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MS013403 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS013403
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionF-box protein
Genome locationscaffold402:1091684..1091886
RNA-Seq ExpressionMS013403
SyntenyMS013403
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0064831.1 F-box protein [Cucumis melo var. makuwa]2.9e-0654.22Show/hide
Query:  SLSLKVIYCIIS--------SWPKLFILAFFKFLVKSLFDLISPIL-QSKSHNSPA-------QIQHLQNEFPTADLQVERVV
        SLSL  + C+IS        S    F+L+FFK +VKS  DL+SPIL QS++ NSPA       QIQHLQ EFPT DL+VERVV
Subjt:  SLSLKVIYCIIS--------SWPKLFILAFFKFLVKSLFDLISPIL-QSKSHNSPA-------QIQHLQNEFPTADLQVERVV

XP_004150662.2 F-box protein At1g22220 isoform X1 [Cucumis sativus]1.2e-0758.02Show/hide
Query:  SLSLKVIYCIIS------SWPKLFILAFFKFLVKSLFDLISPI-LQSKSHNSPAQ-------IQHLQNEFPTADLQVERVV
        SLSLKV  C+IS      S    F+L+FFK ++KS  DL+SPI LQS+S NSPAQ       IQHLQ EFPT DL+VERVV
Subjt:  SLSLKVIYCIIS------SWPKLFILAFFKFLVKSLFDLISPI-LQSKSHNSPAQ-------IQHLQNEFPTADLQVERVV

XP_008445343.1 PREDICTED: F-box protein At1g22220 [Cucumis melo]2.9e-0654.22Show/hide
Query:  SLSLKVIYCIIS--------SWPKLFILAFFKFLVKSLFDLISPIL-QSKSHNSPA-------QIQHLQNEFPTADLQVERVV
        SLSL  + C+IS        S    F+L+FFK +VKS  DL+SPIL QS++ NSPA       QIQHLQ EFPT DL+VERVV
Subjt:  SLSLKVIYCIIS--------SWPKLFILAFFKFLVKSLFDLISPIL-QSKSHNSPA-------QIQHLQNEFPTADLQVERVV

XP_023002829.1 F-box protein At1g78100-like [Cucurbita maxima]8.6e-0656.41Show/hide
Query:  SLSLKVIYCIIS----SWPKLFILAFFKFLVKSLFDLISPIL-QSKSHNSPAQ-------IQHLQNEFPTADLQVERV
        SL LKV  C+IS    S    F+  FFK +VKS FDLISPIL QS+S NSPAQ       IQ L+ EFPT DL+VER+
Subjt:  SLSLKVIYCIIS----SWPKLFILAFFKFLVKSLFDLISPIL-QSKSHNSPAQ-------IQHLQNEFPTADLQVERV

XP_031737839.1 F-box protein At1g22220 isoform X2 [Cucumis sativus]1.2e-0758.02Show/hide
Query:  SLSLKVIYCIIS------SWPKLFILAFFKFLVKSLFDLISPI-LQSKSHNSPAQ-------IQHLQNEFPTADLQVERVV
        SLSLKV  C+IS      S    F+L+FFK ++KS  DL+SPI LQS+S NSPAQ       IQHLQ EFPT DL+VERVV
Subjt:  SLSLKVIYCIIS------SWPKLFILAFFKFLVKSLFDLISPI-LQSKSHNSPAQ-------IQHLQNEFPTADLQVERVV

TrEMBL top hitse value%identityAlignment
A0A0A0LN04 F-box domain-containing protein5.8e-0858.02Show/hide
Query:  SLSLKVIYCIIS------SWPKLFILAFFKFLVKSLFDLISPI-LQSKSHNSPAQ-------IQHLQNEFPTADLQVERVV
        SLSLKV  C+IS      S    F+L+FFK ++KS  DL+SPI LQS+S NSPAQ       IQHLQ EFPT DL+VERVV
Subjt:  SLSLKVIYCIIS------SWPKLFILAFFKFLVKSLFDLISPI-LQSKSHNSPAQ-------IQHLQNEFPTADLQVERVV

A0A1S3BC00 F-box protein At1g222201.4e-0654.22Show/hide
Query:  SLSLKVIYCIIS--------SWPKLFILAFFKFLVKSLFDLISPIL-QSKSHNSPA-------QIQHLQNEFPTADLQVERVV
        SLSL  + C+IS        S    F+L+FFK +VKS  DL+SPIL QS++ NSPA       QIQHLQ EFPT DL+VERVV
Subjt:  SLSLKVIYCIIS--------SWPKLFILAFFKFLVKSLFDLISPIL-QSKSHNSPA-------QIQHLQNEFPTADLQVERVV

A0A5A7VGI7 F-box protein1.4e-0654.22Show/hide
Query:  SLSLKVIYCIIS--------SWPKLFILAFFKFLVKSLFDLISPIL-QSKSHNSPA-------QIQHLQNEFPTADLQVERVV
        SLSL  + C+IS        S    F+L+FFK +VKS  DL+SPIL QS++ NSPA       QIQHLQ EFPT DL+VERVV
Subjt:  SLSLKVIYCIIS--------SWPKLFILAFFKFLVKSLFDLISPIL-QSKSHNSPA-------QIQHLQNEFPTADLQVERVV

A0A6J1GI01 F-box protein At1g22220-like4.1e-0656.41Show/hide
Query:  SLSLKVIYCIIS----SWPKLFILAFFKFLVKSLFDLISPIL-QSKSHNSPAQ-------IQHLQNEFPTADLQVERV
        SL LKV  C+IS    S    F+  FFK +VKS FDLISPIL QS+S NSPAQ       IQ L+ EFPT DL+VER+
Subjt:  SLSLKVIYCIIS----SWPKLFILAFFKFLVKSLFDLISPIL-QSKSHNSPAQ-------IQHLQNEFPTADLQVERV

A0A6J1KRK0 F-box protein At1g78100-like4.1e-0656.41Show/hide
Query:  SLSLKVIYCIIS----SWPKLFILAFFKFLVKSLFDLISPIL-QSKSHNSPAQ-------IQHLQNEFPTADLQVERV
        SL LKV  C+IS    S    F+  FFK +VKS FDLISPIL QS+S NSPAQ       IQ L+ EFPT DL+VER+
Subjt:  SLSLKVIYCIIS----SWPKLFILAFFKFLVKSLFDLISPIL-QSKSHNSPAQ-------IQHLQNEFPTADLQVERV

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
TCCCTCTCTCTGAAGGTGATCTATTGCATCATTTCCTCCTGGCCAAAACTCTTTATCCTCGCTTTCTTCAAGTTCCTCGTCAAATCCTTATTCGATTTGATTTCCCCAAT
TCTGCAATCCAAATCCCATAACTCCCCTGCACAGATCCAACACCTGCAAAATGAGTTTCCGACTGCAGATCTTCAGGTCGAGAGGGTCGTG
mRNA sequenceShow/hide mRNA sequence
TCCCTCTCTCTGAAGGTGATCTATTGCATCATTTCCTCCTGGCCAAAACTCTTTATCCTCGCTTTCTTCAAGTTCCTCGTCAAATCCTTATTCGATTTGATTTCCCCAAT
TCTGCAATCCAAATCCCATAACTCCCCTGCACAGATCCAACACCTGCAAAATGAGTTTCCGACTGCAGATCTTCAGGTCGAGAGGGTCGTG
Protein sequenceShow/hide protein sequence
SLSLKVIYCIISSWPKLFILAFFKFLVKSLFDLISPILQSKSHNSPAQIQHLQNEFPTADLQVERVV