; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MS013357 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS013357
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Descriptionribonuclease H2 subunit C
Genome locationscaffold402:580955..583549
RNA-Seq ExpressionMS013357
SyntenyMS013357
Gene Ontology termsGO:0006401 - RNA catabolic process (biological process)
GO:0032299 - ribonuclease H2 complex (cellular component)
InterPro domainsIPR013924 - Ribonuclease H2, subunit C


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6583796.1 Ribonuclease H2 subunit C, partial [Cucurbita argyrosperma subsp. sororia]7.6e-7283.13Show/hide
Query:  MDAENERQREVIVDLDLGRDSEAVDLSGKVHQLPCTVKLDGPCSVSHYFKPKSTGIEVDGLSVEEAYFRGRKLQGATISLPEGYSGFVLGRKDLGKRKAS
        MD+ENER+REVIVD D G DS AVDLSGKVHQLPC VK DGPCSVS YFKPKSTGIEVDGLSVE AYFRGRKLQGATISLPEGYSG+V+GRK  GKRKAS
Subjt:  MDAENERQREVIVDLDLGRDSEAVDLSGKVHQLPCTVKLDGPCSVSHYFKPKSTGIEVDGLSVEEAYFRGRKLQGATISLPEGYSGFVLGRKDLGKRKAS

Query:  EQSQD--SWEVKAKFGNITYWNHSTLPSQDDMFRRSFHWLTVAQALHQPVTAEDLASASTAHKSMS
        E+SQD  SW+VKAKF NITYWNH TLP+QDD F+RSFHWLTVAQALH+PVTAEDLA+AS A K+MS
Subjt:  EQSQD--SWEVKAKFGNITYWNHSTLPSQDDMFRRSFHWLTVAQALHQPVTAEDLASASTAHKSMS
XP_022142418.1 ribonuclease H2 subunit C [Momordica charantia]2.9e-8799.39Show/hide
Query:  MDAENERQREVIVDLDLGRDSEAVDLSGKVHQLPCTVKLDGPCSVSHYFKPKSTGIEVDGLSVEEAYFRGRKLQGATISLPEGYSGFVLGRKDLGKRKAS
        MDAENERQREVIVDLDLGRDSEAVDLSGKVHQLPCTVKLDGPCSVSHYFKPK TGIEVDGLSVEEAYFRGRKLQGATISLPEGYSGFVLGRKDLGKRKAS
Subjt:  MDAENERQREVIVDLDLGRDSEAVDLSGKVHQLPCTVKLDGPCSVSHYFKPKSTGIEVDGLSVEEAYFRGRKLQGATISLPEGYSGFVLGRKDLGKRKAS

Query:  EQSQDSWEVKAKFGNITYWNHSTLPSQDDMFRRSFHWLTVAQALHQPVTAEDLASASTAHKSMS
        EQSQDSWEVKAKFGNITYWNHSTLPSQDDMFRRSFHWLTVAQALHQPVTAEDLASASTAHKSMS
Subjt:  EQSQDSWEVKAKFGNITYWNHSTLPSQDDMFRRSFHWLTVAQALHQPVTAEDLASASTAHKSMS
XP_022927160.1 uncharacterized protein C12B10.15c [Cucurbita moschata]3.8e-7182.53Show/hide
Query:  MDAENERQREVIVDLDLGRDSEAVDLSGKVHQLPCTVKLDGPCSVSHYFKPKSTGIEVDGLSVEEAYFRGRKLQGATISLPEGYSGFVLGRKDLGKRKAS
        MD+E ER+REVIVD D G DS AVDLSGKVHQLPC VK DGPCSVS YFKPKSTGIEVDGLSVE AYFRGRKLQGATISLPEGYSG+V+GRK  GKRKAS
Subjt:  MDAENERQREVIVDLDLGRDSEAVDLSGKVHQLPCTVKLDGPCSVSHYFKPKSTGIEVDGLSVEEAYFRGRKLQGATISLPEGYSGFVLGRKDLGKRKAS

Query:  EQSQD--SWEVKAKFGNITYWNHSTLPSQDDMFRRSFHWLTVAQALHQPVTAEDLASASTAHKSMS
        E+SQD  SW+VKAKF NITYWNH TLP+QDD F+RSFHWLTVAQALH+PVTAEDLA+AS A K+MS
Subjt:  EQSQD--SWEVKAKFGNITYWNHSTLPSQDDMFRRSFHWLTVAQALHQPVTAEDLASASTAHKSMS
XP_023001622.1 uncharacterized protein C12B10.15c [Cucurbita maxima]1.4e-7081.93Show/hide
Query:  MDAENERQREVIVDLDLGRDSEAVDLSGKVHQLPCTVKLDGPCSVSHYFKPKSTGIEVDGLSVEEAYFRGRKLQGATISLPEGYSGFVLGRKDLGKRKAS
        MD+E ER+REVIVD D G DS AVDLSGKVHQLPC VK DGPCSVS YFKPKSTGIEVDGLSV+ AYFRGRKLQGATISLPEGY G+V+GRK L KRKAS
Subjt:  MDAENERQREVIVDLDLGRDSEAVDLSGKVHQLPCTVKLDGPCSVSHYFKPKSTGIEVDGLSVEEAYFRGRKLQGATISLPEGYSGFVLGRKDLGKRKAS

Query:  EQSQD--SWEVKAKFGNITYWNHSTLPSQDDMFRRSFHWLTVAQALHQPVTAEDLASASTAHKSMS
        E+SQD  SW+VKAKF NITYWNH TLP+QDD F+RSFHWLTVAQALH+PVTAEDLA ASTA K+MS
Subjt:  EQSQD--SWEVKAKFGNITYWNHSTLPSQDDMFRRSFHWLTVAQALHQPVTAEDLASASTAHKSMS
XP_038893586.1 uncharacterized protein C12B10.15c [Benincasa hispida]4.9e-7182.53Show/hide
Query:  MDAENERQREVIVDLDLGRDSEAVDLSGKVHQLPCTVKLDGPCSVSHYFKPKSTGIEVDGLSVEEAYFRGRKLQGATISLPEGYSGFVLGRKDLGKRKAS
        M+AENER+ EVIVD D   DS A+DLSGKVHQLPC +K DGPCSVS YFKPKSTGIE DGLSVEEAYFRGRKLQGATISLPEGYSG+VLG+K LGKRKAS
Subjt:  MDAENERQREVIVDLDLGRDSEAVDLSGKVHQLPCTVKLDGPCSVSHYFKPKSTGIEVDGLSVEEAYFRGRKLQGATISLPEGYSGFVLGRKDLGKRKAS

Query:  EQSQDS--WEVKAKFGNITYWNHSTLPSQDDMFRRSFHWLTVAQALHQPVTAEDLASASTAHKSMS
        EQ Q+S  W+VKAKF NITYWNH TLPSQDD F+RSFHWLTVAQALH+PVTAEDLASASTA K+MS
Subjt:  EQSQDS--WEVKAKFGNITYWNHSTLPSQDDMFRRSFHWLTVAQALHQPVTAEDLASASTAHKSMS
TrEMBL top hitse value%identityAlignment
A0A1S3C9A8 uncharacterized protein C12B10.15c6.7e-6675Show/hide
Query:  MDAENERQREVIV--DLDLGRDSEAVDLSGKVHQLPCTVKLDGPCSVSHYFKPKSTGIEVDGLSVEEAYFRGRKLQGATISLPEGYSGFVLGRKDLGKRK
        M+A+N R+ E  V  D D G D +A+DLSGK+HQLPCT+K DGPC VSHYFKPKSTGIEVDGL+VEEAYFRGRKLQGATISLPEGYSG+VLG+K LGK K
Subjt:  MDAENERQREVIV--DLDLGRDSEAVDLSGKVHQLPCTVKLDGPCSVSHYFKPKSTGIEVDGLSVEEAYFRGRKLQGATISLPEGYSGFVLGRKDLGKRK

Query:  ASEQSQDS--WEVKAKFGNITYWNHSTLPSQDDMFRRSFHWLTVAQALHQPVTAEDLASASTAHKSMS
        +S+Q  DS  W+VKAKF NITYWNH TLPSQDD F+R+FHWLTVAQALH+PVTAEDLASAS A  ++S
Subjt:  ASEQSQDS--WEVKAKFGNITYWNHSTLPSQDDMFRRSFHWLTVAQALHQPVTAEDLASASTAHKSMS
A0A5A7TIT8 Ribonuclease H2 subunit C isoform X26.7e-6675Show/hide
Query:  MDAENERQREVIV--DLDLGRDSEAVDLSGKVHQLPCTVKLDGPCSVSHYFKPKSTGIEVDGLSVEEAYFRGRKLQGATISLPEGYSGFVLGRKDLGKRK
        M+A+N R+ E  V  D D G D +A+DLSGK+HQLPCT+K DGPC VSHYFKPKSTGIEVDGL+VEEAYFRGRKLQGATISLPEGYSG+VLG+K LGK K
Subjt:  MDAENERQREVIV--DLDLGRDSEAVDLSGKVHQLPCTVKLDGPCSVSHYFKPKSTGIEVDGLSVEEAYFRGRKLQGATISLPEGYSGFVLGRKDLGKRK

Query:  ASEQSQDS--WEVKAKFGNITYWNHSTLPSQDDMFRRSFHWLTVAQALHQPVTAEDLASASTAHKSMS
        +S+Q  DS  W+VKAKF NITYWNH TLPSQDD F+R+FHWLTVAQALH+PVTAEDLASAS A  ++S
Subjt:  ASEQSQDS--WEVKAKFGNITYWNHSTLPSQDDMFRRSFHWLTVAQALHQPVTAEDLASASTAHKSMS
A0A6J1CLH6 ribonuclease H2 subunit C1.4e-8799.39Show/hide
Query:  MDAENERQREVIVDLDLGRDSEAVDLSGKVHQLPCTVKLDGPCSVSHYFKPKSTGIEVDGLSVEEAYFRGRKLQGATISLPEGYSGFVLGRKDLGKRKAS
        MDAENERQREVIVDLDLGRDSEAVDLSGKVHQLPCTVKLDGPCSVSHYFKPK TGIEVDGLSVEEAYFRGRKLQGATISLPEGYSGFVLGRKDLGKRKAS
Subjt:  MDAENERQREVIVDLDLGRDSEAVDLSGKVHQLPCTVKLDGPCSVSHYFKPKSTGIEVDGLSVEEAYFRGRKLQGATISLPEGYSGFVLGRKDLGKRKAS

Query:  EQSQDSWEVKAKFGNITYWNHSTLPSQDDMFRRSFHWLTVAQALHQPVTAEDLASASTAHKSMS
        EQSQDSWEVKAKFGNITYWNHSTLPSQDDMFRRSFHWLTVAQALHQPVTAEDLASASTAHKSMS
Subjt:  EQSQDSWEVKAKFGNITYWNHSTLPSQDDMFRRSFHWLTVAQALHQPVTAEDLASASTAHKSMS
A0A6J1EN41 uncharacterized protein C12B10.15c1.8e-7182.53Show/hide
Query:  MDAENERQREVIVDLDLGRDSEAVDLSGKVHQLPCTVKLDGPCSVSHYFKPKSTGIEVDGLSVEEAYFRGRKLQGATISLPEGYSGFVLGRKDLGKRKAS
        MD+E ER+REVIVD D G DS AVDLSGKVHQLPC VK DGPCSVS YFKPKSTGIEVDGLSVE AYFRGRKLQGATISLPEGYSG+V+GRK  GKRKAS
Subjt:  MDAENERQREVIVDLDLGRDSEAVDLSGKVHQLPCTVKLDGPCSVSHYFKPKSTGIEVDGLSVEEAYFRGRKLQGATISLPEGYSGFVLGRKDLGKRKAS

Query:  EQSQD--SWEVKAKFGNITYWNHSTLPSQDDMFRRSFHWLTVAQALHQPVTAEDLASASTAHKSMS
        E+SQD  SW+VKAKF NITYWNH TLP+QDD F+RSFHWLTVAQALH+PVTAEDLA+AS A K+MS
Subjt:  EQSQD--SWEVKAKFGNITYWNHSTLPSQDDMFRRSFHWLTVAQALHQPVTAEDLASASTAHKSMS
A0A6J1KH29 uncharacterized protein C12B10.15c6.9e-7181.93Show/hide
Query:  MDAENERQREVIVDLDLGRDSEAVDLSGKVHQLPCTVKLDGPCSVSHYFKPKSTGIEVDGLSVEEAYFRGRKLQGATISLPEGYSGFVLGRKDLGKRKAS
        MD+E ER+REVIVD D G DS AVDLSGKVHQLPC VK DGPCSVS YFKPKSTGIEVDGLSV+ AYFRGRKLQGATISLPEGY G+V+GRK L KRKAS
Subjt:  MDAENERQREVIVDLDLGRDSEAVDLSGKVHQLPCTVKLDGPCSVSHYFKPKSTGIEVDGLSVEEAYFRGRKLQGATISLPEGYSGFVLGRKDLGKRKAS

Query:  EQSQD--SWEVKAKFGNITYWNHSTLPSQDDMFRRSFHWLTVAQALHQPVTAEDLASASTAHKSMS
        E+SQD  SW+VKAKF NITYWNH TLP+QDD F+RSFHWLTVAQALH+PVTAEDLA ASTA K+MS
Subjt:  EQSQD--SWEVKAKFGNITYWNHSTLPSQDDMFRRSFHWLTVAQALHQPVTAEDLASASTAHKSMS
SwissProt top hitse value%identityAlignment
Q10448 Uncharacterized protein C12B10.15c6.8e-0731.36Show/hide
Query:  KVHQLPCTVKLDGPCSVSHYFKPKSTGIEVDGLSVEEAYFRGRKLQGATISLPEGYSG-FVLGRKDLGKRKASEQS--QDSWEVKAKFGNITYWNHSTL-
        K   LPC +  DGP  V  YF  K   I  +  S      RGR+L G  + LPE Y+G  VL    L   + SE+   + +W + + F  +  WN   + 
Subjt:  KVHQLPCTVKLDGPCSVSHYFKPKSTGIEVDGLSVEEAYFRGRKLQGATISLPEGYSG-FVLGRKDLGKRKASEQS--QDSWEVKAKFGNITYWNHSTL-

Query:  PSQDDMFRRS-FHWLTVA
         S+ D ++R    W+  A
Subjt:  PSQDDMFRRS-FHWLTVA
Q8TDP1 Ribonuclease H2 subunit C7.2e-0929.93Show/hide
Query:  VHQLPCTVKLDGPCSVSHYFKPKSTGIEVDGLSVEEAYFRGRKLQGATISLPEGYSGFV---------LGRKD-LGKRKASEQSQDSWE--------VKA
        +H LPC V +DGP  V  +F P        G    E  FRGR L+G  +++P G  G+V         +G+ D L      +Q ++  E          A
Subjt:  VHQLPCTVKLDGPCSVSHYFKPKSTGIEVDGLSVEEAYFRGRKLQGATISLPEGYSGFV---------LGRKD-LGKRKASEQSQDSWE--------VKA

Query:  KFGNITYWNHSTLPSQDDMFRRSFHWLTVAQALHQPV
         F   T W   T+P  D   R +  W ++A A+H  V
Subjt:  KFGNITYWNHSTLPSQDDMFRRSFHWLTVAQALHQPV
Arabidopsis top hitse value%identityAlignment
AT2G39440.1 CONTAINS InterPro DOMAIN/s: Ribonuclease H2, subunit C (InterPro:IPR013924); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).1.5e-4961.07Show/hide
Query:  DSEAVDLSGKVHQLPCTVKLDGPCSVSHYFKPKSTGIEVDGLSVEEAYFRGRKLQGATISLPEGYSGFVLGRKD----LGKRKASEQSQDS--WEVKAKF
        ++  VDLS +VHQLPC ++ DGP  VSHYFKPKS+ +E+DG+  EEA+FRGRKLQGATISLP GYSGFVL +       GKRKAS  ++D+  WEVKAKF
Subjt:  DSEAVDLSGKVHQLPCTVKLDGPCSVSHYFKPKSTGIEVDGLSVEEAYFRGRKLQGATISLPEGYSGFVLGRKD----LGKRKASEQSQDS--WEVKAKF

Query:  GNITYWNHSTLPSQDDMFRRSFHWLTVAQALHQPVTAEDLASASTAHKS
         N+TYWNH +LPS+DD F RSFHW ++A+ALH+PV  EDL + S   K+
Subjt:  GNITYWNHSTLPSQDDMFRRSFHWLTVAQALHQPVTAEDLASASTAHKS

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATGCGGAAAACGAGAGGCAAAGGGAAGTAATTGTGGATCTTGATCTTGGGAGGGACTCGGAAGCTGTCGACCTCAGCGGCAAAGTTCATCAGCTTCCCTGTACCGT
TAAACTCGATGGTCCTTGCTCTGTTTCTCACTATTTCAAACCCAAATCCACTGGAATCGAGGTTGACGGTTTGAGCGTTGAGGAAGCTTATTTCAGAGGAAGAAAGTTGC
AAGGAGCTACCATTTCCCTTCCAGAAGGTTACTCTGGCTTTGTGCTAGGGAGGAAAGATCTTGGAAAGCGAAAAGCTTCTGAACAGTCTCAGGACTCTTGGGAGGTGAAG
GCCAAATTTGGAAACATAACATATTGGAACCACAGCACCCTGCCTTCACAAGATGATATGTTTCGGCGTTCTTTTCACTGGCTTACCGTTGCACAAGCATTGCACCAACC
GGTGACAGCAGAAGATCTGGCATCTGCATCTACTGCTCACAAGAGCATGAGT
mRNA sequenceShow/hide mRNA sequence
ATGGATGCGGAAAACGAGAGGCAAAGGGAAGTAATTGTGGATCTTGATCTTGGGAGGGACTCGGAAGCTGTCGACCTCAGCGGCAAAGTTCATCAGCTTCCCTGTACCGT
TAAACTCGATGGTCCTTGCTCTGTTTCTCACTATTTCAAACCCAAATCCACTGGAATCGAGGTTGACGGTTTGAGCGTTGAGGAAGCTTATTTCAGAGGAAGAAAGTTGC
AAGGAGCTACCATTTCCCTTCCAGAAGGTTACTCTGGCTTTGTGCTAGGGAGGAAAGATCTTGGAAAGCGAAAAGCTTCTGAACAGTCTCAGGACTCTTGGGAGGTGAAG
GCCAAATTTGGAAACATAACATATTGGAACCACAGCACCCTGCCTTCACAAGATGATATGTTTCGGCGTTCTTTTCACTGGCTTACCGTTGCACAAGCATTGCACCAACC
GGTGACAGCAGAAGATCTGGCATCTGCATCTACTGCTCACAAGAGCATGAGT
Protein sequenceShow/hide protein sequence
MDAENERQREVIVDLDLGRDSEAVDLSGKVHQLPCTVKLDGPCSVSHYFKPKSTGIEVDGLSVEEAYFRGRKLQGATISLPEGYSGFVLGRKDLGKRKASEQSQDSWEVK
AKFGNITYWNHSTLPSQDDMFRRSFHWLTVAQALHQPVTAEDLASASTAHKSMS