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MS013176 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS013176
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionF-box family protein
Genome locationscaffold459:948328..948501
RNA-Seq ExpressionMS013176
SyntenyMS013176
Gene Ontology termsGO:0005515 - protein binding (molecular function)
InterPro domainsIPR001810 - F-box domain
IPR036047 - F-box-like domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6581864.1 Glycosyltransferase BC10, partial [Cucurbita argyrosperma subsp. sororia]3.9e-1589.36Show/hide
Query:  MDLISELPDPILQHILSFLPIKKTVQTTVLSKRWSHLWSTFPSLEFD
        MDLISELPDPILQHILSFLPIK+ VQT +LSKRWSHLW TFPSLEFD
Subjt:  MDLISELPDPILQHILSFLPIKKTVQTTVLSKRWSHLWSTFPSLEFD

KAG7018303.1 putative F-box/LRR-repeat protein, partial [Cucurbita argyrosperma subsp. argyrosperma]3.9e-1589.36Show/hide
Query:  MDLISELPDPILQHILSFLPIKKTVQTTVLSKRWSHLWSTFPSLEFD
        MDLISELPDPILQHILSFLPIK+ VQT +LSKRWSHLW TFPSLEFD
Subjt:  MDLISELPDPILQHILSFLPIKKTVQTTVLSKRWSHLWSTFPSLEFD

XP_022955936.1 putative F-box/LRR-repeat protein At3g18150 [Cucurbita moschata]3.9e-1589.36Show/hide
Query:  MDLISELPDPILQHILSFLPIKKTVQTTVLSKRWSHLWSTFPSLEFD
        MDLISELPDPILQHILSFLPIK+ VQT +LSKRWSHLW TFPSLEFD
Subjt:  MDLISELPDPILQHILSFLPIKKTVQTTVLSKRWSHLWSTFPSLEFD

XP_023526891.1 F-box/LRR-repeat protein At3g03360-like [Cucurbita pepo subsp. pepo]3.9e-1589.36Show/hide
Query:  MDLISELPDPILQHILSFLPIKKTVQTTVLSKRWSHLWSTFPSLEFD
        MDLISELPDPILQHILSFLPIK+ VQT +LSKRWSHLW TFPSLEFD
Subjt:  MDLISELPDPILQHILSFLPIKKTVQTTVLSKRWSHLWSTFPSLEFD

XP_038904992.1 F-box/LRR-repeat protein At3g03360-like [Benincasa hispida]8.7e-1587.23Show/hide
Query:  MDLISELPDPILQHILSFLPIKKTVQTTVLSKRWSHLWSTFPSLEFD
        MDLISELPDPILQHILSFLPIK+ VQ T+LSKRWSHLW TFPS EFD
Subjt:  MDLISELPDPILQHILSFLPIKKTVQTTVLSKRWSHLWSTFPSLEFD

TrEMBL top hitse value%identityAlignment
A0A0A0LGC3 F-box domain-containing protein6.1e-1482.98Show/hide
Query:  MDLISELPDPILQHILSFLPIKKTVQTTVLSKRWSHLWSTFPSLEFD
        MDLISELPDPILQHILSFL IK+ +QTT+LSKRW HLW TFPS EFD
Subjt:  MDLISELPDPILQHILSFLPIKKTVQTTVLSKRWSHLWSTFPSLEFD

A0A1S3BH70 putative F-box/LRR-repeat protein At3g181509.4e-1582.98Show/hide
Query:  MDLISELPDPILQHILSFLPIKKTVQTTVLSKRWSHLWSTFPSLEFD
        MDLISELPDPILQHILSFLP+K+ +QTT+LSKRW HLW TFPS EFD
Subjt:  MDLISELPDPILQHILSFLPIKKTVQTTVLSKRWSHLWSTFPSLEFD

A0A5A7V5P4 Putative F-box/LRR-repeat protein9.4e-1582.98Show/hide
Query:  MDLISELPDPILQHILSFLPIKKTVQTTVLSKRWSHLWSTFPSLEFD
        MDLISELPDPILQHILSFLP+K+ +QTT+LSKRW HLW TFPS EFD
Subjt:  MDLISELPDPILQHILSFLPIKKTVQTTVLSKRWSHLWSTFPSLEFD

A0A6J1GV77 putative F-box/LRR-repeat protein At3g181501.9e-1589.36Show/hide
Query:  MDLISELPDPILQHILSFLPIKKTVQTTVLSKRWSHLWSTFPSLEFD
        MDLISELPDPILQHILSFLPIK+ VQT +LSKRWSHLW TFPSLEFD
Subjt:  MDLISELPDPILQHILSFLPIKKTVQTTVLSKRWSHLWSTFPSLEFD

A0A7N2LKT9 F-box domain-containing protein4.8e-1170.21Show/hide
Query:  MDLISELPDPILQHILSFLPIKKTVQTTVLSKRWSHLWSTFPSLEFD
        MD ISELP+PILQHILSFLP K+  Q  +L+KRW H+WSTFP L FD
Subjt:  MDLISELPDPILQHILSFLPIKKTVQTTVLSKRWSHLWSTFPSLEFD

SwissProt top hitse value%identityAlignment
Q9FX89 Putative F-box protein At1g496103.3e-0959.57Show/hide
Query:  MDLISELPDPILQHILSFLPIKKTVQTTVLSKRWSHLWSTFPSLEFD
        +D IS LPD ILQ  LS +P K  ++T+VLSKRW H+WS  PSL+FD
Subjt:  MDLISELPDPILQHILSFLPIKKTVQTTVLSKRWSHLWSTFPSLEFD

Q9LV26 Putative F-box/LRR-repeat protein At3g181508.8e-1059.57Show/hide
Query:  MDLISELPDPILQHILSFLPIKKTVQTTVLSKRWSHLWSTFPSLEFD
        +D IS LPD ILQHILSF+P K  + T++LSKRW H+W   PSL F+
Subjt:  MDLISELPDPILQHILSFLPIKKTVQTTVLSKRWSHLWSTFPSLEFD

Q9LYZ2 Putative F-box/LRR-repeat protein At5g029302.0e-0953.19Show/hide
Query:  MDLISELPDPILQHILSFLPIKKTVQTTVLSKRWSHLWSTFPSLEFD
        +D IS+LPD +LQHI S++P +  ++T+VLSKRW H+WS  P L F+
Subjt:  MDLISELPDPILQHILSFLPIKKTVQTTVLSKRWSHLWSTFPSLEFD

Q9LYZ4 F-box/LRR-repeat protein At5g029103.3e-0957.45Show/hide
Query:  MDLISELPDPILQHILSFLPIKKTVQTTVLSKRWSHLWSTFPSLEFD
        MD IS LPD IL HILS +P K  ++T++LSKRW ++WS  PSL  D
Subjt:  MDLISELPDPILQHILSFLPIKKTVQTTVLSKRWSHLWSTFPSLEFD

Q9M3B7 Putative F-box/LRR-repeat protein At3g491501.1e-0946.55Show/hide
Query:  CFSKVQRNQNPMDLISELPDPILQHILSFLPIKKTVQTTVLSKRWSHLWSTFPSLEFD
        C   +  + +  D+IS+LP+ ++ HILSFLPI+ +  T+VLSK+W HL++  P+LEFD
Subjt:  CFSKVQRNQNPMDLISELPDPILQHILSFLPIKKTVQTTVLSKRWSHLWSTFPSLEFD

Arabidopsis top hitse value%identityAlignment
AT1G49610.1 F-box family protein2.4e-1059.57Show/hide
Query:  MDLISELPDPILQHILSFLPIKKTVQTTVLSKRWSHLWSTFPSLEFD
        +D IS LPD ILQ  LS +P K  ++T+VLSKRW H+WS  PSL+FD
Subjt:  MDLISELPDPILQHILSFLPIKKTVQTTVLSKRWSHLWSTFPSLEFD

AT3G18150.1 RNI-like superfamily protein6.2e-1159.57Show/hide
Query:  MDLISELPDPILQHILSFLPIKKTVQTTVLSKRWSHLWSTFPSLEFD
        +D IS LPD ILQHILSF+P K  + T++LSKRW H+W   PSL F+
Subjt:  MDLISELPDPILQHILSFLPIKKTVQTTVLSKRWSHLWSTFPSLEFD

AT3G49150.1 F-box/RNI-like superfamily protein8.2e-1146.55Show/hide
Query:  CFSKVQRNQNPMDLISELPDPILQHILSFLPIKKTVQTTVLSKRWSHLWSTFPSLEFD
        C   +  + +  D+IS+LP+ ++ HILSFLPI+ +  T+VLSK+W HL++  P+LEFD
Subjt:  CFSKVQRNQNPMDLISELPDPILQHILSFLPIKKTVQTTVLSKRWSHLWSTFPSLEFD

AT5G02910.1 F-box/RNI-like superfamily protein2.4e-1057.45Show/hide
Query:  MDLISELPDPILQHILSFLPIKKTVQTTVLSKRWSHLWSTFPSLEFD
        MD IS LPD IL HILS +P K  ++T++LSKRW ++WS  PSL  D
Subjt:  MDLISELPDPILQHILSFLPIKKTVQTTVLSKRWSHLWSTFPSLEFD

AT5G02930.1 F-box/RNI-like superfamily protein1.4e-1053.19Show/hide
Query:  MDLISELPDPILQHILSFLPIKKTVQTTVLSKRWSHLWSTFPSLEFD
        +D IS+LPD +LQHI S++P +  ++T+VLSKRW H+WS  P L F+
Subjt:  MDLISELPDPILQHILSFLPIKKTVQTTVLSKRWSHLWSTFPSLEFD


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
TGTTTCTCCAAAGTCCAAAGAAACCAAAACCCAATGGATCTGATTTCTGAACTACCAGACCCCATTTTGCAGCACATTCTTTCATTTCTCCCCATCAAAAAAACAGTTCA
AACCACTGTCTTATCCAAAAGATGGAGCCATCTCTGGTCCACCTTCCCATCTTTAGAATTTGAC
mRNA sequenceShow/hide mRNA sequence
TGTTTCTCCAAAGTCCAAAGAAACCAAAACCCAATGGATCTGATTTCTGAACTACCAGACCCCATTTTGCAGCACATTCTTTCATTTCTCCCCATCAAAAAAACAGTTCA
AACCACTGTCTTATCCAAAAGATGGAGCCATCTCTGGTCCACCTTCCCATCTTTAGAATTTGAC
Protein sequenceShow/hide protein sequence
CFSKVQRNQNPMDLISELPDPILQHILSFLPIKKTVQTTVLSKRWSHLWSTFPSLEFD