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MS013197 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS013197
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionPectinesterase
Genome locationscaffold459:1134223..1134471
RNA-Seq ExpressionMS013197
SyntenyMS013197
Gene Ontology termsGO:0042545 - cell wall modification (biological process)
GO:0045490 - pectin catabolic process (biological process)
GO:0005576 - extracellular region (cellular component)
GO:0030599 - pectinesterase activity (molecular function)
GO:0045330 - aspartyl esterase activity (molecular function)
InterPro domainsIPR000070 - Pectinesterase, catalytic
IPR011050 - Pectin lyase fold/virulence factor
IPR012334 - Pectin lyase fold


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6585822.1 putative pectinesterase/pectinesterase inhibitor 39, partial [Cucurbita argyrosperma subsp. sororia]4.0e-2167.86Show/hide
Query:  FGAIVSLDGTEDFIRISDTIAAAPNFNASRFY---QIGIYREHVELPAQKTFVSLIGDNASTTIIVDNRSNHAGFSTTSSATLS
        F + VSLDGT +F++ISD I AAPNF  +RFY   + GIY EH+E+P QKTF+SLIGDNASTTIIVDNRS  AGFST +SATL+
Subjt:  FGAIVSLDGTEDFIRISDTIAAAPNFNASRFY---QIGIYREHVELPAQKTFVSLIGDNASTTIIVDNRSNHAGFSTTSSATLS

XP_022148123.1 probable pectinesterase/pectinesterase inhibitor 39 [Momordica charantia]1.4e-2166.28Show/hide
Query:  LTFGAIVSLDGTEDFIRISDTIAAAPNFNASRFY---QIGIYREHVELPAQKTFVSLIGDNASTTIIVDNRSNHAGFSTTSSATLS
        +TF A VSLDG+ D++ ISD IAAAPN  + RFY   + GIY+EH+E+P  KTF+SLIGD+ASTT+IVD+RSNHAGFSTTSSAT +
Subjt:  LTFGAIVSLDGTEDFIRISDTIAAAPNFNASRFY---QIGIYREHVELPAQKTFVSLIGDNASTTIIVDNRSNHAGFSTTSSATLS

XP_022151324.1 pectinesterase 2-like [Momordica charantia]8.1e-2266.67Show/hide
Query:  FGAIVSLDGTEDFIRISDTIAAAPNFNASRFY---QIGIYREHVELPAQKTFVSLIGDNASTTIIVDNRSNHAGFSTTSSATLS
        F A+VSLDGT +F+R+SD  AAAPNF  +RFY   + GIY+EHVE+P QKTF++LIGD+ASTTIIVDNRSN +GFST+++ATL+
Subjt:  FGAIVSLDGTEDFIRISDTIAAAPNFNASRFY---QIGIYREHVELPAQKTFVSLIGDNASTTIIVDNRSNHAGFSTTSSATLS

XP_022951717.1 probable pectinesterase/pectinesterase inhibitor 39 [Cucurbita moschata]3.1e-2167.86Show/hide
Query:  FGAIVSLDGTEDFIRISDTIAAAPNFNASRFY---QIGIYREHVELPAQKTFVSLIGDNASTTIIVDNRSNHAGFSTTSSATLS
        F + VSLDGT +F++ISD I AAPNF  +RFY   + GIY EH+E+P QKTF+SLIGDNASTTIIVDNRS  AGFST++SATL+
Subjt:  FGAIVSLDGTEDFIRISDTIAAAPNFNASRFY---QIGIYREHVELPAQKTFVSLIGDNASTTIIVDNRSNHAGFSTTSSATLS

XP_023002625.1 probable pectinesterase/pectinesterase inhibitor 39 [Cucurbita maxima]4.0e-2166.67Show/hide
Query:  FGAIVSLDGTEDFIRISDTIAAAPNFNASRFY---QIGIYREHVELPAQKTFVSLIGDNASTTIIVDNRSNHAGFSTTSSATLS
        F + VSLDGT +F++ISD I AAPNF  +RFY   + GIY EH+E+P+QKTF+SLIGDNASTTIIVDNRS   GFST +SATL+
Subjt:  FGAIVSLDGTEDFIRISDTIAAAPNFNASRFY---QIGIYREHVELPAQKTFVSLIGDNASTTIIVDNRSNHAGFSTTSSATLS

TrEMBL top hitse value%identityAlignment
A0A6J1D381 Pectinesterase6.7e-2266.28Show/hide
Query:  LTFGAIVSLDGTEDFIRISDTIAAAPNFNASRFY---QIGIYREHVELPAQKTFVSLIGDNASTTIIVDNRSNHAGFSTTSSATLS
        +TF A VSLDG+ D++ ISD IAAAPN  + RFY   + GIY+EH+E+P  KTF+SLIGD+ASTT+IVD+RSNHAGFSTTSSAT +
Subjt:  LTFGAIVSLDGTEDFIRISDTIAAAPNFNASRFY---QIGIYREHVELPAQKTFVSLIGDNASTTIIVDNRSNHAGFSTTSSATLS

A0A6J1D863 Pectinesterase4.3e-2167.06Show/hide
Query:  TFGAIVSLDGTEDFIRISDTIAAAPNFNASRFY---QIGIYREHVELPAQKTFVSLIGDNASTTIIVDNRSNHAGFSTTSSATLS
        TF   VSLDG  +F R++D IAAAPNF+ SRFY   + G Y EHVE+PAQKTF++LIGD+ASTTIIVDNRSN  GFST +SATL+
Subjt:  TFGAIVSLDGTEDFIRISDTIAAAPNFNASRFY---QIGIYREHVELPAQKTFVSLIGDNASTTIIVDNRSNHAGFSTTSSATLS

A0A6J1DCN7 Pectinesterase3.9e-2266.67Show/hide
Query:  FGAIVSLDGTEDFIRISDTIAAAPNFNASRFY---QIGIYREHVELPAQKTFVSLIGDNASTTIIVDNRSNHAGFSTTSSATLS
        F A+VSLDGT +F+R+SD  AAAPNF  +RFY   + GIY+EHVE+P QKTF++LIGD+ASTTIIVDNRSN +GFST+++ATL+
Subjt:  FGAIVSLDGTEDFIRISDTIAAAPNFNASRFY---QIGIYREHVELPAQKTFVSLIGDNASTTIIVDNRSNHAGFSTTSSATLS

A0A6J1GIG0 Pectinesterase1.5e-2167.86Show/hide
Query:  FGAIVSLDGTEDFIRISDTIAAAPNFNASRFY---QIGIYREHVELPAQKTFVSLIGDNASTTIIVDNRSNHAGFSTTSSATLS
        F + VSLDGT +F++ISD I AAPNF  +RFY   + GIY EH+E+P QKTF+SLIGDNASTTIIVDNRS  AGFST++SATL+
Subjt:  FGAIVSLDGTEDFIRISDTIAAAPNFNASRFY---QIGIYREHVELPAQKTFVSLIGDNASTTIIVDNRSNHAGFSTTSSATLS

A0A6J1KPG6 Pectinesterase1.9e-2166.67Show/hide
Query:  FGAIVSLDGTEDFIRISDTIAAAPNFNASRFY---QIGIYREHVELPAQKTFVSLIGDNASTTIIVDNRSNHAGFSTTSSATLS
        F + VSLDGT +F++ISD I AAPNF  +RFY   + GIY EH+E+P+QKTF+SLIGDNASTTIIVDNRS   GFST +SATL+
Subjt:  FGAIVSLDGTEDFIRISDTIAAAPNFNASRFY---QIGIYREHVELPAQKTFVSLIGDNASTTIIVDNRSNHAGFSTTSSATLS

SwissProt top hitse value%identityAlignment
O48711 Probable pectinesterase/pectinesterase inhibitor 123.1e-0839.51Show/hide
Query:  IVSLDGTEDFIRISDTIAAAPNFNASR---FYQIGIYREHVELPAQKTFVSLIGDNASTTIIVDNRSNHAGFSTTSSATLS
        +V+ DGT +F  I++ I+ APN +  R   + + G+Y E++++P  KT + LIGD +  T I  NRS   G++T  SATL+
Subjt:  IVSLDGTEDFIRISDTIAAAPNFNASR---FYQIGIYREHVELPAQKTFVSLIGDNASTTIIVDNRSNHAGFSTTSSATLS

O81301 Probable pectinesterase/pectinesterase inhibitor 403.4e-0737.5Show/hide
Query:  IVSLDGTEDFIRISDTIAAAPNFNASRF---YQIGIYREHVELPAQKTFVSLIGDNASTTIIVDNRSNHAGFSTTSSATL
        +V+ +GT ++  I + I+AAPN + +RF    + G Y E++E+P +KT +  IGD    T+I  NRS   G++   SAT+
Subjt:  IVSLDGTEDFIRISDTIAAAPNFNASRF---YQIGIYREHVELPAQKTFVSLIGDNASTTIIVDNRSNHAGFSTTSSATL

Q43062 Pectinesterase/pectinesterase inhibitor PPE8B2.0e-0739.02Show/hide
Query:  AIVSLDGTEDFIRISDTIAAAPNFNASR---FYQIGIYREHVELPAQKTFVSLIGDNASTTIIVDNRSNHAGFSTTSSATLS
        AIV+ DGT +F  ++D + AAP+++  R   + + G Y+E+VE+  +K  + +IGD    TII  NRS   G++T  SAT +
Subjt:  AIVSLDGTEDFIRISDTIAAAPNFNASR---FYQIGIYREHVELPAQKTFVSLIGDNASTTIIVDNRSNHAGFSTTSSATLS

Q9LXK7 Probable pectinesterase/pectinesterase inhibitor 324.0e-0837.8Show/hide
Query:  AIVSLDGTEDFIRISDTIAAAPNFNASRF---YQIGIYREHVELPAQKTFVSLIGDNASTTIIVDNRSNHAGFSTTSSATLS
        A+V+ DGT +F  ISD + AAP+++  R+    + G+Y E+VE+  +K  + ++GD    T+I  NRS   G++T  SAT +
Subjt:  AIVSLDGTEDFIRISDTIAAAPNFNASRF---YQIGIYREHVELPAQKTFVSLIGDNASTTIIVDNRSNHAGFSTTSSATLS

Q9SMY7 Probable pectinesterase/pectinesterase inhibitor 446.9e-0837.65Show/hide
Query:  TFGAIVSLDGTEDFIRISDTIAAAPNFNASRF---YQIGIYREHVELPAQKTFVSLIGDNASTTIIVDNRSNHAGFSTTSSATLS
        T+   V+LDGT +F +I D I  AP+++++RF    + G+Y E+VE+  +K  + ++GD    T+I  NRS   G++T  SAT +
Subjt:  TFGAIVSLDGTEDFIRISDTIAAAPNFNASRF---YQIGIYREHVELPAQKTFVSLIGDNASTTIIVDNRSNHAGFSTTSSATLS

Arabidopsis top hitse value%identityAlignment
AT2G26440.1 Plant invertase/pectin methylesterase inhibitor superfamily2.2e-0939.51Show/hide
Query:  IVSLDGTEDFIRISDTIAAAPNFNASR---FYQIGIYREHVELPAQKTFVSLIGDNASTTIIVDNRSNHAGFSTTSSATLS
        +V+ DGT +F  I++ I+ APN +  R   + + G+Y E++++P  KT + LIGD +  T I  NRS   G++T  SATL+
Subjt:  IVSLDGTEDFIRISDTIAAAPNFNASR---FYQIGIYREHVELPAQKTFVSLIGDNASTTIIVDNRSNHAGFSTTSSATLS

AT2G47550.1 Plant invertase/pectin methylesterase inhibitor superfamily9.3e-0842.31Show/hide
Query:  DGTEDFIRISDTIAAAPN-FNASRFYQI-----GIYREHVELPAQKTFVSLIGDNASTTIIVDNRSNHAGFSTTSSAT
        +GT +F  I+  IAAAPN  + S  Y +     G+Y E+VE+P  K +V +IGD  + T+I  NRS   G++T +SAT
Subjt:  DGTEDFIRISDTIAAAPN-FNASRFYQI-----GIYREHVELPAQKTFVSLIGDNASTTIIVDNRSNHAGFSTTSSAT

AT3G43270.1 Plant invertase/pectin methylesterase inhibitor superfamily2.9e-0937.8Show/hide
Query:  AIVSLDGTEDFIRISDTIAAAPNFNASRF---YQIGIYREHVELPAQKTFVSLIGDNASTTIIVDNRSNHAGFSTTSSATLS
        A+V+ DGT +F  ISD + AAP+++  R+    + G+Y E+VE+  +K  + ++GD    T+I  NRS   G++T  SAT +
Subjt:  AIVSLDGTEDFIRISDTIAAAPNFNASRF---YQIGIYREHVELPAQKTFVSLIGDNASTTIIVDNRSNHAGFSTTSSATLS

AT4G02320.1 Plant invertase/pectin methylesterase inhibitor superfamily2.4e-0837.5Show/hide
Query:  IVSLDGTEDFIRISDTIAAAPNFNASRF---YQIGIYREHVELPAQKTFVSLIGDNASTTIIVDNRSNHAGFSTTSSATL
        +V+ +GT ++  I + I+AAPN + +RF    + G Y E++E+P +KT +  IGD    T+I  NRS   G++   SAT+
Subjt:  IVSLDGTEDFIRISDTIAAAPNFNASRF---YQIGIYREHVELPAQKTFVSLIGDNASTTIIVDNRSNHAGFSTTSSATL

AT4G33220.1 pectin methylesterase 444.9e-0937.65Show/hide
Query:  TFGAIVSLDGTEDFIRISDTIAAAPNFNASRF---YQIGIYREHVELPAQKTFVSLIGDNASTTIIVDNRSNHAGFSTTSSATLS
        T+   V+LDGT +F +I D I  AP+++++RF    + G+Y E+VE+  +K  + ++GD    T+I  NRS   G++T  SAT +
Subjt:  TFGAIVSLDGTEDFIRISDTIAAAPNFNASRF---YQIGIYREHVELPAQKTFVSLIGDNASTTIIVDNRSNHAGFSTTSSATLS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
TTAACTTTTGGGGCTATTGTGTCGCTGGATGGTACTGAAGATTTCATCCGAATTAGTGATACTATAGCTGCAGCACCCAACTTCAATGCGAGTAGATTTTATCAAATCGG
GATCTATAGAGAACATGTTGAACTTCCGGCACAAAAAACATTTGTATCGTTGATTGGAGACAATGCTTCTACCACTATCATTGTTGATAATCGAAGCAATCACGCCGGTT
TTTCGACTACCTCGTCTGCAACGTTAAGT
mRNA sequenceShow/hide mRNA sequence
TTAACTTTTGGGGCTATTGTGTCGCTGGATGGTACTGAAGATTTCATCCGAATTAGTGATACTATAGCTGCAGCACCCAACTTCAATGCGAGTAGATTTTATCAAATCGG
GATCTATAGAGAACATGTTGAACTTCCGGCACAAAAAACATTTGTATCGTTGATTGGAGACAATGCTTCTACCACTATCATTGTTGATAATCGAAGCAATCACGCCGGTT
TTTCGACTACCTCGTCTGCAACGTTAAGT
Protein sequenceShow/hide protein sequence
LTFGAIVSLDGTEDFIRISDTIAAAPNFNASRFYQIGIYREHVELPAQKTFVSLIGDNASTTIIVDNRSNHAGFSTTSSATLS