; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MS013172 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS013172
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionMediator of RNA polymerase II transcription subunit 6
Genome locationscaffold459:880661..882986
RNA-Seq ExpressionMS013172
SyntenyMS013172
Gene Ontology termsGO:0006357 - regulation of transcription by RNA polymerase II (biological process)
GO:0045893 - positive regulation of transcription, DNA-templated (biological process)
GO:0016592 - mediator complex (cellular component)
GO:0070847 - core mediator complex (cellular component)
GO:0003713 - transcription coactivator activity (molecular function)
InterPro domainsIPR007018 - Mediator complex, subunit Med6
IPR016820 - Mediator complex, subunit Med6, metazoa/plant
IPR038566 - Mediator complex, subunit Med6 superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004149176.2 mediator of RNA polymerase II transcription subunit 6 [Cucumis sativus]1.4e-13395.28Show/hide
Query:  MATPPPPAAPPGIANFEGGPPPAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFALSPFYDWTCNNEQLRMRSIHPLDLSQLSKMTGTEYMLNEVME
        MATPPPP APPG  NFEGGP PAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFALSPFYDWTCNNEQLRMRSIHPLDLSQLSKMTG EYMLNEVME
Subjt:  MATPPPPAAPPGIANFEGGPPPAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFALSPFYDWTCNNEQLRMRSIHPLDLSQLSKMTGTEYMLNEVME

Query:  PHLFVFRKQKRDGPEKVTPMLTYYILDGSIYQAPQLCNVFAARVSRALYYISKAFTTASSKLEKIGYVDSENESEEVKPGKETINFKEVKRVDHILASLQ
        PHLFVFRKQKRDGPEKVTPMLTYYILDGSIYQAPQLC+VFAARVSRALYYISKAFTTASSKLEKIGYVDSENESEEVKP KETINFKEVKRVDHILASLQ
Subjt:  PHLFVFRKQKRDGPEKVTPMLTYYILDGSIYQAPQLCNVFAARVSRALYYISKAFTTASSKLEKIGYVDSENESEEVKPGKETINFKEVKRVDHILASLQ

Query:  RKLPPAPPPPPFPEGYVPAPTAEVEKGPENQPAESQQPSADPIIDQGPAKRMKF
        RKLPPAPPPPPFPEGY PA TAE EKGPENQ  ESQQPSADPIIDQGPAKRMKF
Subjt:  RKLPPAPPPPPFPEGYVPAPTAEVEKGPENQPAESQQPSADPIIDQGPAKRMKF

XP_008447572.1 PREDICTED: mediator of RNA polymerase II transcription subunit 6 isoform X1 [Cucumis melo]1.8e-13395.29Show/hide
Query:  MATPPPP-AAPPGIANFEGGPPPAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFALSPFYDWTCNNEQLRMRSIHPLDLSQLSKMTGTEYMLNEVM
        MATPPPP  APPG  NFEGGP PAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFALSPFYDWTCNNEQLRMRSIHPLDLSQLSKMTG EYMLNEVM
Subjt:  MATPPPP-AAPPGIANFEGGPPPAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFALSPFYDWTCNNEQLRMRSIHPLDLSQLSKMTGTEYMLNEVM

Query:  EPHLFVFRKQKRDGPEKVTPMLTYYILDGSIYQAPQLCNVFAARVSRALYYISKAFTTASSKLEKIGYVDSENESEEVKPGKETINFKEVKRVDHILASL
        EPHLFVFRKQKRDGPEKVTPMLTYYILDGSIYQAPQLCNVFAARVSRALYYISKAFTTASSKLEKIGYVDSENESEEVKP KETINFKEVKRVDHILASL
Subjt:  EPHLFVFRKQKRDGPEKVTPMLTYYILDGSIYQAPQLCNVFAARVSRALYYISKAFTTASSKLEKIGYVDSENESEEVKPGKETINFKEVKRVDHILASL

Query:  QRKLPPAPPPPPFPEGYVPAPTAEVEKGPENQPAESQQPSADPIIDQGPAKRMKF
        QRKLPPAPPPPPFPEGY PAPTA+ EKGPENQ  ESQQPSADPIIDQGPAKRMKF
Subjt:  QRKLPPAPPPPPFPEGYVPAPTAEVEKGPENQPAESQQPSADPIIDQGPAKRMKF

XP_022148297.1 mediator of RNA polymerase II transcription subunit 6 [Momordica charantia]9.1e-14199.61Show/hide
Query:  MATPPPPAAPPGIANFEGGPPPAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFALSPFYDWTCNNEQLRMRSIHPLDLSQLSKMTGTEYMLNEVME
        MATPPPPAAPPGIANFEGGPPPAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFALSPFYDWTCNNEQLRMRSIHPLDLSQLSKMTGTEYMLNEVME
Subjt:  MATPPPPAAPPGIANFEGGPPPAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFALSPFYDWTCNNEQLRMRSIHPLDLSQLSKMTGTEYMLNEVME

Query:  PHLFVFRKQKRDGPEKVTPMLTYYILDGSIYQAPQLCNVFAARVSRALYYISKAFTTASSKLEKIGYVDSENESEEVKPGKETINFKEVKRVDHILASLQ
        PHLFVFRKQKRDGPEKVTPMLTYYILDGSIYQAPQLCNVFAARVSRALYYISKAFTTASSKLEKIGYVDSENESEEVKPGKETINFKEVKRVDHILASLQ
Subjt:  PHLFVFRKQKRDGPEKVTPMLTYYILDGSIYQAPQLCNVFAARVSRALYYISKAFTTASSKLEKIGYVDSENESEEVKPGKETINFKEVKRVDHILASLQ

Query:  RKLPPAPPPPPFPEGYVPAPTAEVEKGPENQPAESQQPSADPIIDQGPAKRMKF
        RKLPPAPPPPPFPEGYVPAPTAEVEKGPENQPAE QQPSADPIIDQGPAKRMKF
Subjt:  RKLPPAPPPPPFPEGYVPAPTAEVEKGPENQPAESQQPSADPIIDQGPAKRMKF

XP_023524903.1 mediator of RNA polymerase II transcription subunit 6 [Cucurbita pepo subsp. pepo]2.1e-12992.91Show/hide
Query:  MATPPPPAAPPGIANFEGGPPPAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFALSPFYDWTCNNEQLRMRSIHPLDLSQLSKMTGTEYMLNEVME
        MATPP    PPGI NFEGGPPPAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFALSPFYDWTCNNEQLRMRSIHPLDLSQLSKMTG EYMLNEVME
Subjt:  MATPPPPAAPPGIANFEGGPPPAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFALSPFYDWTCNNEQLRMRSIHPLDLSQLSKMTGTEYMLNEVME

Query:  PHLFVFRKQKRDGPEKVTPMLTYYILDGSIYQAPQLCNVFAARVSRALYYISKAFTTASSKLEKIGYVDSENESEEVKPGKETINFKEVKRVDHILASLQ
        PHLFVFRKQKRDGPEKVTPMLTYYILDGSIYQAPQLCNVFAARVSRALYYISKAFTTASSKLEKIGYVDSENESEEVKP K TI+FKEVKRVD ILASLQ
Subjt:  PHLFVFRKQKRDGPEKVTPMLTYYILDGSIYQAPQLCNVFAARVSRALYYISKAFTTASSKLEKIGYVDSENESEEVKPGKETINFKEVKRVDHILASLQ

Query:  RKLPPAPPPPPFPEGYVPAPTAEVEKGPENQPAESQQPSADPIIDQGPAKRMKF
        RKLPPAPPPPPFPEGYVPAP +E EKGPE+Q  E QQP+ADPIIDQGPAKRMKF
Subjt:  RKLPPAPPPPPFPEGYVPAPTAEVEKGPENQPAESQQPSADPIIDQGPAKRMKF

XP_038896808.1 mediator of RNA polymerase II transcription subunit 6 [Benincasa hispida]1.1e-13395.28Show/hide
Query:  MATPPPPAAPPGIANFEGGPPPAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFALSPFYDWTCNNEQLRMRSIHPLDLSQLSKMTGTEYMLNEVME
        MATPPPP APPGI NFEGGP PAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFALSPFYDWTCNNEQLRMRSIHPLDLSQLSKMTG EYMLNEVME
Subjt:  MATPPPPAAPPGIANFEGGPPPAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFALSPFYDWTCNNEQLRMRSIHPLDLSQLSKMTGTEYMLNEVME

Query:  PHLFVFRKQKRDGPEKVTPMLTYYILDGSIYQAPQLCNVFAARVSRALYYISKAFTTASSKLEKIGYVDSENESEEVKPGKETINFKEVKRVDHILASLQ
        PHLFVFRKQKRDGPEKVTPMLTYYILDGSIYQAPQLCNVFAARVSRALYYISKAFTTASSKLEKIGYVDSENE EEVKP KETINFKEVKRVDHILASLQ
Subjt:  PHLFVFRKQKRDGPEKVTPMLTYYILDGSIYQAPQLCNVFAARVSRALYYISKAFTTASSKLEKIGYVDSENESEEVKPGKETINFKEVKRVDHILASLQ

Query:  RKLPPAPPPPPFPEGYVPAPTAEVEKGPENQPAESQQPSADPIIDQGPAKRMKF
        RKLPPAPPPPPFPEGY PAPTAE EKGPEN   ESQQP ADPIIDQGPAKRMKF
Subjt:  RKLPPAPPPPPFPEGYVPAPTAEVEKGPENQPAESQQPSADPIIDQGPAKRMKF

TrEMBL top hitse value%identityAlignment
A0A0A0L8C2 Mediator of RNA polymerase II transcription subunit 66.8e-13495.28Show/hide
Query:  MATPPPPAAPPGIANFEGGPPPAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFALSPFYDWTCNNEQLRMRSIHPLDLSQLSKMTGTEYMLNEVME
        MATPPPP APPG  NFEGGP PAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFALSPFYDWTCNNEQLRMRSIHPLDLSQLSKMTG EYMLNEVME
Subjt:  MATPPPPAAPPGIANFEGGPPPAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFALSPFYDWTCNNEQLRMRSIHPLDLSQLSKMTGTEYMLNEVME

Query:  PHLFVFRKQKRDGPEKVTPMLTYYILDGSIYQAPQLCNVFAARVSRALYYISKAFTTASSKLEKIGYVDSENESEEVKPGKETINFKEVKRVDHILASLQ
        PHLFVFRKQKRDGPEKVTPMLTYYILDGSIYQAPQLC+VFAARVSRALYYISKAFTTASSKLEKIGYVDSENESEEVKP KETINFKEVKRVDHILASLQ
Subjt:  PHLFVFRKQKRDGPEKVTPMLTYYILDGSIYQAPQLCNVFAARVSRALYYISKAFTTASSKLEKIGYVDSENESEEVKPGKETINFKEVKRVDHILASLQ

Query:  RKLPPAPPPPPFPEGYVPAPTAEVEKGPENQPAESQQPSADPIIDQGPAKRMKF
        RKLPPAPPPPPFPEGY PA TAE EKGPENQ  ESQQPSADPIIDQGPAKRMKF
Subjt:  RKLPPAPPPPPFPEGYVPAPTAEVEKGPENQPAESQQPSADPIIDQGPAKRMKF

A0A1S3BHR9 Mediator of RNA polymerase II transcription subunit 68.9e-13495.29Show/hide
Query:  MATPPPP-AAPPGIANFEGGPPPAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFALSPFYDWTCNNEQLRMRSIHPLDLSQLSKMTGTEYMLNEVM
        MATPPPP  APPG  NFEGGP PAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFALSPFYDWTCNNEQLRMRSIHPLDLSQLSKMTG EYMLNEVM
Subjt:  MATPPPP-AAPPGIANFEGGPPPAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFALSPFYDWTCNNEQLRMRSIHPLDLSQLSKMTGTEYMLNEVM

Query:  EPHLFVFRKQKRDGPEKVTPMLTYYILDGSIYQAPQLCNVFAARVSRALYYISKAFTTASSKLEKIGYVDSENESEEVKPGKETINFKEVKRVDHILASL
        EPHLFVFRKQKRDGPEKVTPMLTYYILDGSIYQAPQLCNVFAARVSRALYYISKAFTTASSKLEKIGYVDSENESEEVKP KETINFKEVKRVDHILASL
Subjt:  EPHLFVFRKQKRDGPEKVTPMLTYYILDGSIYQAPQLCNVFAARVSRALYYISKAFTTASSKLEKIGYVDSENESEEVKPGKETINFKEVKRVDHILASL

Query:  QRKLPPAPPPPPFPEGYVPAPTAEVEKGPENQPAESQQPSADPIIDQGPAKRMKF
        QRKLPPAPPPPPFPEGY PAPTA+ EKGPENQ  ESQQPSADPIIDQGPAKRMKF
Subjt:  QRKLPPAPPPPPFPEGYVPAPTAEVEKGPENQPAESQQPSADPIIDQGPAKRMKF

A0A5D3CDR8 Mediator of RNA polymerase II transcription subunit 68.9e-13495.29Show/hide
Query:  MATPPPP-AAPPGIANFEGGPPPAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFALSPFYDWTCNNEQLRMRSIHPLDLSQLSKMTGTEYMLNEVM
        MATPPPP  APPG  NFEGGP PAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFALSPFYDWTCNNEQLRMRSIHPLDLSQLSKMTG EYMLNEVM
Subjt:  MATPPPP-AAPPGIANFEGGPPPAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFALSPFYDWTCNNEQLRMRSIHPLDLSQLSKMTGTEYMLNEVM

Query:  EPHLFVFRKQKRDGPEKVTPMLTYYILDGSIYQAPQLCNVFAARVSRALYYISKAFTTASSKLEKIGYVDSENESEEVKPGKETINFKEVKRVDHILASL
        EPHLFVFRKQKRDGPEKVTPMLTYYILDGSIYQAPQLCNVFAARVSRALYYISKAFTTASSKLEKIGYVDSENESEEVKP KETINFKEVKRVDHILASL
Subjt:  EPHLFVFRKQKRDGPEKVTPMLTYYILDGSIYQAPQLCNVFAARVSRALYYISKAFTTASSKLEKIGYVDSENESEEVKPGKETINFKEVKRVDHILASL

Query:  QRKLPPAPPPPPFPEGYVPAPTAEVEKGPENQPAESQQPSADPIIDQGPAKRMKF
        QRKLPPAPPPPPFPEGY PAPTA+ EKGPENQ  ESQQPSADPIIDQGPAKRMKF
Subjt:  QRKLPPAPPPPPFPEGYVPAPTAEVEKGPENQPAESQQPSADPIIDQGPAKRMKF

A0A6J1D4P7 Mediator of RNA polymerase II transcription subunit 64.4e-14199.61Show/hide
Query:  MATPPPPAAPPGIANFEGGPPPAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFALSPFYDWTCNNEQLRMRSIHPLDLSQLSKMTGTEYMLNEVME
        MATPPPPAAPPGIANFEGGPPPAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFALSPFYDWTCNNEQLRMRSIHPLDLSQLSKMTGTEYMLNEVME
Subjt:  MATPPPPAAPPGIANFEGGPPPAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFALSPFYDWTCNNEQLRMRSIHPLDLSQLSKMTGTEYMLNEVME

Query:  PHLFVFRKQKRDGPEKVTPMLTYYILDGSIYQAPQLCNVFAARVSRALYYISKAFTTASSKLEKIGYVDSENESEEVKPGKETINFKEVKRVDHILASLQ
        PHLFVFRKQKRDGPEKVTPMLTYYILDGSIYQAPQLCNVFAARVSRALYYISKAFTTASSKLEKIGYVDSENESEEVKPGKETINFKEVKRVDHILASLQ
Subjt:  PHLFVFRKQKRDGPEKVTPMLTYYILDGSIYQAPQLCNVFAARVSRALYYISKAFTTASSKLEKIGYVDSENESEEVKPGKETINFKEVKRVDHILASLQ

Query:  RKLPPAPPPPPFPEGYVPAPTAEVEKGPENQPAESQQPSADPIIDQGPAKRMKF
        RKLPPAPPPPPFPEGYVPAPTAEVEKGPENQPAE QQPSADPIIDQGPAKRMKF
Subjt:  RKLPPAPPPPPFPEGYVPAPTAEVEKGPENQPAESQQPSADPIIDQGPAKRMKF

A0A6J1G911 Mediator of RNA polymerase II transcription subunit 62.3e-12992.91Show/hide
Query:  MATPPPPAAPPGIANFEGGPPPAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFALSPFYDWTCNNEQLRMRSIHPLDLSQLSKMTGTEYMLNEVME
        MATPP    PPGI NFEGGPP AAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFALSPFYDWTCNNEQLRMRSIHPLDLSQLSKMTG EYMLNEVME
Subjt:  MATPPPPAAPPGIANFEGGPPPAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFALSPFYDWTCNNEQLRMRSIHPLDLSQLSKMTGTEYMLNEVME

Query:  PHLFVFRKQKRDGPEKVTPMLTYYILDGSIYQAPQLCNVFAARVSRALYYISKAFTTASSKLEKIGYVDSENESEEVKPGKETINFKEVKRVDHILASLQ
        PHLFVFRKQKRDGPEKVTPMLTYYILDGSIYQAPQLCNVFAARVSRALYYISKAFTTASSKLEKIGYVDSENESEEVKP KETI+FKEVKRVD ILASLQ
Subjt:  PHLFVFRKQKRDGPEKVTPMLTYYILDGSIYQAPQLCNVFAARVSRALYYISKAFTTASSKLEKIGYVDSENESEEVKPGKETINFKEVKRVDHILASLQ

Query:  RKLPPAPPPPPFPEGYVPAPTAEVEKGPENQPAESQQPSADPIIDQGPAKRMKF
        RKLPPAPPPPPFPEGYVPAP +E EKGPE+Q  E QQP+ADPIIDQGPAKRMKF
Subjt:  RKLPPAPPPPPFPEGYVPAPTAEVEKGPENQPAESQQPSADPIIDQGPAKRMKF

SwissProt top hitse value%identityAlignment
F4IXJ7 Mediator of RNA polymerase II transcription subunit 63.3e-8562.23Show/hide
Query:  PPPAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFALSPFYDWTCNNEQLRMRSIHPLDLSQLSKMTGTEYMLNEVMEPHLFVFRKQKRDGPEKVTP
        PPP   QPPGTDMTGI FRDQLW+N+YPLDRN +FDYFALSPFYD TCNNE LR RSIHPLDLS LSKMTG EYML +  EP+LFVFRKQKRDGPEKVTP
Subjt:  PPPAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFALSPFYDWTCNNEQLRMRSIHPLDLSQLSKMTGTEYMLNEVMEPHLFVFRKQKRDGPEKVTP

Query:  MLTYYILDGSIYQAPQLCNVFAARVSRALYYISKAFTTASSKLEKI-------------------------------------GY------VDSENESEE
        MLTYYILDGSIYQAPQLC+VFAARVSR +Y ISKAFT A+SKLE I                                     G+       +++NE  E
Subjt:  MLTYYILDGSIYQAPQLCNVFAARVSRALYYISKAFTTASSKLEKI-------------------------------------GY------VDSENESEE

Query:  VKPGKETINFKEVKRVDHILASLQRKLPPAPPPPPFPEGYVPAPTAEVEKGPENQPAESQQPSADPIIDQGPAKRMKF
         KP  ET++ KE+KRVD IL SL RKL P PPPPPFPEGYV       ++    Q  ESQ P  DPIIDQGPAKRMKF
Subjt:  VKPGKETINFKEVKRVDHILASLQRKLPPAPPPPPFPEGYVPAPTAEVEKGPENQPAESQQPSADPIIDQGPAKRMKF

Q3SZY9 Mediator of RNA polymerase II transcription subunit 62.3e-2234.44Show/hide
Query:  DMTGICFRDQLWLNTYPLDRNLVFDYFA--LSPFYDWTCNNEQLRMRSIHPLDLSQLSKMTGTEYMLNEVMEPHLFVFRKQKRDGPEKVTPMLTYYILDG
        ++ GI + D  W+    L+   V DYF+   +PFYD TCNNE ++M+    L L  L++M G EY+L    EP LF+ RKQ+R  P +V P+  YYI+ G
Subjt:  DMTGICFRDQLWLNTYPLDRNLVFDYFA--LSPFYDWTCNNEQLRMRSIHPLDLSQLSKMTGTEYMLNEVMEPHLFVFRKQKRDGPEKVTPMLTYYILDG

Query:  SIYQAPQLCNVFAARVSRALYYISKAFTTASSKLE---KIGY---VDSENESEEVKP----GKETINFKEVKRVDHILASLQRKLPPAPPPPPFPEGYVP
         IYQAP L +V  +RV  A++ I  AF  A S        GY        E ++VKP     +E  +  + +RVD +L  L++K PP        E  VP
Subjt:  SIYQAPQLCNVFAARVSRALYYISKAFTTASSKLE---KIGY---VDSENESEEVKP----GKETINFKEVKRVDHILASLQRKLPPAPPPPPFPEGYVP

Query:  APTAEVEKGPENQPAESQQPSADPIIDQ------GPAKRMK
            + E  P  +  +S++      + Q       P KRM+
Subjt:  APTAEVEKGPENQPAESQQPSADPIIDQ------GPAKRMK

Q54PN3 Putative mediator of RNA polymerase II transcription subunit 61.6e-2637.44Show/hide
Query:  DMTGICFRDQLWLNTYPLDRNLVFDYFALSPFYDWTCNNEQLRMRSIHPLDLSQLSKMTGTEYMLNEVMEPHLFVFRKQKRDGPEKVTPMLTYYILDGSI
        D+T + +RD LWL  YPL+   +  YF+ S FYD  CNNEQL+M+    LDLS L  M G EY L + +EP  F+  KQ R  P  V     YY+++G+I
Subjt:  DMTGICFRDQLWLNTYPLDRNLVFDYFALSPFYDWTCNNEQLRMRSIHPLDLSQLSKMTGTEYMLNEVMEPHLFVFRKQKRDGPEKVTPMLTYYILDGSI

Query:  YQAPQLCNVFAARVSRALYYISKAFTTASSKLE---KIGY---VDSENESEEVK-PGKETINFKEVKRVDHILASLQRKLPPAPPPPPFPEGYVPAPTAE
        YQAP+L  VF +RVS+++ ++S+AF + SS +      GY   +D  N+ E+ K         ++ KR+D ++ SL  K P    P   P+      T  
Subjt:  YQAPQLCNVFAARVSRALYYISKAFTTASSKLE---KIGY---VDSENESEEVK-PGKETINFKEVKRVDHILASLQRKLPPAPPPPPFPEGYVPAPTAE

Query:  VEKGPENQPAE
            P+ QP++
Subjt:  VEKGPENQPAE

Q7Q107 Mediator of RNA polymerase II transcription subunit 62.0e-2134.47Show/hide
Query:  ICFRDQLWLNTYPLDRNLVFDYFA--LSPFYDWTCNNEQLRMRSIHPLDLSQLSKMTGTEYMLNEVMEPHLFVFRKQKRDGPEKVTPMLTYYILDGSIYQ
        I + D  W+    L+   V DYF+   +PFYD TCNNE +RM+      L  L+ MTG EY+   V +P L+V RKQ R  P + TPM  YYI+ G++YQ
Subjt:  ICFRDQLWLNTYPLDRNLVFDYFA--LSPFYDWTCNNEQLRMRSIHPLDLSQLSKMTGTEYMLNEVMEPHLFVFRKQKRDGPEKVTPMLTYYILDGSIYQ

Query:  APQLCNVFAARVSRALYYISKAFTTASSKLE---KIGYVDSENESEEVKPGKETINFKEV------------KRVDHILASLQRKLP-PAPPPPPFPEGY
        AP L +VF +R+   ++++  AF  ASS        GY    + ++ +    +T   KE             +RVD +L  L RK P P P     P G 
Subjt:  APQLCNVFAARVSRALYYISKAFTTASSKLE---KIGYVDSENESEEVKPGKETINFKEV------------KRVDHILASLQRKLP-PAPPPPPFPEGY

Query:  VPAPTAEVEKGPENQPAESQQPSAD-PIIDQGPAK
         P+ TA           +S    AD  +I Q P +
Subjt:  VPAPTAEVEKGPENQPAESQQPSAD-PIIDQGPAK

Q921D4 Mediator of RNA polymerase II transcription subunit 62.1e-2335.68Show/hide
Query:  DMTGICFRDQLWLNTYPLDRNLVFDYFA--LSPFYDWTCNNEQLRMRSIHPLDLSQLSKMTGTEYMLNEVMEPHLFVFRKQKRDGPEKVTPMLTYYILDG
        ++ GI + D  W+    L+   V DYF+   +PFYD TCNNE ++M+    L L  L++M G EY+L    EP LF+ RKQ+R  P +V P+  YYI+ G
Subjt:  DMTGICFRDQLWLNTYPLDRNLVFDYFA--LSPFYDWTCNNEQLRMRSIHPLDLSQLSKMTGTEYMLNEVMEPHLFVFRKQKRDGPEKVTPMLTYYILDG

Query:  SIYQAPQLCNVFAARVSRALYYISKAFTTASSKLE---KIGY---VDSENESEEVKP----GKETINFKEVKRVDHILASLQRKLPPAPPPPPFPEGYVP
         IYQAP L +V  +RV  A++ I  AF  A S        GY        E E+VKP     +E  +  + +RVD +L  L++K PP        E  VP
Subjt:  SIYQAPQLCNVFAARVSRALYYISKAFTTASSKLE---KIGY---VDSENESEEVKP----GKETINFKEVKRVDHILASLQRKLPPAPPPPPFPEGYVP

Query:  APTAEVEKGPENQPAESQQPSADPIIDQ------GPAKRMK
           A+ E  P  +  +S++  +   I Q       P KRM+
Subjt:  APTAEVEKGPENQPAESQQPSADPIIDQ------GPAKRMK

Arabidopsis top hitse value%identityAlignment
AT3G21350.1 RNA polymerase transcriptional regulation mediator-related7.5e-9373.84Show/hide
Query:  PPPAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFALSPFYDWTCNNEQLRMRSIHPLDLSQLSKMTGTEYMLNEVMEPHLFVFRKQKRDGPEKVTP
        PPP   QPPGTDMTGI FRDQLW+N+YPLDRN +FDYFALSPFYD TCNNE LR RSIHPLDLS LSKMTG EYML +  EP+LFVFRKQKRDGPEKVTP
Subjt:  PPPAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFALSPFYDWTCNNEQLRMRSIHPLDLSQLSKMTGTEYMLNEVMEPHLFVFRKQKRDGPEKVTP

Query:  MLTYYILDGSIYQAPQLCNVFAARVSRALYYISKAFTTASSKLEKIGYVDSENESE--EVKPGKETINFKEVKRVDHILASLQRKLPPAPPPPPFPEGYV
        MLTYYILDGSIYQAPQLC+VFAARVSR +Y ISKAFT A+SKLE I  VD+EN++E  E KP  ET++ KE+KRVD IL SL RKL P PPPPPFPEGYV
Subjt:  MLTYYILDGSIYQAPQLCNVFAARVSRALYYISKAFTTASSKLEKIGYVDSENESE--EVKPGKETINFKEVKRVDHILASLQRKLPPAPPPPPFPEGYV

Query:  PAPTAEVEKGPENQPAESQQPSADPIIDQGPAKRMKF
               ++    Q  ESQ P  DPIIDQGPAKRMKF
Subjt:  PAPTAEVEKGPENQPAESQQPSADPIIDQGPAKRMKF

AT3G21350.2 RNA polymerase transcriptional regulation mediator-related2.3e-8662.23Show/hide
Query:  PPPAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFALSPFYDWTCNNEQLRMRSIHPLDLSQLSKMTGTEYMLNEVMEPHLFVFRKQKRDGPEKVTP
        PPP   QPPGTDMTGI FRDQLW+N+YPLDRN +FDYFALSPFYD TCNNE LR RSIHPLDLS LSKMTG EYML +  EP+LFVFRKQKRDGPEKVTP
Subjt:  PPPAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFALSPFYDWTCNNEQLRMRSIHPLDLSQLSKMTGTEYMLNEVMEPHLFVFRKQKRDGPEKVTP

Query:  MLTYYILDGSIYQAPQLCNVFAARVSRALYYISKAFTTASSKLEKI-------------------------------------GY------VDSENESEE
        MLTYYILDGSIYQAPQLC+VFAARVSR +Y ISKAFT A+SKLE I                                     G+       +++NE  E
Subjt:  MLTYYILDGSIYQAPQLCNVFAARVSRALYYISKAFTTASSKLEKI-------------------------------------GY------VDSENESEE

Query:  VKPGKETINFKEVKRVDHILASLQRKLPPAPPPPPFPEGYVPAPTAEVEKGPENQPAESQQPSADPIIDQGPAKRMKF
         KP  ET++ KE+KRVD IL SL RKL P PPPPPFPEGYV       ++    Q  ESQ P  DPIIDQGPAKRMKF
Subjt:  VKPGKETINFKEVKRVDHILASLQRKLPPAPPPPPFPEGYVPAPTAEVEKGPENQPAESQQPSADPIIDQGPAKRMKF


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCAACTCCACCGCCACCGGCGGCCCCGCCGGGGATCGCGAATTTTGAGGGGGGACCGCCGCCGGCAGCGCCTCAGCCTCCAGGCACGGACATGACCGGAATTTGCTT
CAGAGACCAGCTCTGGCTCAATACTTACCCTCTTGATCGCAATTTGGTTTTTGATTACTTCGCCTTGTCCCCTTTCTACGACTGGACTTGTAACAACGAACAACTCAGAA
TGCGCTCCATTCACCCCCTTGATCTCTCTCAACTTTCAAAAATGACAGGTACAGAGTACATGCTGAATGAAGTTATGGAGCCTCACCTTTTCGTTTTCCGAAAGCAAAAG
AGGGATGGCCCTGAGAAAGTCACACCAATGCTGACTTACTATATCTTGGATGGTTCAATTTACCAGGCGCCTCAGCTTTGCAATGTTTTTGCTGCCCGAGTTAGCCGGGC
GCTATATTACATATCGAAGGCCTTTACCACTGCTTCCTCAAAGTTGGAGAAGATCGGATATGTTGATTCTGAAAATGAGAGTGAAGAAGTCAAACCTGGAAAAGAGACCA
TAAACTTTAAGGAAGTAAAGCGAGTTGATCATATTCTTGCATCATTACAGCGCAAGCTGCCACCTGCTCCACCACCCCCACCATTTCCTGAAGGTTATGTTCCTGCTCCC
ACAGCAGAGGTAGAAAAAGGCCCTGAAAACCAGCCAGCAGAATCGCAACAGCCTTCAGCAGATCCCATTATTGATCAGGGCCCAGCTAAAAGGATGAAATTT
mRNA sequenceShow/hide mRNA sequence
ATGGCAACTCCACCGCCACCGGCGGCCCCGCCGGGGATCGCGAATTTTGAGGGGGGACCGCCGCCGGCAGCGCCTCAGCCTCCAGGCACGGACATGACCGGAATTTGCTT
CAGAGACCAGCTCTGGCTCAATACTTACCCTCTTGATCGCAATTTGGTTTTTGATTACTTCGCCTTGTCCCCTTTCTACGACTGGACTTGTAACAACGAACAACTCAGAA
TGCGCTCCATTCACCCCCTTGATCTCTCTCAACTTTCAAAAATGACAGGTACAGAGTACATGCTGAATGAAGTTATGGAGCCTCACCTTTTCGTTTTCCGAAAGCAAAAG
AGGGATGGCCCTGAGAAAGTCACACCAATGCTGACTTACTATATCTTGGATGGTTCAATTTACCAGGCGCCTCAGCTTTGCAATGTTTTTGCTGCCCGAGTTAGCCGGGC
GCTATATTACATATCGAAGGCCTTTACCACTGCTTCCTCAAAGTTGGAGAAGATCGGATATGTTGATTCTGAAAATGAGAGTGAAGAAGTCAAACCTGGAAAAGAGACCA
TAAACTTTAAGGAAGTAAAGCGAGTTGATCATATTCTTGCATCATTACAGCGCAAGCTGCCACCTGCTCCACCACCCCCACCATTTCCTGAAGGTTATGTTCCTGCTCCC
ACAGCAGAGGTAGAAAAAGGCCCTGAAAACCAGCCAGCAGAATCGCAACAGCCTTCAGCAGATCCCATTATTGATCAGGGCCCAGCTAAAAGGATGAAATTT
Protein sequenceShow/hide protein sequence
MATPPPPAAPPGIANFEGGPPPAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFALSPFYDWTCNNEQLRMRSIHPLDLSQLSKMTGTEYMLNEVMEPHLFVFRKQK
RDGPEKVTPMLTYYILDGSIYQAPQLCNVFAARVSRALYYISKAFTTASSKLEKIGYVDSENESEEVKPGKETINFKEVKRVDHILASLQRKLPPAPPPPPFPEGYVPAP
TAEVEKGPENQPAESQQPSADPIIDQGPAKRMKF