CuGenDBv2

Gene ID	MS013399
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	primase homolog protein isoform X1
Genome location	scaffold402:957453..961526
RNA-Seq Expression	MS013399
Synteny	MS013399
Gene Ontology terms	GO:0032508 - DNA duplex unwinding (biological process) GO:0003697 - single-stranded DNA binding (molecular function) GO:0043139 - 5'-3' DNA helicase activity (molecular function)
InterPro domains	IPR006171 - TOPRIM domain IPR027032 - Twinkle-like protein IPR034154 - Archaeal primase DnaG/twinkle, TOPRIM domain

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

XP_011659247.1 primase homolog protein isoform X1 [Cucumis sativus]

2.3e-169

78.31

Show/hide

Query:  MPINAAF-------------NHRPAPLFHPLNPFSFSS--PRFLRFCSTRPSSAASHAPPPPSPPPVKVLMEKMDLIGIACDENCTPGKYYCLFCPKCKG
        MPIN+ F             NHR  P  H LN FS SS   RFLRFC+TR SSA SHA  PPSPPPVK LME+MDL+GI CDE+C PGKYYCLFCPKCKG
Subjt:  MPINAAF-------------NHRPAPLFHPLNPFSFSS--PRFLRFCSTRPSSAASHAPPPPSPPPVKVLMEKMDLIGIACDENCTPGKYYCLFCPKCKG

Query:  GPLTERSLSLHVVPTGDFAMWRCYLSECGWAGRIFADGRLAFNGLGRTVKLVGRSAKESLVLEPLGDELISYFSKRMIPQETLERNFVMQIAGRQGVIAF
        G L ERSLSLHV+PTGDFAMWRC+  ECGWAG+IFADG+LAFNG G+  K+VGRS+KESLVLEPL DELISYFS RMI QETLERN VMQ+AGRQ  IAF
Subjt:  GPLTERSLSLHVVPTGDFAMWRCYLSECGWAGRIFADGRLAFNGLGRTVKLVGRSAKESLVLEPLGDELISYFSKRMIPQETLERNFVMQIAGRQGVIAF

Query:  TYRQNGQLLGCKYRTLDKRFWQEKGTEKLLYGIDDINDADEVIIVEGEMDKLSVEEAGFLNCISVPGGAPRKVSTDSVLPSIEKDTAYQYLWSCKDYLDK
        TYRQNGQL+GCKYRT+DKRFWQEKGT K LYGIDDINDADE+IIVEGEMDKLSVEEAGFLNCISVPGGAP KVSTD+V P IEKDTAYQYLWSCKDYLDK
Subjt:  TYRQNGQLLGCKYRTLDKRFWQEKGTEKLLYGIDDINDADEVIIVEGEMDKLSVEEAGFLNCISVPGGAPRKVSTDSVLPSIEKDTAYQYLWSCKDYLDK

Query:  VSHIILATDSDEPGQALAEELARRLGKHRCWRVDWPYKDDFNRFKDANEILVHLGPDALKRALKNAKSYEHSNANQIQ
        VS +ILATDSD PGQALAEELARRLGK+RCWRV WPYKD FNRFKDANE+LVHLGPDALK+A+++AK Y+ S++NQIQ
Subjt:  VSHIILATDSDEPGQALAEELARRLGKHRCWRVDWPYKDDFNRFKDANEILVHLGPDALKRALKNAKSYEHSNANQIQ

XP_022142548.1 primase homolog protein isoform X1 [Momordica charantia]

2.3e-214

99.45

Show/hide

Query:  MPINAAFNHRPAPLFHPLNPFSFSSPRFLRFCSTRPSSAASHAPPPPSPPPVKVLMEKMDLIGIACDENCTPGKYYCLFCPKCKGGPLTERSLSLHVVPT
        MPINAAFNHRPAPLFHPLNPFSFSSP FLRFCSTRPSSAASHAPPPPSPPPVKVLMEKMDLIGIACDENCTPGKYYCLFCPKCKGGPLTERSLSLHVVPT
Subjt:  MPINAAFNHRPAPLFHPLNPFSFSSPRFLRFCSTRPSSAASHAPPPPSPPPVKVLMEKMDLIGIACDENCTPGKYYCLFCPKCKGGPLTERSLSLHVVPT

Query:  GDFAMWRCYLSECGWAGRIFADGRLAFNGLGRTVKLVGRSAKESLVLEPLGDELISYFSKRMIPQETLERNFVMQIAGRQGVIAFTYRQNGQLLGCKYRT
        GDFAMWRCYLSECGWAGRIFADGRLAFNGLGRTVKLVGRSAKESLVLEPLGDELI YFSKRMIPQETLERNFVMQIAGRQGVIAFTYRQNGQLLGCKYRT
Subjt:  GDFAMWRCYLSECGWAGRIFADGRLAFNGLGRTVKLVGRSAKESLVLEPLGDELISYFSKRMIPQETLERNFVMQIAGRQGVIAFTYRQNGQLLGCKYRT

Query:  LDKRFWQEKGTEKLLYGIDDINDADEVIIVEGEMDKLSVEEAGFLNCISVPGGAPRKVSTDSVLPSIEKDTAYQYLWSCKDYLDKVSHIILATDSDEPGQ
        LDKRFWQEKGTEKLLYGIDDINDADEVIIVEGEMDKLSVEEAGFLNCISVPGGAPRKVSTDSVLPSIEKDTAYQYLWSCKDYLDKVSHIILATDSDEPGQ
Subjt:  LDKRFWQEKGTEKLLYGIDDINDADEVIIVEGEMDKLSVEEAGFLNCISVPGGAPRKVSTDSVLPSIEKDTAYQYLWSCKDYLDKVSHIILATDSDEPGQ

Query:  ALAEELARRLGKHRCWRVDWPYKDDFNRFKDANEILVHLGPDALKRALKNAKSYEHSNANQIQ
        ALAEELARRLGKHRCWRVDWPYKDDFNRFKDANEILVHLGPDALKRALKNAKSYEHSNANQIQ
Subjt:  ALAEELARRLGKHRCWRVDWPYKDDFNRFKDANEILVHLGPDALKRALKNAKSYEHSNANQIQ

XP_022142549.1 primase homolog protein isoform X2 [Momordica charantia]

3.2e-200

95.04

Show/hide

Query:  MPINAAFNHRPAPLFHPLNPFSFSSPRFLRFCSTRPSSAASHAPPPPSPPPVKVLMEKMDLIGIACDENCTPGKYYCLFCPKCKGGPLTERSLSLHVVPT
        MPINAAFNHRPAPLFHPLNPFSFSSP FLRFCSTRPSSAASHAPPPPSPPPVKVLMEKMDLIGIACDENCTPGKYYCLFCPKCKGGPLTERSLSLHVVPT
Subjt:  MPINAAFNHRPAPLFHPLNPFSFSSPRFLRFCSTRPSSAASHAPPPPSPPPVKVLMEKMDLIGIACDENCTPGKYYCLFCPKCKGGPLTERSLSLHVVPT

Query:  GDFAMWRCYLSECGWAGRIFADGRLAFNGLGRTVKLVGRSAKESLVLEPLGDELISYFSKRMIPQETLERNFVMQIAGRQGVIAFTYRQNGQLLGCKYRT
        GDFAMWRCYLSECGWAGRIFADGRLAFNGLGRTVKLVGRSAKESLVLEPLGDELI YFSKRMIPQETLERNFVMQIAGRQGVIAFTYRQNGQLLGCKYRT
Subjt:  GDFAMWRCYLSECGWAGRIFADGRLAFNGLGRTVKLVGRSAKESLVLEPLGDELISYFSKRMIPQETLERNFVMQIAGRQGVIAFTYRQNGQLLGCKYRT

Query:  LDKRFWQEKGTEKLLYGIDDINDADEVIIVEGEMDKLSVEEAGFLNCISVPGGAPRKVSTDSVLPSIEKDTAYQYLWSCKDYLDKVSHIILATDSDEPGQ
        LDKRFWQEKGTEKLLYGIDDINDADEVIIVEGEMDKLSVEEAGFLNCISVPGGAPRKVSTDSVLPSIE                KVSHIILATDSDEPGQ
Subjt:  LDKRFWQEKGTEKLLYGIDDINDADEVIIVEGEMDKLSVEEAGFLNCISVPGGAPRKVSTDSVLPSIEKDTAYQYLWSCKDYLDKVSHIILATDSDEPGQ

Query:  ALAEELARRLGKHRCWRVDWPYKDDFNRFKDANEILVHLGPDALKRALKNAKSYEHSNANQIQ
        ALAEELARRLGKHRCWRVDWPYKDDFNRFKDANEILVHLGPDALKRALKNAKSYEHSNANQIQ
Subjt:  ALAEELARRLGKHRCWRVDWPYKDDFNRFKDANEILVHLGPDALKRALKNAKSYEHSNANQIQ

XP_022142550.1 primase homolog protein isoform X3 [Momordica charantia]

1.8e-182

99.36

Show/hide

Query:  KVLMEKMDLIGIACDENCTPGKYYCLFCPKCKGGPLTERSLSLHVVPTGDFAMWRCYLSECGWAGRIFADGRLAFNGLGRTVKLVGRSAKESLVLEPLGD
        +VLMEKMDLIGIACDENCTPGKYYCLFCPKCKGGPLTERSLSLHVVPTGDFAMWRCYLSECGWAGRIFADGRLAFNGLGRTVKLVGRSAKESLVLEPLGD
Subjt:  KVLMEKMDLIGIACDENCTPGKYYCLFCPKCKGGPLTERSLSLHVVPTGDFAMWRCYLSECGWAGRIFADGRLAFNGLGRTVKLVGRSAKESLVLEPLGD

Query:  ELISYFSKRMIPQETLERNFVMQIAGRQGVIAFTYRQNGQLLGCKYRTLDKRFWQEKGTEKLLYGIDDINDADEVIIVEGEMDKLSVEEAGFLNCISVPG
        ELI YFSKRMIPQETLERNFVMQIAGRQGVIAFTYRQNGQLLGCKYRTLDKRFWQEKGTEKLLYGIDDINDADEVIIVEGEMDKLSVEEAGFLNCISVPG
Subjt:  ELISYFSKRMIPQETLERNFVMQIAGRQGVIAFTYRQNGQLLGCKYRTLDKRFWQEKGTEKLLYGIDDINDADEVIIVEGEMDKLSVEEAGFLNCISVPG

Query:  GAPRKVSTDSVLPSIEKDTAYQYLWSCKDYLDKVSHIILATDSDEPGQALAEELARRLGKHRCWRVDWPYKDDFNRFKDANEILVHLGPDALKRALKNAK
        GAPRKVSTDSVLPSIEKDTAYQYLWSCKDYLDKVSHIILATDSDEPGQALAEELARRLGKHRCWRVDWPYKDDFNRFKDANEILVHLGPDALKRALKNAK
Subjt:  GAPRKVSTDSVLPSIEKDTAYQYLWSCKDYLDKVSHIILATDSDEPGQALAEELARRLGKHRCWRVDWPYKDDFNRFKDANEILVHLGPDALKRALKNAK

Query:  SYEHSNANQIQ
        SYEHSNANQIQ
Subjt:  SYEHSNANQIQ

XP_038893950.1 primase homolog protein isoform X1 [Benincasa hispida]

2.3e-177

85.32

Show/hide

Query:  FNHRPAPLFHPLNPFSF---SSP-RFLRFCSTRPSSAASHAPPPPSPPPVKVLMEKMDLIGIACDENCTPGKYYCLFCPKCKGGPLTERSLSLHVVPTGD
        FNHR  P  HP N FSF   SSP RFLRFC+TRPSSA SH   PPSPPPVKVLMEKMDLIGI CDE+CTPGKYYCLFCPKCKGG   ERSLSLHV+PTGD
Subjt:  FNHRPAPLFHPLNPFSF---SSP-RFLRFCSTRPSSAASHAPPPPSPPPVKVLMEKMDLIGIACDENCTPGKYYCLFCPKCKGGPLTERSLSLHVVPTGD

Query:  FAMWRCYLSECGWAGRIFADGRLAFNGLGRTVKLVGRSAKESLVLEPLGDELISYFSKRMIPQETLERNFVMQIAGRQGVIAFTYRQNGQLLGCKYRTLD
        FAMWRC+ SECGWAGRIFADGRLAFNG  RTVK VGRSA+ESLVLEPLGDELISYF+KRMI QETLERN VMQIAGRQ  IAFTYRQNGQL+GCKYRT+D
Subjt:  FAMWRCYLSECGWAGRIFADGRLAFNGLGRTVKLVGRSAKESLVLEPLGDELISYFSKRMIPQETLERNFVMQIAGRQGVIAFTYRQNGQLLGCKYRTLD

Query:  KRFWQEKGTEKLLYGIDDINDADEVIIVEGEMDKLSVEEAGFLNCISVPGGAPRKVSTDSVLPSIEKDTAYQYLWSCKDYLDKVSHIILATDSDEPGQAL
        KRFWQEKGTEKLLYGIDDINDA+E+IIVEGEMDKLSVEEAG LNCISVPGGAP KVSTD+V PS EKDTAYQYLWSCKDYLDKVS IILATDSDEPGQAL
Subjt:  KRFWQEKGTEKLLYGIDDINDADEVIIVEGEMDKLSVEEAGFLNCISVPGGAPRKVSTDSVLPSIEKDTAYQYLWSCKDYLDKVSHIILATDSDEPGQAL

Query:  AEELARRLGKHRCWRVDWPYKDDFNRFKDANEILVHLGPDALKRALKNAKSYEHSNANQIQ
        AEELARRLGKHRCWRVDWPYKDDFNRFKDANEIL+HLGPDALK A+++AK YE  ++NQI+
Subjt:  AEELARRLGKHRCWRVDWPYKDDFNRFKDANEILVHLGPDALKRALKNAKSYEHSNANQIQ

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LYN4 Toprim domain-containing protein

1.1e-169

78.31

Show/hide

Query:  MPINAAF-------------NHRPAPLFHPLNPFSFSS--PRFLRFCSTRPSSAASHAPPPPSPPPVKVLMEKMDLIGIACDENCTPGKYYCLFCPKCKG
        MPIN+ F             NHR  P  H LN FS SS   RFLRFC+TR SSA SHA  PPSPPPVK LME+MDL+GI CDE+C PGKYYCLFCPKCKG
Subjt:  MPINAAF-------------NHRPAPLFHPLNPFSFSS--PRFLRFCSTRPSSAASHAPPPPSPPPVKVLMEKMDLIGIACDENCTPGKYYCLFCPKCKG

Query:  GPLTERSLSLHVVPTGDFAMWRCYLSECGWAGRIFADGRLAFNGLGRTVKLVGRSAKESLVLEPLGDELISYFSKRMIPQETLERNFVMQIAGRQGVIAF
        G L ERSLSLHV+PTGDFAMWRC+  ECGWAG+IFADG+LAFNG G+  K+VGRS+KESLVLEPL DELISYFS RMI QETLERN VMQ+AGRQ  IAF
Subjt:  GPLTERSLSLHVVPTGDFAMWRCYLSECGWAGRIFADGRLAFNGLGRTVKLVGRSAKESLVLEPLGDELISYFSKRMIPQETLERNFVMQIAGRQGVIAF

Query:  TYRQNGQLLGCKYRTLDKRFWQEKGTEKLLYGIDDINDADEVIIVEGEMDKLSVEEAGFLNCISVPGGAPRKVSTDSVLPSIEKDTAYQYLWSCKDYLDK
        TYRQNGQL+GCKYRT+DKRFWQEKGT K LYGIDDINDADE+IIVEGEMDKLSVEEAGFLNCISVPGGAP KVSTD+V P IEKDTAYQYLWSCKDYLDK
Subjt:  TYRQNGQLLGCKYRTLDKRFWQEKGTEKLLYGIDDINDADEVIIVEGEMDKLSVEEAGFLNCISVPGGAPRKVSTDSVLPSIEKDTAYQYLWSCKDYLDK

Query:  VSHIILATDSDEPGQALAEELARRLGKHRCWRVDWPYKDDFNRFKDANEILVHLGPDALKRALKNAKSYEHSNANQIQ
        VS +ILATDSD PGQALAEELARRLGK+RCWRV WPYKD FNRFKDANE+LVHLGPDALK+A+++AK Y+ S++NQIQ
Subjt:  VSHIILATDSDEPGQALAEELARRLGKHRCWRVDWPYKDDFNRFKDANEILVHLGPDALKRALKNAKSYEHSNANQIQ

A0A6J1CL89 primase homolog protein isoform X3

8.7e-183

99.36

Show/hide

Query:  KVLMEKMDLIGIACDENCTPGKYYCLFCPKCKGGPLTERSLSLHVVPTGDFAMWRCYLSECGWAGRIFADGRLAFNGLGRTVKLVGRSAKESLVLEPLGD
        +VLMEKMDLIGIACDENCTPGKYYCLFCPKCKGGPLTERSLSLHVVPTGDFAMWRCYLSECGWAGRIFADGRLAFNGLGRTVKLVGRSAKESLVLEPLGD
Subjt:  KVLMEKMDLIGIACDENCTPGKYYCLFCPKCKGGPLTERSLSLHVVPTGDFAMWRCYLSECGWAGRIFADGRLAFNGLGRTVKLVGRSAKESLVLEPLGD

Query:  ELISYFSKRMIPQETLERNFVMQIAGRQGVIAFTYRQNGQLLGCKYRTLDKRFWQEKGTEKLLYGIDDINDADEVIIVEGEMDKLSVEEAGFLNCISVPG
        ELI YFSKRMIPQETLERNFVMQIAGRQGVIAFTYRQNGQLLGCKYRTLDKRFWQEKGTEKLLYGIDDINDADEVIIVEGEMDKLSVEEAGFLNCISVPG
Subjt:  ELISYFSKRMIPQETLERNFVMQIAGRQGVIAFTYRQNGQLLGCKYRTLDKRFWQEKGTEKLLYGIDDINDADEVIIVEGEMDKLSVEEAGFLNCISVPG

Query:  GAPRKVSTDSVLPSIEKDTAYQYLWSCKDYLDKVSHIILATDSDEPGQALAEELARRLGKHRCWRVDWPYKDDFNRFKDANEILVHLGPDALKRALKNAK
        GAPRKVSTDSVLPSIEKDTAYQYLWSCKDYLDKVSHIILATDSDEPGQALAEELARRLGKHRCWRVDWPYKDDFNRFKDANEILVHLGPDALKRALKNAK
Subjt:  GAPRKVSTDSVLPSIEKDTAYQYLWSCKDYLDKVSHIILATDSDEPGQALAEELARRLGKHRCWRVDWPYKDDFNRFKDANEILVHLGPDALKRALKNAK

Query:  SYEHSNANQIQ
        SYEHSNANQIQ
Subjt:  SYEHSNANQIQ

A0A6J1CLU0 primase homolog protein isoform X2

1.6e-200

95.04

Show/hide

Query:  MPINAAFNHRPAPLFHPLNPFSFSSPRFLRFCSTRPSSAASHAPPPPSPPPVKVLMEKMDLIGIACDENCTPGKYYCLFCPKCKGGPLTERSLSLHVVPT
        MPINAAFNHRPAPLFHPLNPFSFSSP FLRFCSTRPSSAASHAPPPPSPPPVKVLMEKMDLIGIACDENCTPGKYYCLFCPKCKGGPLTERSLSLHVVPT
Subjt:  MPINAAFNHRPAPLFHPLNPFSFSSPRFLRFCSTRPSSAASHAPPPPSPPPVKVLMEKMDLIGIACDENCTPGKYYCLFCPKCKGGPLTERSLSLHVVPT

Query:  GDFAMWRCYLSECGWAGRIFADGRLAFNGLGRTVKLVGRSAKESLVLEPLGDELISYFSKRMIPQETLERNFVMQIAGRQGVIAFTYRQNGQLLGCKYRT
        GDFAMWRCYLSECGWAGRIFADGRLAFNGLGRTVKLVGRSAKESLVLEPLGDELI YFSKRMIPQETLERNFVMQIAGRQGVIAFTYRQNGQLLGCKYRT
Subjt:  GDFAMWRCYLSECGWAGRIFADGRLAFNGLGRTVKLVGRSAKESLVLEPLGDELISYFSKRMIPQETLERNFVMQIAGRQGVIAFTYRQNGQLLGCKYRT

Query:  LDKRFWQEKGTEKLLYGIDDINDADEVIIVEGEMDKLSVEEAGFLNCISVPGGAPRKVSTDSVLPSIEKDTAYQYLWSCKDYLDKVSHIILATDSDEPGQ
        LDKRFWQEKGTEKLLYGIDDINDADEVIIVEGEMDKLSVEEAGFLNCISVPGGAPRKVSTDSVLPSIE                KVSHIILATDSDEPGQ
Subjt:  LDKRFWQEKGTEKLLYGIDDINDADEVIIVEGEMDKLSVEEAGFLNCISVPGGAPRKVSTDSVLPSIEKDTAYQYLWSCKDYLDKVSHIILATDSDEPGQ

Query:  ALAEELARRLGKHRCWRVDWPYKDDFNRFKDANEILVHLGPDALKRALKNAKSYEHSNANQIQ
        ALAEELARRLGKHRCWRVDWPYKDDFNRFKDANEILVHLGPDALKRALKNAKSYEHSNANQIQ
Subjt:  ALAEELARRLGKHRCWRVDWPYKDDFNRFKDANEILVHLGPDALKRALKNAKSYEHSNANQIQ

A0A6J1CNI0 primase homolog protein isoform X1

1.1e-214

99.45

Show/hide

Query:  MPINAAFNHRPAPLFHPLNPFSFSSPRFLRFCSTRPSSAASHAPPPPSPPPVKVLMEKMDLIGIACDENCTPGKYYCLFCPKCKGGPLTERSLSLHVVPT
        MPINAAFNHRPAPLFHPLNPFSFSSP FLRFCSTRPSSAASHAPPPPSPPPVKVLMEKMDLIGIACDENCTPGKYYCLFCPKCKGGPLTERSLSLHVVPT
Subjt:  MPINAAFNHRPAPLFHPLNPFSFSSPRFLRFCSTRPSSAASHAPPPPSPPPVKVLMEKMDLIGIACDENCTPGKYYCLFCPKCKGGPLTERSLSLHVVPT

Query:  GDFAMWRCYLSECGWAGRIFADGRLAFNGLGRTVKLVGRSAKESLVLEPLGDELISYFSKRMIPQETLERNFVMQIAGRQGVIAFTYRQNGQLLGCKYRT
        GDFAMWRCYLSECGWAGRIFADGRLAFNGLGRTVKLVGRSAKESLVLEPLGDELI YFSKRMIPQETLERNFVMQIAGRQGVIAFTYRQNGQLLGCKYRT
Subjt:  GDFAMWRCYLSECGWAGRIFADGRLAFNGLGRTVKLVGRSAKESLVLEPLGDELISYFSKRMIPQETLERNFVMQIAGRQGVIAFTYRQNGQLLGCKYRT

Query:  LDKRFWQEKGTEKLLYGIDDINDADEVIIVEGEMDKLSVEEAGFLNCISVPGGAPRKVSTDSVLPSIEKDTAYQYLWSCKDYLDKVSHIILATDSDEPGQ
        LDKRFWQEKGTEKLLYGIDDINDADEVIIVEGEMDKLSVEEAGFLNCISVPGGAPRKVSTDSVLPSIEKDTAYQYLWSCKDYLDKVSHIILATDSDEPGQ
Subjt:  LDKRFWQEKGTEKLLYGIDDINDADEVIIVEGEMDKLSVEEAGFLNCISVPGGAPRKVSTDSVLPSIEKDTAYQYLWSCKDYLDKVSHIILATDSDEPGQ

Query:  ALAEELARRLGKHRCWRVDWPYKDDFNRFKDANEILVHLGPDALKRALKNAKSYEHSNANQIQ
        ALAEELARRLGKHRCWRVDWPYKDDFNRFKDANEILVHLGPDALKRALKNAKSYEHSNANQIQ
Subjt:  ALAEELARRLGKHRCWRVDWPYKDDFNRFKDANEILVHLGPDALKRALKNAKSYEHSNANQIQ

A0A6J1GUU9 primase homolog protein-like isoform X1

1.6e-165

79.56

Show/hide

Query:  PINAAFNHRPAPLFHPLNPFSFSSPRFLRFCSTRPSSAASHAPPPPSPPPVKVLMEKMDLIGIACDENCTPGKYYCLFCPKCKGGPLTERSLSLHVVPTG
        P N  FNHRPA   HPLN FSFSSP  L    TR S A S  PP PSPPPVKVLMEKMDLIGI CDE CTPGKYYCL CPKCKGG L ERSLSLHV+PTG
Subjt:  PINAAFNHRPAPLFHPLNPFSFSSPRFLRFCSTRPSSAASHAPPPPSPPPVKVLMEKMDLIGIACDENCTPGKYYCLFCPKCKGGPLTERSLSLHVVPTG

Query:  DFAMWRCYLSECGWAGRIFADGRLAFNGLGRTVKLVGRSAKESLVLEPLGDELISYFSKRMIPQETLERNFVMQIAGRQGVIAFTYRQNGQLLGCKYRTL
        DFAMWRC+ SECGWAGRIFADGRLAFN   RT KL G +AK+SL+LEPLGDELI+YFSKRMI QETL+RN VMQ A RQ  IAFTYRQNGQL+GCKYRT+
Subjt:  DFAMWRCYLSECGWAGRIFADGRLAFNGLGRTVKLVGRSAKESLVLEPLGDELISYFSKRMIPQETLERNFVMQIAGRQGVIAFTYRQNGQLLGCKYRTL

Query:  DKRFWQEKGTEKLLYGIDDINDADEVIIVEGEMDKLSVEEAGFLNCISVPGGAPRKVSTDSVLPSIEKDTAYQYLWSCKDYLDKVSHIILATDSDEPGQA
        +K+FWQ KGTEKL YGIDDINDADE+IIVEGEMDKLSVEEAGFLNCISVPGGAP KVST++V  SI+KDTAYQYLWSCKD LDKV  IILATDSDEPGQA
Subjt:  DKRFWQEKGTEKLLYGIDDINDADEVIIVEGEMDKLSVEEAGFLNCISVPGGAPRKVSTDSVLPSIEKDTAYQYLWSCKDYLDKVSHIILATDSDEPGQA

Query:  LAEELARRLGKHRCWRVDWPYKDDFNRFKDANEILVHLGPDALKRALKNAKSYEHSNANQIQ
        LAEELA RLGKHRCWRVDWPYKDDFNRFKDANEILV LG DALK+A+++AKSY+  + ++IQ
Subjt:  LAEELARRLGKHRCWRVDWPYKDDFNRFKDANEILVHLGPDALKRALKNAKSYEHSNANQIQ

SwissProt top hits

e value

%identity

Alignment

B5X582 Twinkle homolog protein, chloroplastic/mitochondrial

2.5e-86

Show/hide

Query:  PFSFSSPRFLRFCSTRPSSAASHAPPPPSPPPVKV-------------LMEKMDLIGIACDENCTPGKYYCLFCPKCKGGPLTERSLSLHVVPTGDFAMW
        P S +SP + R   T   S+ +  P  P+P   +V             L  K+   G+   ENC PG++  L CP C+GG   E+SLSL + P G  A W
Subjt:  PFSFSSPRFLRFCSTRPSSAASHAPPPPSPPPVKV-------------LMEKMDLIGIACDENCTPGKYYCLFCPKCKGGPLTERSLSLHVVPTGDFAMW

Query:  RCYLSECGWAGRIFADGRLAFNGLGRTVKLVGRSAKESLVLEPLGDELISYFSKRMIPQETLERNFVMQ-IAGRQGVIAFTYRQNGQLLGCKYRTLDKRF
         C+  +CG  G + ADG LA        K+  +   E + LEPL DE+  YF+ R I ++TLERN VMQ   G + VIAFTY Q G+L+ CKYR+L K F
Subjt:  RCYLSECGWAGRIFADGRLAFNGLGRTVKLVGRSAKESLVLEPLGDELISYFSKRMIPQETLERNFVMQ-IAGRQGVIAFTYRQNGQLLGCKYRTLDKRF

Query:  WQEKGTEKLLYGIDDINDADEVIIVEGEMDKLSVEEAGFLNCISVPGGAPRKVSTDSVLPSIEKDTAYQYLWSCKDYLDKVSHIILATDSDEPGQALAEE
        +QE+ T ++LYG+DDI    EVIIVEGE+DKL++EEAGFLNC+SVP GAP KVS+  + PS +KDT Y++LW+C DYL K S I++ATD D PGQA+AEE
Subjt:  WQEKGTEKLLYGIDDINDADEVIIVEGEMDKLSVEEAGFLNCISVPGGAPRKVSTDSVLPSIEKDTAYQYLWSCKDYLDKVSHIILATDSDEPGQALAEE

Query:  LARRLGKHRCWRVDWPYKDDFNRFKDANEILVHLGPDALKRALKNAKSY
        +ARRLGK RCWRV WP K +   FKDANE+L+  GP  LK A+ +A+ Y
Subjt:  LARRLGKHRCWRVDWPYKDDFNRFKDANEILVHLGPDALKRALKNAKSY

F4I6E6 Primase homolog protein

2.0e-83

52.32

Show/hide

Query:  LMEKMDLIGIACDENCTPGKYYCLFCPKCKGGPLTERSLSLHVVPTGDFAMWRCYLSECGWAGRIFADGRL-AFNGLGRTVKLVGRSAKESLVLEPLGDE
        LM K+   GI   +NC PG   CL CPKC+ G   E+SL+L++ P G  A W C   +CG  G +  DG+L + + +G+  + +     ES+ LEPL DE
Subjt:  LMEKMDLIGIACDENCTPGKYYCLFCPKCKGGPLTERSLSLHVVPTGDFAMWRCYLSECGWAGRIFADGRL-AFNGLGRTVKLVGRSAKESLVLEPLGDE

Query:  LISYFSKRMIPQETLERNFVMQ-IAGRQGVIAFTYRQNGQLLGCKYRTLDKRFWQEKGTEKLLYGIDDINDADEVIIVEGEMDKLSVEEAGFLNCISVPG
        +  +F+ R I  +TLERN VMQ     + VIAFTY Q G+L+ CKYR+L K+F QE+ T K+LYG+DDI +  E+IIVEGE DKL++EEAGF NC+SVP 
Subjt:  LISYFSKRMIPQETLERNFVMQ-IAGRQGVIAFTYRQNGQLLGCKYRTLDKRFWQEKGTEKLLYGIDDINDADEVIIVEGEMDKLSVEEAGFLNCISVPG

Query:  GAPRKVSTDSVLPSIEKDTAYQYLWSCKDYLDKVSHIILATDSDEPGQALAEELARRLGKHRCWRVDWPYKDDFNRFKDANEILVHLGPDALKRALKNAK
        GAP  VS+  + PS  KDTA++Y+W+C DYL K S I++ATD D PGQALAEELARRLGK RCW V WP K +   FKDANE+L+  GP  LK A+ NA+
Subjt:  GAPRKVSTDSVLPSIEKDTAYQYLWSCKDYLDKVSHIILATDSDEPGQALAEELARRLGKHRCWRVDWPYKDDFNRFKDANEILVHLGPDALKRALKNAK

Query:  SY
         Y
Subjt:  SY

Arabidopsis top hits

e value

%identity

Alignment

AT1G30660.1 nucleic acid binding;nucleic acid binding

1.4e-84

52.32

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Query:  LMEKMDLIGIACDENCTPGKYYCLFCPKCKGGPLTERSLSLHVVPTGDFAMWRCYLSECGWAGRIFADGRL-AFNGLGRTVKLVGRSAKESLVLEPLGDE
        LM K+   GI   +NC PG   CL CPKC+ G   E+SL+L++ P G  A W C   +CG  G +  DG+L + + +G+  + +     ES+ LEPL DE
Subjt:  LMEKMDLIGIACDENCTPGKYYCLFCPKCKGGPLTERSLSLHVVPTGDFAMWRCYLSECGWAGRIFADGRL-AFNGLGRTVKLVGRSAKESLVLEPLGDE

Query:  LISYFSKRMIPQETLERNFVMQ-IAGRQGVIAFTYRQNGQLLGCKYRTLDKRFWQEKGTEKLLYGIDDINDADEVIIVEGEMDKLSVEEAGFLNCISVPG
        +  +F+ R I  +TLERN VMQ     + VIAFTY Q G+L+ CKYR+L K+F QE+ T K+LYG+DDI +  E+IIVEGE DKL++EEAGF NC+SVP 
Subjt:  LISYFSKRMIPQETLERNFVMQ-IAGRQGVIAFTYRQNGQLLGCKYRTLDKRFWQEKGTEKLLYGIDDINDADEVIIVEGEMDKLSVEEAGFLNCISVPG

Query:  GAPRKVSTDSVLPSIEKDTAYQYLWSCKDYLDKVSHIILATDSDEPGQALAEELARRLGKHRCWRVDWPYKDDFNRFKDANEILVHLGPDALKRALKNAK
        GAP  VS+  + PS  KDTA++Y+W+C DYL K S I++ATD D PGQALAEELARRLGK RCW V WP K +   FKDANE+L+  GP  LK A+ NA+
Subjt:  GAPRKVSTDSVLPSIEKDTAYQYLWSCKDYLDKVSHIILATDSDEPGQALAEELARRLGKHRCWRVDWPYKDDFNRFKDANEILVHLGPDALKRALKNAK

Query:  SY
         Y
Subjt:  SY

AT1G30680.1 toprim domain-containing protein

1.8e-87

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Query:  PFSFSSPRFLRFCSTRPSSAASHAPPPPSPPPVKV-------------LMEKMDLIGIACDENCTPGKYYCLFCPKCKGGPLTERSLSLHVVPTGDFAMW
        P S +SP + R   T   S+ +  P  P+P   +V             L  K+   G+   ENC PG++  L CP C+GG   E+SLSL + P G  A W
Subjt:  PFSFSSPRFLRFCSTRPSSAASHAPPPPSPPPVKV-------------LMEKMDLIGIACDENCTPGKYYCLFCPKCKGGPLTERSLSLHVVPTGDFAMW

Query:  RCYLSECGWAGRIFADGRLAFNGLGRTVKLVGRSAKESLVLEPLGDELISYFSKRMIPQETLERNFVMQ-IAGRQGVIAFTYRQNGQLLGCKYRTLDKRF
         C+  +CG  G + ADG LA        K+  +   E + LEPL DE+  YF+ R I ++TLERN VMQ   G + VIAFTY Q G+L+ CKYR+L K F
Subjt:  RCYLSECGWAGRIFADGRLAFNGLGRTVKLVGRSAKESLVLEPLGDELISYFSKRMIPQETLERNFVMQ-IAGRQGVIAFTYRQNGQLLGCKYRTLDKRF

Query:  WQEKGTEKLLYGIDDINDADEVIIVEGEMDKLSVEEAGFLNCISVPGGAPRKVSTDSVLPSIEKDTAYQYLWSCKDYLDKVSHIILATDSDEPGQALAEE
        +QE+ T ++LYG+DDI    EVIIVEGE+DKL++EEAGFLNC+SVP GAP KVS+  + PS +KDT Y++LW+C DYL K S I++ATD D PGQA+AEE
Subjt:  WQEKGTEKLLYGIDDINDADEVIIVEGEMDKLSVEEAGFLNCISVPGGAPRKVSTDSVLPSIEKDTAYQYLWSCKDYLDKVSHIILATDSDEPGQALAEE

Query:  LARRLGKHRCWRVDWPYKDDFNRFKDANEILVHLGPDALKRALKNAKSY
        +ARRLGK RCWRV WP K +   FKDANE+L+  GP  LK A+ +A+ Y
Subjt:  LARRLGKHRCWRVDWPYKDDFNRFKDANEILVHLGPDALKRALKNAKSY

Sequences

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CDS sequence

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ATGCCAATAAACGCCGCCTTCAATCATCGCCCTGCCCCTCTTTTTCACCCGCTCAACCCTTTCTCCTTCTCCTCCCCCCGCTTCCTTCGATTCTGCTCCACCAGACCGTC
TTCCGCCGCTTCTCATGCTCCGCCGCCGCCATCGCCACCACCAGTGAAGGTTCTAATGGAGAAGATGGATCTCATCGGAATCGCCTGTGACGAGAATTGTACGCCCGGAA
AATACTATTGCTTGTTTTGCCCTAAGTGCAAGGGTGGGCCATTAACTGAGAGGAGCTTATCTCTTCATGTGGTTCCAACTGGAGATTTTGCAATGTGGAGGTGTTACCTG
TCTGAGTGTGGTTGGGCAGGCCGGATATTTGCAGATGGAAGATTGGCATTTAATGGATTAGGCAGAACTGTAAAGTTGGTTGGACGGAGTGCAAAGGAGAGTTTGGTTTT
GGAGCCTCTTGGTGATGAGCTAATCTCTTACTTTAGCAAGAGAATGATACCCCAGGAAACTCTAGAAAGGAATTTTGTTATGCAAATAGCTGGTCGTCAGGGTGTCATTG
CATTTACTTATAGACAAAATGGACAGCTCCTCGGTTGCAAGTATCGAACATTGGACAAGAGATTTTGGCAGGAGAAGGGTACAGAAAAGTTATTATATGGGATTGATGAC
ATTAATGATGCAGATGAAGTGATCATTGTTGAAGGTGAAATGGACAAACTTTCAGTAGAAGAAGCTGGCTTCCTCAATTGTATTAGTGTTCCTGGCGGTGCCCCAAGAAA
AGTTTCAACCGATTCAGTACTACCATCAATTGAAAAGGATACGGCATATCAGTATTTATGGAGCTGTAAAGACTACTTAGATAAGGTTTCCCACATTATCTTGGCAACTG
ATAGTGATGAACCAGGGCAAGCTTTGGCAGAGGAGTTAGCACGCCGCCTTGGAAAACACAGATGCTGGCGGGTAGATTGGCCGTATAAAGATGACTTCAACCGGTTTAAA
GATGCAAACGAGATTCTAGTGCATTTGGGGCCGGATGCTTTGAAGAGAGCACTAAAAAATGCCAAGTCATATGAACATTCTAATGCAAATCAAATACAA

mRNA sequence

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Protein sequence

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MPINAAFNHRPAPLFHPLNPFSFSSPRFLRFCSTRPSSAASHAPPPPSPPPVKVLMEKMDLIGIACDENCTPGKYYCLFCPKCKGGPLTERSLSLHVVPTGDFAMWRCYL
SECGWAGRIFADGRLAFNGLGRTVKLVGRSAKESLVLEPLGDELISYFSKRMIPQETLERNFVMQIAGRQGVIAFTYRQNGQLLGCKYRTLDKRFWQEKGTEKLLYGIDD
INDADEVIIVEGEMDKLSVEEAGFLNCISVPGGAPRKVSTDSVLPSIEKDTAYQYLWSCKDYLDKVSHIILATDSDEPGQALAEELARRLGKHRCWRVDWPYKDDFNRFK
DANEILVHLGPDALKRALKNAKSYEHSNANQIQ

MS013399 (gene) of Bitter gourd (TR) v1 genome