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MS013168 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS013168
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionPectinesterase
Genome locationscaffold459:845849..845974
RNA-Seq ExpressionMS013168
SyntenyMS013168
Gene Ontology termsGO:0042545 - cell wall modification (biological process)
GO:0045490 - pectin catabolic process (biological process)
GO:0005576 - extracellular region (cellular component)
GO:0030599 - pectinesterase activity (molecular function)
GO:0045330 - aspartyl esterase activity (molecular function)
InterPro domainsIPR000070 - Pectinesterase, catalytic
IPR012334 - Pectin lyase fold


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0055285.1 putative pectinesterase/pectinesterase inhibitor 47 [Cucumis melo var. makuwa]2.9e-0458.54Show/hide
Query:  SKDQVTMSLGQLWRSYYSTVIFMESFLDDVIELGGWSEWSG
        +K  V + LG+LWR  YS V+FMESFLDDV+   GW EW G
Subjt:  SKDQVTMSLGQLWRSYYSTVIFMESFLDDVIELGGWSEWSG

XP_008465596.1 PREDICTED: probable pectinesterase/pectinesterase inhibitor 47, partial [Cucumis melo]2.9e-0458.54Show/hide
Query:  SKDQVTMSLGQLWRSYYSTVIFMESFLDDVIELGGWSEWSG
        +K  V + LG+LWR  YS V+FMESFLDDV+   GW EW G
Subjt:  SKDQVTMSLGQLWRSYYSTVIFMESFLDDVIELGGWSEWSG

XP_022148123.1 probable pectinesterase/pectinesterase inhibitor 39 [Momordica charantia]2.0e-0875.61Show/hide
Query:  KDQVTMSLGQLWRSYYSTVIFMESFLDDVIELGGWSEWSGT
        KDQVT+SLG+ WR+ YSTVIFMESFLDD++E GGWSEW  T
Subjt:  KDQVTMSLGQLWRSYYSTVIFMESFLDDVIELGGWSEWSGT

XP_022150325.1 probable pectinesterase/pectinesterase inhibitor 44 [Momordica charantia]1.7e-0459.52Show/hide
Query:  SKDQVTMSLGQLWRSYYSTVIFMESFLDDVIELGGWSEWSGT
        SK++VT+ LG+ WR+ YS V F+ESFLDDV++  GW EW GT
Subjt:  SKDQVTMSLGQLWRSYYSTVIFMESFLDDVIELGGWSEWSGT

XP_022150332.1 probable pectinesterase/pectinesterase inhibitor 39 [Momordica charantia]1.0e-0465.85Show/hide
Query:  SKDQVTMSLGQLWRSYYSTVIFMESFLDDVIELGGWSEWSG
        SKD VTM LG+ WR  YS VIFMESFLD V++  GW EW G
Subjt:  SKDQVTMSLGQLWRSYYSTVIFMESFLDDVIELGGWSEWSG

TrEMBL top hitse value%identityAlignment
A0A5A7UNS3 Pectinesterase1.4e-0458.54Show/hide
Query:  SKDQVTMSLGQLWRSYYSTVIFMESFLDDVIELGGWSEWSG
        +K  V + LG+LWR  YS V+FMESFLDDV+   GW EW G
Subjt:  SKDQVTMSLGQLWRSYYSTVIFMESFLDDVIELGGWSEWSG

A0A5D3BM28 Pectinesterase1.4e-0458.54Show/hide
Query:  SKDQVTMSLGQLWRSYYSTVIFMESFLDDVIELGGWSEWSG
        +K  V + LG+LWR  YS V+FMESFLDDV+   GW EW G
Subjt:  SKDQVTMSLGQLWRSYYSTVIFMESFLDDVIELGGWSEWSG

A0A6J1D381 Pectinesterase9.5e-0975.61Show/hide
Query:  KDQVTMSLGQLWRSYYSTVIFMESFLDDVIELGGWSEWSGT
        KDQVT+SLG+ WR+ YSTVIFMESFLDD++E GGWSEW  T
Subjt:  KDQVTMSLGQLWRSYYSTVIFMESFLDDVIELGGWSEWSGT

A0A6J1D863 Pectinesterase8.4e-0559.52Show/hide
Query:  SKDQVTMSLGQLWRSYYSTVIFMESFLDDVIELGGWSEWSGT
        SK++VT+ LG+ WR+ YS V F+ESFLDDV++  GW EW GT
Subjt:  SKDQVTMSLGQLWRSYYSTVIFMESFLDDVIELGGWSEWSGT

A0A6J1DAG5 Pectinesterase4.9e-0565.85Show/hide
Query:  SKDQVTMSLGQLWRSYYSTVIFMESFLDDVIELGGWSEWSG
        SKD VTM LG+ WR  YS VIFMESFLD V++  GW EW G
Subjt:  SKDQVTMSLGQLWRSYYSTVIFMESFLDDVIELGGWSEWSG

SwissProt top hitse value%identityAlignment
O48711 Probable pectinesterase/pectinesterase inhibitor 126.8e-0443.9Show/hide
Query:  SKDQVTMSLGQLWRSYYSTVIFMESFLDDVIELGGWSEWSG
        S ++V   LG+ WR +  TV+ MES++D+ I+  GWS+W+G
Subjt:  SKDQVTMSLGQLWRSYYSTVIFMESFLDDVIELGGWSEWSG

Arabidopsis top hitse value%identityAlignment
AT1G11370.1 Pectin lyase-like superfamily protein1.4e-0452.78Show/hide
Query:  KDQVTMSLGQLWRSYYSTVIFMESFLDDVIELGGWS
        K  V   LG+ WR+ +S V+FMESF+DDVI+  GW+
Subjt:  KDQVTMSLGQLWRSYYSTVIFMESFLDDVIELGGWS

AT2G26440.1 Plant invertase/pectin methylesterase inhibitor superfamily4.8e-0543.9Show/hide
Query:  SKDQVTMSLGQLWRSYYSTVIFMESFLDDVIELGGWSEWSG
        S ++V   LG+ WR +  TV+ MES++D+ I+  GWS+W+G
Subjt:  SKDQVTMSLGQLWRSYYSTVIFMESFLDDVIELGGWSEWSG

AT3G10720.1 Plant invertase/pectin methylesterase inhibitor superfamily1.8e-0444.12Show/hide
Query:  LGQLWRSYYSTVIFMESFLDDVIELGGWSEWSGT
        LG+ W+  YS  +FM+S++ D+++  GW EW+GT
Subjt:  LGQLWRSYYSTVIFMESFLDDVIELGGWSEWSGT

AT3G14310.1 pectin methylesterase 31.1e-0455.88Show/hide
Query:  LGQLWRSYYSTVIFMESFLDDVIELGGWSEWSGT
        LG+ W+ Y  TVI M+S + DVI   GWSEW+GT
Subjt:  LGQLWRSYYSTVIFMESFLDDVIELGGWSEWSGT

AT4G02330.1 Plant invertase/pectin methylesterase inhibitor superfamily8.3e-0548.48Show/hide
Query:  LGQLWRSYYSTVIFMESFLDDVIELGGWSEWSG
        LG+ W+  YS  +FM+S++D+V+E  GW EW+G
Subjt:  LGQLWRSYYSTVIFMESFLDDVIELGGWSEWSG


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
AGCAAGGATCAAGTAACGATGTCTCTTGGACAACTATGGAGGAGCTACTACTCTACAGTTATTTTCATGGAGTCTTTCCTAGATGATGTAATTGAACTAGGAGGATGGTC
GGAATGGTCAGGGACA
mRNA sequenceShow/hide mRNA sequence
AGCAAGGATCAAGTAACGATGTCTCTTGGACAACTATGGAGGAGCTACTACTCTACAGTTATTTTCATGGAGTCTTTCCTAGATGATGTAATTGAACTAGGAGGATGGTC
GGAATGGTCAGGGACA
Protein sequenceShow/hide protein sequence
SKDQVTMSLGQLWRSYYSTVIFMESFLDDVIELGGWSEWSGT