CuGenDBv2

Gene ID	MS013265
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	transportin-3 isoform X1
Genome location	scaffold459:1671499..1674046
RNA-Seq Expression	MS013265
Synteny	MS013265
Gene Ontology terms	GO:0015074 - DNA integration (biological process) GO:0003676 - nucleic acid binding (molecular function)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

XP_022148142.1 transportin-3 isoform X1 [Momordica charantia]

2.3e-56

99.1

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Query:  QVHKCATILQQLAAICSISERTDLKAVLRWESLHGWLLSAVQALPLEYLKPGEVETLVPLWLKALGDAASDYLDSKSCDELKNNYGHMQGKGGRVLKRLV
        +VHKCATILQQLAAICSISERTDLKAVLRWESLHGWLLSAVQALPLEYLKPGEVETLVPLWLKALGDAASDYLDSKSCDELKNNYGHMQGKGGRVLKRLV
Subjt:  QVHKCATILQQLAAICSISERTDLKAVLRWESLHGWLLSAVQALPLEYLKPGEVETLVPLWLKALGDAASDYLDSKSCDELKNNYGHMQGKGGRVLKRLV

Query:  REFADGHRNIP
        REFADGHRNIP
Subjt:  REFADGHRNIP

XP_022148144.1 transportin-3 isoform X2 [Momordica charantia]

1.1e-53

97.3

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Query:  QVHKCATILQQLAAICSISERTDLKAVLRWESLHGWLLSAVQALPLEYLKPGEVETLVPLWLKALGDAASDYLDSKSCDELKNNYGHMQGKGGRVLKRLV
        +VHKCATILQQLAAICSISERTDLKAVLRWESLHGWLLSA  ALPLEYLKPGEVETLVPLWLKALGDAASDYLDSKSCDELKNNYGHMQGKGGRVLKRLV
Subjt:  QVHKCATILQQLAAICSISERTDLKAVLRWESLHGWLLSAVQALPLEYLKPGEVETLVPLWLKALGDAASDYLDSKSCDELKNNYGHMQGKGGRVLKRLV

Query:  REFADGHRNIP
        REFADGHRNIP
Subjt:  REFADGHRNIP

XP_022148146.1 transportin MOS14 isoform X3 [Momordica charantia]

2.3e-56

99.1

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Query:  QVHKCATILQQLAAICSISERTDLKAVLRWESLHGWLLSAVQALPLEYLKPGEVETLVPLWLKALGDAASDYLDSKSCDELKNNYGHMQGKGGRVLKRLV
        +VHKCATILQQLAAICSISERTDLKAVLRWESLHGWLLSAVQALPLEYLKPGEVETLVPLWLKALGDAASDYLDSKSCDELKNNYGHMQGKGGRVLKRLV
Subjt:  QVHKCATILQQLAAICSISERTDLKAVLRWESLHGWLLSAVQALPLEYLKPGEVETLVPLWLKALGDAASDYLDSKSCDELKNNYGHMQGKGGRVLKRLV

Query:  REFADGHRNIP
        REFADGHRNIP
Subjt:  REFADGHRNIP

XP_022983999.1 transportin-3 isoform X1 [Cucurbita maxima]

1.9e-53

94.55

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Query:  QVHKCATILQQLAAICSISERTDLKAVLRWESLHGWLLSAVQALPLEYLKPGEVETLVPLWLKALGDAASDYLDSKSCDELKNNYGHMQGKGGRVLKRLV
        +VHKCAT+LQQLAAICS+SERTDLKAVLRWESLHGWLLSAVQALPLEYLKPGEVETLVPLWLKALGDAA DYL+SKSCDELK NYGHMQGKGGRVLKRLV
Subjt:  QVHKCATILQQLAAICSISERTDLKAVLRWESLHGWLLSAVQALPLEYLKPGEVETLVPLWLKALGDAASDYLDSKSCDELKNNYGHMQGKGGRVLKRLV

Query:  REFADGHRNI
        REFADGHRNI
Subjt:  REFADGHRNI

XP_023526726.1 transportin-3 isoform X1 [Cucurbita pepo subsp. pepo]

1.9e-53

94.55

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Query:  QVHKCATILQQLAAICSISERTDLKAVLRWESLHGWLLSAVQALPLEYLKPGEVETLVPLWLKALGDAASDYLDSKSCDELKNNYGHMQGKGGRVLKRLV
        +VHKCAT+LQQLAAICS+SERTDLKAVLRWESLHGWLLSAVQALPLEYLKPGEVETLVPLWLKALGDAA DYL+SKSCDELK NYGHMQGKGGRVLKRLV
Subjt:  QVHKCATILQQLAAICSISERTDLKAVLRWESLHGWLLSAVQALPLEYLKPGEVETLVPLWLKALGDAASDYLDSKSCDELKNNYGHMQGKGGRVLKRLV

Query:  REFADGHRNI
        REFADGHRNI
Subjt:  REFADGHRNI

TrEMBL top hits

e value

%identity

Alignment

A0A6J1D347 transportin-3 isoform X2

5.3e-54

97.3

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Query:  QVHKCATILQQLAAICSISERTDLKAVLRWESLHGWLLSAVQALPLEYLKPGEVETLVPLWLKALGDAASDYLDSKSCDELKNNYGHMQGKGGRVLKRLV
        +VHKCATILQQLAAICSISERTDLKAVLRWESLHGWLLSA  ALPLEYLKPGEVETLVPLWLKALGDAASDYLDSKSCDELKNNYGHMQGKGGRVLKRLV
Subjt:  QVHKCATILQQLAAICSISERTDLKAVLRWESLHGWLLSAVQALPLEYLKPGEVETLVPLWLKALGDAASDYLDSKSCDELKNNYGHMQGKGGRVLKRLV

Query:  REFADGHRNIP
        REFADGHRNIP
Subjt:  REFADGHRNIP

A0A6J1D496 transportin-3 isoform X1

1.1e-56

99.1

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Query:  QVHKCATILQQLAAICSISERTDLKAVLRWESLHGWLLSAVQALPLEYLKPGEVETLVPLWLKALGDAASDYLDSKSCDELKNNYGHMQGKGGRVLKRLV
        +VHKCATILQQLAAICSISERTDLKAVLRWESLHGWLLSAVQALPLEYLKPGEVETLVPLWLKALGDAASDYLDSKSCDELKNNYGHMQGKGGRVLKRLV
Subjt:  QVHKCATILQQLAAICSISERTDLKAVLRWESLHGWLLSAVQALPLEYLKPGEVETLVPLWLKALGDAASDYLDSKSCDELKNNYGHMQGKGGRVLKRLV

Query:  REFADGHRNIP
        REFADGHRNIP
Subjt:  REFADGHRNIP

A0A6J1D4H9 transportin MOS14 isoform X3

1.1e-56

99.1

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Query:  QVHKCATILQQLAAICSISERTDLKAVLRWESLHGWLLSAVQALPLEYLKPGEVETLVPLWLKALGDAASDYLDSKSCDELKNNYGHMQGKGGRVLKRLV
        +VHKCATILQQLAAICSISERTDLKAVLRWESLHGWLLSAVQALPLEYLKPGEVETLVPLWLKALGDAASDYLDSKSCDELKNNYGHMQGKGGRVLKRLV
Subjt:  QVHKCATILQQLAAICSISERTDLKAVLRWESLHGWLLSAVQALPLEYLKPGEVETLVPLWLKALGDAASDYLDSKSCDELKNNYGHMQGKGGRVLKRLV

Query:  REFADGHRNIP
        REFADGHRNIP
Subjt:  REFADGHRNIP

A0A6J1F1T5 transportin-3 isoform X1

9.0e-54

94.55

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Query:  QVHKCATILQQLAAICSISERTDLKAVLRWESLHGWLLSAVQALPLEYLKPGEVETLVPLWLKALGDAASDYLDSKSCDELKNNYGHMQGKGGRVLKRLV
        +VHKCAT+LQQLAAICS+SERTDLKAVLRWESLHGWLLSAVQALPLEYLKPGEVETLVPLWLKALGDAA DYL+SKSCDELK NYGHMQGKGGRVLKRLV
Subjt:  QVHKCATILQQLAAICSISERTDLKAVLRWESLHGWLLSAVQALPLEYLKPGEVETLVPLWLKALGDAASDYLDSKSCDELKNNYGHMQGKGGRVLKRLV

Query:  REFADGHRNI
        REFADGHRNI
Subjt:  REFADGHRNI

A0A6J1J969 transportin-3 isoform X1

9.0e-54

94.55

Show/hide

Query:  QVHKCATILQQLAAICSISERTDLKAVLRWESLHGWLLSAVQALPLEYLKPGEVETLVPLWLKALGDAASDYLDSKSCDELKNNYGHMQGKGGRVLKRLV
        +VHKCAT+LQQLAAICS+SERTDLKAVLRWESLHGWLLSAVQALPLEYLKPGEVETLVPLWLKALGDAA DYL+SKSCDELK NYGHMQGKGGRVLKRLV
Subjt:  QVHKCATILQQLAAICSISERTDLKAVLRWESLHGWLLSAVQALPLEYLKPGEVETLVPLWLKALGDAASDYLDSKSCDELKNNYGHMQGKGGRVLKRLV

Query:  REFADGHRNI
        REFADGHRNI
Subjt:  REFADGHRNI

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT1G12930.1 ARM repeat superfamily protein

1.1e-35

65.49

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Query:  QVHKCATILQQLAAICSISERTDLKAVLRWESLHGWLLSAVQALPLEYLKPGEVETLVPLWLKALGDAASDYLDSKSCDELKNNY--GHMQGKGGRVLKR
        +VHKC+TILQQLAAICS+ ERT  K +L W+SL GWL SAV ALP EYLK GE E++V  W +ALG A  DYL++KSC+   NN   GHMQGK GR LKR
Subjt:  QVHKCATILQQLAAICSISERTDLKAVLRWESLHGWLLSAVQALPLEYLKPGEVETLVPLWLKALGDAASDYLDSKSCDELKNNY--GHMQGKGGRVLKR

Query:  LVREFADGHRNIP
        LVR+FAD HRN P
Subjt:  LVREFADGHRNIP

Sequences

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CDS sequence

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CTTTATCAGGTTCACAAGTGTGCAACTATTCTGCAACAATTGGCAGCAATTTGCAGTATCAGTGAAAGAACGGATTTGAAAGCTGTCCTCCGCTGGGAATCTTTGCATGG
CTGGCTACTATCAGCGGTACAGGCTCTTCCGCTTGAATATTTAAAACCAGGGGAAGTAGAAACCCTTGTACCACTATGGTTAAAAGCCCTTGGAGATGCAGCCTCTGACT
ACCTTGACAGCAAAAGCTGTGATGAATTAAAGAATAATTATGGACATATGCAAGGGAAGGGTGGAAGAGTTCTGAAGCGTCTAGTTCGCGAATTTGCTGATGGTCACCGC
AATATCCCA

mRNA sequence

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Protein sequence

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LYQVHKCATILQQLAAICSISERTDLKAVLRWESLHGWLLSAVQALPLEYLKPGEVETLVPLWLKALGDAASDYLDSKSCDELKNNYGHMQGKGGRVLKRLVREFADGHR
NIP

MS013265 (gene) of Bitter gourd (TR) v1 genome