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MS013299 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS013299
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionLINE-1 retrotransposable element ORF2 protein
Genome locationscaffold402:155479..155820
RNA-Seq ExpressionMS013299
SyntenyMS013299
Gene Ontology termsGO:0090304 - nucleic acid metabolic process (biological process)
GO:0003824 - catalytic activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
CCA66198.1 hypothetical protein [Beta vulgaris subsp. vulgaris]1.5e-1038.84Show/hide
Query:  TLVFSADNGEILSNLKEMVCCFEVISGLN-NLAKRLVDGLNVKKRRCCILRPSSW--------GCEVGSRPLAYLGMPLGEKDNQLAFQEP-EEKVARKL
        T++F+  N E L N+K+ +  F++ SGL  N  K  + G+NV         P  W         C+VGS P+ YLGMP+G   ++L+F +P  EK+++KL
Subjt:  TLVFSADNGEILSNLKEMVCCFEVISGLN-NLAKRLVDGLNVKKRRCCILRPSSW--------GCEVGSRPLAYLGMPLGEKDNQLAFQEP-EEKVARKL

Query:  ARWKAHLLCRGGRLTLATSLL
        + WK +LL  GGRLTL  + L
Subjt:  ARWKAHLLCRGGRLTLATSLL

KAA0039950.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]2.6e-1039.13Show/hide
Query:  LVFSADNGEILSNLKEMVCCFEVISGLN-NLAKRLVDGLNVKKRRCCILRPSSWGCEVGSRPLAYLGMPLGEKDNQLAFQEPE-EKVARKLARWKAHLLC
        L+F  D  + +SNLK ++  FE  SGLN NL+K  +  +NV   R   +   SWG   G  P +YLGMPLG + +   F +   +K+ +KL+ WK   L 
Subjt:  LVFSADNGEILSNLKEMVCCFEVISGLN-NLAKRLVDGLNVKKRRCCILRPSSWGCEVGSRPLAYLGMPLGEKDNQLAFQEPE-EKVARKLARWKAHLLC

Query:  RGGRLTLATSLLSQV
        +GGR+TL  S L  +
Subjt:  RGGRLTLATSLLSQV

KAA0044556.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]3.4e-1040Show/hide
Query:  LVFSADNGEILSNLKEMVCCFEVISGLN-NLAKRLVDGLNVKKRRCCILRPSSWGCEVGSRPLAYLGMPLGEKDNQLAFQEP-EEKVARKLARWKAHLLC
        L+F  D  + +SNLK ++  FE  SGLN NL+K  +  +NV   R   +   SWG   G  P  YLGMPLG K +   F +   +K+ +KL+ WK   L 
Subjt:  LVFSADNGEILSNLKEMVCCFEVISGLN-NLAKRLVDGLNVKKRRCCILRPSSWGCEVGSRPLAYLGMPLGEKDNQLAFQEP-EEKVARKLARWKAHLLC

Query:  RGGRLTLATSLLSQV
        +GGR+TL  S L  +
Subjt:  RGGRLTLATSLLSQV

XP_009335445.1 PREDICTED: uncharacterized protein LOC103928158 [Pyrus x bretschneideri]1.8e-1140.52Show/hide
Query:  TLVFSADNGEILSNLKEMVCCFEVISGLN-NLAKRLVDGLNVKKRRCCILRPSSWGCEVGSRPLAYLGMPLGEKDNQLAFQEP-EEKVARKLARWKAHLL
        T+ F A++ ++ +NL E++  F  ISGL  N AK  + G+N    +   +   SWGCEVGS P+ YLG+PLG +   L F +P  EK+ ++L  WK   L
Subjt:  TLVFSADNGEILSNLKEMVCCFEVISGLN-NLAKRLVDGLNVKKRRCCILRPSSWGCEVGSRPLAYLGMPLGEKDNQLAFQEP-EEKVARKLARWKAHLL

Query:  CRGGRLTLATSLLSQV
         +GGRLTL   +L  +
Subjt:  CRGGRLTLATSLLSQV

XP_028122010.1 uncharacterized protein LOC114319199 [Camellia sinensis]1.5e-1040.52Show/hide
Query:  TLVFSADNGEILSNLKEMVCCFEVISGLN-NLAKRLVDGLNVKKRRCCILRPSSWGCEVGSRPLAYLGMPLGEKDNQLAFQEP-EEKVARKLARWKAHLL
        TL+F   + + + NLK ++ CFE+ISGL  N  K ++ G+ V  R         + C V S P+ YLGMPLG    +L+  EP   KV ++LA WK   L
Subjt:  TLVFSADNGEILSNLKEMVCCFEVISGLN-NLAKRLVDGLNVKKRRCCILRPSSWGCEVGSRPLAYLGMPLGEKDNQLAFQEP-EEKVARKLARWKAHLL

Query:  CRGGRLTLATSLLSQV
          GGR+TL  S+LS +
Subjt:  CRGGRLTLATSLLSQV

TrEMBL top hitse value%identityAlignment
A0A5A7T9I7 LINE-1 retrotransposable element ORF2 protein1.2e-1039.13Show/hide
Query:  LVFSADNGEILSNLKEMVCCFEVISGLN-NLAKRLVDGLNVKKRRCCILRPSSWGCEVGSRPLAYLGMPLGEKDNQLAFQEPE-EKVARKLARWKAHLLC
        L+F  D  + +SNLK ++  FE  SGLN NL+K  +  +NV   R   +   SWG   G  P +YLGMPLG + +   F +   +K+ +KL+ WK   L 
Subjt:  LVFSADNGEILSNLKEMVCCFEVISGLN-NLAKRLVDGLNVKKRRCCILRPSSWGCEVGSRPLAYLGMPLGEKDNQLAFQEPE-EKVARKLARWKAHLLC

Query:  RGGRLTLATSLLSQV
        +GGR+TL  S L  +
Subjt:  RGGRLTLATSLLSQV

A0A5D3C4J1 LINE-1 retrotransposable element ORF2 protein2.1e-1038.26Show/hide
Query:  LVFSADNGEILSNLKEMVCCFEVISGLN-NLAKRLVDGLNVKKRRCCILRPSSWGCEVGSRPLAYLGMPLGEKDNQLAF-QEPEEKVARKLARWKAHLLC
        L+F  D+   + NLK ++  F++ SGL+ NL K  +  +NV   R   +  S WG      P+ YLG+PLG K    AF +  EEK+ +KLA WK  +L 
Subjt:  LVFSADNGEILSNLKEMVCCFEVISGLN-NLAKRLVDGLNVKKRRCCILRPSSWGCEVGSRPLAYLGMPLGEKDNQLAF-QEPEEKVARKLARWKAHLLC

Query:  RGGRLTLATSLLSQV
        +GG++TL  S L+ +
Subjt:  RGGRLTLATSLLSQV

A0A5E4FWN6 Reverse transcriptase domain-containing protein (Fragment)1.6e-1039.66Show/hide
Query:  TLVFSADNGEILSNLKEMVCCFEVISGLN-NLAKRLVDGLNVKKRRCCILRPSSWGCEVGSRPLAYLGMPLGEKDNQLAFQEPE-EKVARKLARWKAHLL
        T+ F     E   NL +M+  F  +SG+  N AK  + G+N        +   SWGCEVG  P+ YLG+PLG     L F  P  +KV ++L RWK   L
Subjt:  TLVFSADNGEILSNLKEMVCCFEVISGLN-NLAKRLVDGLNVKKRRCCILRPSSWGCEVGSRPLAYLGMPLGEKDNQLAFQEPE-EKVARKLARWKAHLL

Query:  CRGGRLTLATSLLSQV
         +GGRLTL  ++LS +
Subjt:  CRGGRLTLATSLLSQV

A0A5H2XQW2 TatD related DNase1.6e-1039.66Show/hide
Query:  TLVFSADNGEILSNLKEMVCCFEVISGLN-NLAKRLVDGLNVKKRRCCILRPSSWGCEVGSRPLAYLGMPLGEKDNQLAFQEPE-EKVARKLARWKAHLL
        T+ F     E   NL +M+  F  +SG+  N AK  + G+N        +   SWGCEVG  P+ YLG+PLG     L F  P  +KV ++L RWK   L
Subjt:  TLVFSADNGEILSNLKEMVCCFEVISGLN-NLAKRLVDGLNVKKRRCCILRPSSWGCEVGSRPLAYLGMPLGEKDNQLAFQEPE-EKVARKLARWKAHLL

Query:  CRGGRLTLATSLLSQV
         +GGRLTL  ++LS +
Subjt:  CRGGRLTLATSLLSQV

F4NCL6 Reverse transcriptase domain-containing protein7.3e-1138.84Show/hide
Query:  TLVFSADNGEILSNLKEMVCCFEVISGLN-NLAKRLVDGLNVKKRRCCILRPSSW--------GCEVGSRPLAYLGMPLGEKDNQLAFQEP-EEKVARKL
        T++F+  N E L N+K+ +  F++ SGL  N  K  + G+NV         P  W         C+VGS P+ YLGMP+G   ++L+F +P  EK+++KL
Subjt:  TLVFSADNGEILSNLKEMVCCFEVISGLN-NLAKRLVDGLNVKKRRCCILRPSSW--------GCEVGSRPLAYLGMPLGEKDNQLAFQEP-EEKVARKL

Query:  ARWKAHLLCRGGRLTLATSLL
        + WK +LL  GGRLTL  + L
Subjt:  ARWKAHLLCRGGRLTLATSLL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ACATTGGTATTTTCAGCTGACAATGGGGAAATTCTATCCAACCTAAAAGAGATGGTGTGCTGTTTTGAAGTGATTTCAGGTTTGAACAACTTGGCAAAACGTCTGGTGGA
TGGTCTGAATGTTAAAAAGAGAAGGTGTTGTATCCTGCGTCCGTCTTCATGGGGTTGTGAGGTAGGCTCCAGGCCTTTAGCCTATCTAGGTATGCCGTTGGGAGAAAAAG
ACAACCAATTGGCTTTTCAGGAACCCGAGGAGAAAGTGGCAAGGAAATTAGCAAGATGGAAAGCACATCTCCTTTGTAGAGGTGGTAGATTAACACTAGCCACATCACTC
CTCTCTCAAGTA
mRNA sequenceShow/hide mRNA sequence
ACATTGGTATTTTCAGCTGACAATGGGGAAATTCTATCCAACCTAAAAGAGATGGTGTGCTGTTTTGAAGTGATTTCAGGTTTGAACAACTTGGCAAAACGTCTGGTGGA
TGGTCTGAATGTTAAAAAGAGAAGGTGTTGTATCCTGCGTCCGTCTTCATGGGGTTGTGAGGTAGGCTCCAGGCCTTTAGCCTATCTAGGTATGCCGTTGGGAGAAAAAG
ACAACCAATTGGCTTTTCAGGAACCCGAGGAGAAAGTGGCAAGGAAATTAGCAAGATGGAAAGCACATCTCCTTTGTAGAGGTGGTAGATTAACACTAGCCACATCACTC
CTCTCTCAAGTA
Protein sequenceShow/hide protein sequence
TLVFSADNGEILSNLKEMVCCFEVISGLNNLAKRLVDGLNVKKRRCCILRPSSWGCEVGSRPLAYLGMPLGEKDNQLAFQEPEEKVARKLARWKAHLLCRGGRLTLATSL
LSQV