMVSGYAYNCNVDGASRMF
        +V MYAK G+MG AR  FD+M  RS VSW  ++SGY     +D AS++F
Subjt:  IVGMYAKLGRMGDARKVFDKMHLRSVVSWNTMVSGYAYNCNVDGASRMF

AT4G16835.1 Tetratricopeptide repeat (TPR)-like superfamily protein2.1e-0846.94Show/hide
Query:  IVGMYAKLGRMGDARKVFDKMHLRSVVSWNTMVSGYAYNCNVDGASRMF
        ++ MY K G +GDA K+F+ M  + VV+WN M+SGYA + N D A  +F
Subjt:  IVGMYAKLGRMGDARKVFDKMHLRSVVSWNTMVSGYAYNCNVDGASRMF


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATTGTCGGGATGTATGCAAAGCTCGGACGAATGGGTGATGCTCGGAAAGTGTTCGATAAAATGCACCTCAGAAGTGTAGTTTCTTGGAACACTATGGTTTCTGGTTATGC
CTATAATTGTAATGTTGATGGTGCTTCTAGGATGTTCCTTAAATGGAGTCAGAAGGGG
mRNA sequenceShow/hide mRNA sequence
ATTGTCGGGATGTATGCAAAGCTCGGACGAATGGGTGATGCTCGGAAAGTGTTCGATAAAATGCACCTCAGAAGTGTAGTTTCTTGGAACACTATGGTTTCTGGTTATGC
CTATAATTGTAATGTTGATGGTGCTTCTAGGATGTTCCTTAAATGGAGTCAGAAGGGG
Protein sequenceShow/hide protein sequence
IVGMYAKLGRMGDARKVFDKMHLRSVVSWNTMVSGYAYNCNVDGASRMFLKWSQKG