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MS013326 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS013326
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionTATA box-binding protein-associated factor RNA polymerase I subunit C, putative
Genome locationscaffold402:380259..380417
RNA-Seq ExpressionMS013326
SyntenyMS013326
Gene Ontology termsGO:0006360 - transcription by RNA polymerase I (biological process)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6592937.1 hypothetical protein SDJN03_12413, partial [Cucurbita argyrosperma subsp. sororia]6.5e-0964.81Show/hide
Query:  QVYDSYPRKSCNGSIQERSLTPKIHEVLCEKLKACGFDRLRSSPTL-VMLNNIS
        +V DS+ RK    S+ ER+LT +IH VLCEKLKACGFDRLRSSP L V+ N+IS
Subjt:  QVYDSYPRKSCNGSIQERSLTPKIHEVLCEKLKACGFDRLRSSPTL-VMLNNIS
XP_022147194.1 uncharacterized protein LOC111016204 [Momordica charantia]5.7e-1376.47Show/hide
Query:  QVYDSYPRKSCNGSIQERSLTPKIHEVLCEKLKACGFDRLRSSPTLVMLNN
        +V DSY RKSC  SI ERSLTP+IHEVLCEKLKACGFDRLRSSP L ++ N
Subjt:  QVYDSYPRKSCNGSIQERSLTPKIHEVLCEKLKACGFDRLRSSPTLVMLNN
XP_022959609.1 uncharacterized protein LOC111460634 [Cucurbita moschata]6.5e-0964.81Show/hide
Query:  QVYDSYPRKSCNGSIQERSLTPKIHEVLCEKLKACGFDRLRSSPTL-VMLNNIS
        +V DS+ RK    S+ ER+LT +IH VLCEKLKACGFDRLRSSP L V+ N+IS
Subjt:  QVYDSYPRKSCNGSIQERSLTPKIHEVLCEKLKACGFDRLRSSPTL-VMLNNIS
XP_023515321.1 uncharacterized protein LOC111779389 [Cucurbita pepo subsp. pepo]6.5e-0964.81Show/hide
Query:  QVYDSYPRKSCNGSIQERSLTPKIHEVLCEKLKACGFDRLRSSPTL-VMLNNIS
        +V DS+ RK    S+ ER+LT +IH VLCEKLKACGFDRLRSSP L V+ N+IS
Subjt:  QVYDSYPRKSCNGSIQERSLTPKIHEVLCEKLKACGFDRLRSSPTL-VMLNNIS
XP_031738950.1 uncharacterized protein LOC101205590 [Cucumis sativus]3.8e-0961.11Show/hide
Query:  QVYDSYPRKSCNGSIQERSLTPKIHEVLCEKLKACGFDRLRSSPTL-VMLNNIS
        +V DS+ RK C  S+ E+SL+ ++HEVLCEK+KACGFDRLRS+P L V+ N+IS
Subjt:  QVYDSYPRKSCNGSIQERSLTPKIHEVLCEKLKACGFDRLRSSPTL-VMLNNIS
TrEMBL top hitse value%identityAlignment
A0A0A0M158 Uncharacterized protein1.9e-0961.11Show/hide
Query:  QVYDSYPRKSCNGSIQERSLTPKIHEVLCEKLKACGFDRLRSSPTL-VMLNNIS
        +V DS+ RK C  S+ E+SL+ ++HEVLCEK+KACGFDRLRS+P L V+ N+IS
Subjt:  QVYDSYPRKSCNGSIQERSLTPKIHEVLCEKLKACGFDRLRSSPTL-VMLNNIS
A0A5A7TIM1 Uncharacterized protein2.7e-0859.26Show/hide
Query:  QVYDSYPRKSCNGSIQERSLTPKIHEVLCEKLKACGFDRLRSSPTL-VMLNNIS
        +V DS+ RK    S+ E+SL+ ++HEVLCEK+KACGFDRLRS+P L V+ N+IS
Subjt:  QVYDSYPRKSCNGSIQERSLTPKIHEVLCEKLKACGFDRLRSSPTL-VMLNNIS
A0A6J1D0A6 uncharacterized protein LOC1110162042.8e-1376.47Show/hide
Query:  QVYDSYPRKSCNGSIQERSLTPKIHEVLCEKLKACGFDRLRSSPTLVMLNN
        +V DSY RKSC  SI ERSLTP+IHEVLCEKLKACGFDRLRSSP L ++ N
Subjt:  QVYDSYPRKSCNGSIQERSLTPKIHEVLCEKLKACGFDRLRSSPTLVMLNN
A0A6J1H8K3 uncharacterized protein LOC1114606343.2e-0964.81Show/hide
Query:  QVYDSYPRKSCNGSIQERSLTPKIHEVLCEKLKACGFDRLRSSPTL-VMLNNIS
        +V DS+ RK    S+ ER+LT +IH VLCEKLKACGFDRLRSSP L V+ N+IS
Subjt:  QVYDSYPRKSCNGSIQERSLTPKIHEVLCEKLKACGFDRLRSSPTL-VMLNNIS
A0A6J1L0V7 uncharacterized protein LOC1114980927.1e-0962.96Show/hide
Query:  QVYDSYPRKSCNGSIQERSLTPKIHEVLCEKLKACGFDRLRSSPTL-VMLNNIS
        +V DS+ RK    S+ ER+LT +IH VLCEKLKACGFDRLR+SP L V+ N+IS
Subjt:  QVYDSYPRKSCNGSIQERSLTPKIHEVLCEKLKACGFDRLRSSPTL-VMLNNIS
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
CAAGTATATGATTCTTATCCGAGGAAGTCTTGTAACGGGTCTATACAAGAGCGGTCTTTGACCCCAAAAATTCATGAAGTTTTGTGTGAGAAGTTAAAAGCTTGCGGGTT
TGATCGTTTAAGGTCATCTCCCACACTTGTTATGTTAAACAACATTAGT
mRNA sequenceShow/hide mRNA sequence
CAAGTATATGATTCTTATCCGAGGAAGTCTTGTAACGGGTCTATACAAGAGCGGTCTTTGACCCCAAAAATTCATGAAGTTTTGTGTGAGAAGTTAAAAGCTTGCGGGTT
TGATCGTTTAAGGTCATCTCCCACACTTGTTATGTTAAACAACATTAGT
Protein sequenceShow/hide protein sequence
QVYDSYPRKSCNGSIQERSLTPKIHEVLCEKLKACGFDRLRSSPTLVMLNNIS