; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MS013300 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS013300
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionTNFR/CD27/30/40/95 cysteine-rich region
Genome locationscaffold402:158759..159073
RNA-Seq ExpressionMS013300
SyntenyMS013300
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF7113717.1 hypothetical protein RHSIM_RhsimUnG0109600 [Rhododendron simsii]7.6e-2555.56Show/hide
Query:  KSRYPSVATAA-VILMTAVWLMSLPAMACPAADGKLCSNCIRDRLKLDCPACAPPLRCMAQCLWGGAPRSRCVKRCDCGGAWPTLSTCRRCMSRCKCSC
        K ++ S  TA  ++L+  VW+MS PA+ C A+DG  C NCI DR K DCP C P LRCM++CLWGG+ R++CVK+CDC   +P LS C++CMS CKCSC
Subjt:  KSRYPSVATAA-VILMTAVWLMSLPAMACPAADGKLCSNCIRDRLKLDCPACAPPLRCMAQCLWGGAPRSRCVKRCDCGGAWPTLSTCRRCMSRCKCSC

KAG5516324.1 hypothetical protein RHGRI_037142 [Rhododendron griersonianum]1.3e-2455.56Show/hide
Query:  KSRYPSVATAA-VILMTAVWLMSLPAMACPAADGKLCSNCIRDRLKLDCPACAPPLRCMAQCLWGGAPRSRCVKRCDCGGAWPTLSTCRRCMSRCKCSC
        K ++ S  TA  ++L+  VW+MS PA+ C A+DG  C NCI DR K DCP C P LRCM++CLWGG+ R++CVK+CDC   +P LS C++CMS CKCSC
Subjt:  KSRYPSVATAA-VILMTAVWLMSLPAMACPAADGKLCSNCIRDRLKLDCPACAPPLRCMAQCLWGGAPRSRCVKRCDCGGAWPTLSTCRRCMSRCKCSC

KAG6573550.1 hypothetical protein SDJN03_27437, partial [Cucurbita argyrosperma subsp. sororia]5.6e-2868.32Show/hide
Query:  RYPSVATAAVILMTAVWLMSLPAMACPAADGKLCSNCIRDRLKLDCPACAPPLRCMAQCLWGGAPRSRCVKRCDCGGAWPTLSTCRRCMSRCKCSCGLSS
        R+ S  TAAVILMTA+ L S     CP AD KLC +CIRDR+ L CPACAPPLRCMAQCLWGG  RSRCVK+CD GGAW  L +C+RCM  CKCSC  SS
Subjt:  RYPSVATAAVILMTAVWLMSLPAMACPAADGKLCSNCIRDRLKLDCPACAPPLRCMAQCLWGGAPRSRCVKRCDCGGAWPTLSTCRRCMSRCKCSCGLSS

Query:  S
        S
Subjt:  S

KAG6573554.1 hypothetical protein SDJN03_27441, partial [Cucurbita argyrosperma subsp. sororia]3.1e-2665.35Show/hide
Query:  RYPSVATAAVILMTAVWLMSLPAMACPAADGKLCSNCIRDRLKLDCPACAPPLRCMAQCLWGGAPRSRCVKRCDCGGAWPTLSTCRRCMSRCKCSCGLSS
        R+ S  TA VILMT + L S P +    AD KLC +CIRDR+ L CPACAPPLRCMAQCLWGG  RSRCVK+CD GGAW  L +C+RCM  CKCSC  SS
Subjt:  RYPSVATAAVILMTAVWLMSLPAMACPAADGKLCSNCIRDRLKLDCPACAPPLRCMAQCLWGGAPRSRCVKRCDCGGAWPTLSTCRRCMSRCKCSCGLSS

Query:  S
        S
Subjt:  S

KAG7012656.1 hypothetical protein SDJN02_25409, partial [Cucurbita argyrosperma subsp. argyrosperma]2.4e-2669.47Show/hide
Query:  TAAVILMTAVWLMSLPAMACPAADGKLCSNCIRDRLKLDCPACAPPLRCMAQCLWGGAPRSRCVKRCDCGGAWPTLSTCRRCMSRCKCSCGLSSS
        TAAVILMTA+ L S     CP  D KLC +CIRDR+ L CPACAPPLRCMAQCLWGG  RSRCVK+CD GGAW  L +C+RCM  CKCSC  SSS
Subjt:  TAAVILMTAVWLMSLPAMACPAADGKLCSNCIRDRLKLDCPACAPPLRCMAQCLWGGAPRSRCVKRCDCGGAWPTLSTCRRCMSRCKCSCGLSSS

TrEMBL top hitse value%identityAlignment
A0A0A0LW71 Uncharacterized protein5.1e-2763.83Show/hide
Query:  TAAVILMTAVWLMSLPAMACPAADGKLCSNCIRDRLKLDCPACAPPLRCMAQCLWGGAPRSRCVKRCDCGGAWPTLSTCRRCMSRCKCSCGLSS
        T  VILMTAVWL     + CP A+GK+C++CIR+R++ DCPACAPPLRCMAQCLWGG  RSRCV RCD GGAW +L++C++C+++CKC C  SS
Subjt:  TAAVILMTAVWLMSLPAMACPAADGKLCSNCIRDRLKLDCPACAPPLRCMAQCLWGGAPRSRCVKRCDCGGAWPTLSTCRRCMSRCKCSCGLSS

A0A438FE46 Uncharacterized protein2.0e-2354.08Show/hide
Query:  KSRYPSVATAAVILMTAVWLMSLPAMACPAADGKLCSNCIRDRLKLDCPACAPPLRCMAQCLWGGAPRSRCVKRCDCGGAWPTLSTCRRCMSRCKCSC
        K++  S   A ++L+   WLM  PA+ CP +DG  C +CI ++++  CP+CAP LRCMA+CLWGG  +S+CVKRCDC G  P LS C++CMSRCKCSC
Subjt:  KSRYPSVATAAVILMTAVWLMSLPAMACPAADGKLCSNCIRDRLKLDCPACAPPLRCMAQCLWGGAPRSRCVKRCDCGGAWPTLSTCRRCMSRCKCSC

A0A438JGC2 Uncharacterized protein3.8e-2253.06Show/hide
Query:  KSRYPSVATAAVILMTAVWLMSLPAMACPAADGKLCSNCIRDRLKLDCPACAPPLRCMAQCLWGGAPRSRCVKRCDCGGAWPTLSTCRRCMSRCKCSC
        K++  S   A ++L    WL   PA++CP +DG  C +CI ++++  CP+CAP L CMA+CLWGGA +S+CVKRCDC G  P LS C++CMSRCKCSC
Subjt:  KSRYPSVATAAVILMTAVWLMSLPAMACPAADGKLCSNCIRDRLKLDCPACAPPLRCMAQCLWGGAPRSRCVKRCDCGGAWPTLSTCRRCMSRCKCSC

A0A6A2XR33 Uncharacterized protein3.8e-2251.55Show/hide
Query:  RYPSVATAAVILMTAVWLMSLPAMACP-AADGKLCSNCIRDRLKLDCPACAPPLRCMAQCLWGGAPRSRCVKRCDCGGAWPTLSTCRRCMSRCKCSC
        + P+ A A ++L+  +W MS PA+ACP   DG  C +C+  ++   CP+C P +RCM +CLWGGA RS C+ RCDC    PTLS C++CMSRCKCSC
Subjt:  RYPSVATAAVILMTAVWLMSLPAMACP-AADGKLCSNCIRDRLKLDCPACAPPLRCMAQCLWGGAPRSRCVKRCDCGGAWPTLSTCRRCMSRCKCSC

A0A6P3ZGK3 uncharacterized protein LOC1074149521.7e-2258.62Show/hide
Query:  ILMTAVWLMSL-PAMACPAADGKLCSNCIRDRLKLDCPACAPPLRCMAQCLWGGAPRSRCVKRCDCGGAWPTLSTCRRCMSRCKCSC
        +++  VWLM + PA  CP +DG+ C  CI +++K  CPACAP LRCMA+CLW G+ R  C+KRCDCGG  P LS C++CMSRCKCSC
Subjt:  ILMTAVWLMSL-PAMACPAADGKLCSNCIRDRLKLDCPACAPPLRCMAQCLWGGAPRSRCVKRCDCGGAWPTLSTCRRCMSRCKCSC

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G12064.1 unknown protein4.0e-1653.12Show/hide
Query:  CSNCIRDRLKLDCPACAPPLRCMAQCLWGGAPRSRCVKRCDCG-GAWPTLSTCRRCMSRCKCSC
        C  C+ +++K DCP C P LRCMA+CLWGG  + +C   C C   A P+L  C+RC+SRCKCSC
Subjt:  CSNCIRDRLKLDCPACAPPLRCMAQCLWGGAPRSRCVKRCDCG-GAWPTLSTCRRCMSRCKCSC


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
AAATCACGATATCCCTCAGTGGCCACGGCGGCGGTGATTCTGATGACCGCCGTCTGGCTGATGAGCCTTCCGGCGATGGCTTGCCCGGCGGCGGACGGCAAGCTCTGCAG
CAACTGCATCAGAGACAGGTTGAAGCTAGATTGCCCGGCCTGCGCGCCGCCGCTCCGCTGCATGGCGCAGTGCCTGTGGGGCGGCGCTCCAAGGTCGAGGTGCGTTAAGC
GGTGCGATTGCGGCGGCGCGTGGCCGACGCTGTCTACTTGTAGGCGATGCATGTCCAGATGCAAGTGCAGTTGCGGCCTTTCTTCTTCGAGCACA
mRNA sequenceShow/hide mRNA sequence
AAATCACGATATCCCTCAGTGGCCACGGCGGCGGTGATTCTGATGACCGCCGTCTGGCTGATGAGCCTTCCGGCGATGGCTTGCCCGGCGGCGGACGGCAAGCTCTGCAG
CAACTGCATCAGAGACAGGTTGAAGCTAGATTGCCCGGCCTGCGCGCCGCCGCTCCGCTGCATGGCGCAGTGCCTGTGGGGCGGCGCTCCAAGGTCGAGGTGCGTTAAGC
GGTGCGATTGCGGCGGCGCGTGGCCGACGCTGTCTACTTGTAGGCGATGCATGTCCAGATGCAAGTGCAGTTGCGGCCTTTCTTCTTCGAGCACA
Protein sequenceShow/hide protein sequence
KSRYPSVATAAVILMTAVWLMSLPAMACPAADGKLCSNCIRDRLKLDCPACAPPLRCMAQCLWGGAPRSRCVKRCDCGGAWPTLSTCRRCMSRCKCSCGLSSSST