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MS013260 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS013260
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionDNA-directed RNA polymerase subunit beta'
Genome locationscaffold459:1641199..1641288
RNA-Seq ExpressionMS013260
SyntenyMS013260
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
QGX43666.1 RNA polymerase beta subunit [Rhizophora mucronata]8.5e-0686.67Show/hide
Query:  SSKTLPNGVIVGKVTKLYTFHYKTNKPEKD
        S+KTLPNG IVG+VTK YTFHYKTNKPEKD
Subjt:  SSKTLPNGVIVGKVTKLYTFHYKTNKPEKD
QRK25587.1 RNA polymerase beta' subunit [Rhizophora apiculata]8.5e-0686.67Show/hide
Query:  SSKTLPNGVIVGKVTKLYTFHYKTNKPEKD
        S+KTLPNG IVG+VTK YTFHYKTNKPEKD
Subjt:  SSKTLPNGVIVGKVTKLYTFHYKTNKPEKD
YP_009234631.1 RNA polymerase beta' subunit [Meliosma aff. cuneifolia Moore 333]1.1e-0586.67Show/hide
Query:  SSKTLPNGVIVGKVTKLYTFHYKTNKPEKD
        +SKTLPNG IVG+VTK YTFHYKTNKPEKD
Subjt:  SSKTLPNGVIVGKVTKLYTFHYKTNKPEKD
YP_009654938.1 RpoC1 [Rhizophora stylosa]8.5e-0686.67Show/hide
Query:  SSKTLPNGVIVGKVTKLYTFHYKTNKPEKD
        S+KTLPNG IVG+VTK YTFHYKTNKPEKD
Subjt:  SSKTLPNGVIVGKVTKLYTFHYKTNKPEKD
YP_009752741.1 RNA polymerase beta' subunit [Cyclantheropsis parviflora]1.1e-0586.67Show/hide
Query:  SSKTLPNGVIVGKVTKLYTFHYKTNKPEKD
        S+KTLPNG IVG+VTK YTFHYKTNKPEKD
Subjt:  SSKTLPNGVIVGKVTKLYTFHYKTNKPEKD
TrEMBL top hitse value%identityAlignment
A0A4P8D2D1 DNA-directed RNA polymerase subunit beta'4.1e-0686.67Show/hide
Query:  SSKTLPNGVIVGKVTKLYTFHYKTNKPEKD
        S+KTLPNG IVG+VTK YTFHYKTNKPEKD
Subjt:  SSKTLPNGVIVGKVTKLYTFHYKTNKPEKD
A0A6B9DDJ9 DNA-directed RNA polymerase subunit gamma4.1e-0686.67Show/hide
Query:  SSKTLPNGVIVGKVTKLYTFHYKTNKPEKD
        S+KTLPNG IVG+VTK YTFHYKTNKPEKD
Subjt:  SSKTLPNGVIVGKVTKLYTFHYKTNKPEKD
A0A6C0X6I7 DNA-directed RNA polymerase subunit beta'4.1e-0686.67Show/hide
Query:  SSKTLPNGVIVGKVTKLYTFHYKTNKPEKD
        S+KTLPNG IVG+VTK YTFHYKTNKPEKD
Subjt:  SSKTLPNGVIVGKVTKLYTFHYKTNKPEKD
A0A6H0ESX8 DNA-directed RNA polymerase subunit beta'5.4e-0686.67Show/hide
Query:  SSKTLPNGVIVGKVTKLYTFHYKTNKPEKD
        S+KTLPNG IVG+VTK YTFHYKTNKPEKD
Subjt:  SSKTLPNGVIVGKVTKLYTFHYKTNKPEKD
D3WC15 DNA-directed RNA polymerase subunit beta'5.4e-0686.67Show/hide
Query:  SSKTLPNGVIVGKVTKLYTFHYKTNKPEKD
        +SKTLPNG IVG+VTK YTFHYKTNKPEKD
Subjt:  SSKTLPNGVIVGKVTKLYTFHYKTNKPEKD
SwissProt top hitse value%identityAlignment
B2LMI1 DNA-directed RNA polymerase subunit beta'9.5e-0883.33Show/hide
Query:  SSKTLPNGVIVGKVTKLYTFHYKTNKPEKD
        S K LPNG IVG+VTK YTFHYKTNKPEKD
Subjt:  SSKTLPNGVIVGKVTKLYTFHYKTNKPEKD
Q1KXX1 DNA-directed RNA polymerase subunit beta'9.5e-0883.33Show/hide
Query:  SSKTLPNGVIVGKVTKLYTFHYKTNKPEKD
        S K LPNG IVG+VTK YTFHYKTNKPEKD
Subjt:  SSKTLPNGVIVGKVTKLYTFHYKTNKPEKD
Q4VZP2 DNA-directed RNA polymerase subunit beta'3.3e-0883.33Show/hide
Query:  SSKTLPNGVIVGKVTKLYTFHYKTNKPEKD
        ++KTLPNG IVG+VTK YTFHYKTNKPEKD
Subjt:  SSKTLPNGVIVGKVTKLYTFHYKTNKPEKD
Q56P12 DNA-directed RNA polymerase subunit beta'9.5e-0883.33Show/hide
Query:  SSKTLPNGVIVGKVTKLYTFHYKTNKPEKD
        S K LPNG IVG+VTK YTFHYKTNKPEKD
Subjt:  SSKTLPNGVIVGKVTKLYTFHYKTNKPEKD
Q7YJX9 DNA-directed RNA polymerase subunit beta'4.3e-0880Show/hide
Query:  SSKTLPNGVIVGKVTKLYTFHYKTNKPEKD
        ++KTLPNG I+G+VTK YTFHYKTNKPEKD
Subjt:  SSKTLPNGVIVGKVTKLYTFHYKTNKPEKD
Arabidopsis top hitse value%identityAlignment
ATCG00180.1 DNA-directed RNA polymerase family protein2.0e-0876.67Show/hide
Query:  SSKTLPNGVIVGKVTKLYTFHYKTNKPEKD
        ++K +PNG IVG+VTK YTFHYKTNKPEKD
Subjt:  SSKTLPNGVIVGKVTKLYTFHYKTNKPEKD

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
AGTTCAAAAACCCTACCTAATGGCGTAATAGTTGGAAAGGTAACAAAACTCTATACTTTTCATTACAAAACCAATAAACCTGAAAAAGAT
mRNA sequenceShow/hide mRNA sequence
AGTTCAAAAACCCTACCTAATGGCGTAATAGTTGGAAAGGTAACAAAACTCTATACTTTTCATTACAAAACCAATAAACCTGAAAAAGAT
Protein sequenceShow/hide protein sequence
SSKTLPNGVIVGKVTKLYTFHYKTNKPEKD