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MS013422 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS013422
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionTransmembrane protein
Genome locationscaffold402:1400331..1400789
RNA-Seq ExpressionMS013422
SyntenyMS013422
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6583852.1 hypothetical protein SDJN03_19784, partial [Cucurbita argyrosperma subsp. sororia]4.3e-5375.48Show/hide
Query:  SQIAAFTAVYCSLAVIFLAGGTSNARELRPSEHGLEFQNPGSGAAEKSSPDMKSFFRGNSWSSSEVALPKAMNTSVPPEWWTRSHHHGDRTGAAA--GRG
        S+IAA  AVYCS+AVIFLAGG SNAR+LRPSEHGLE+QNP  GA E SSPDM+SFF+GNSWSSS+VALPKAMNTS+P +WW RSH   DR+GAAA  G G
Subjt:  SQIAAFTAVYCSLAVIFLAGGTSNARELRPSEHGLEFQNPGSGAAEKSSPDMKSFFRGNSWSSSEVALPKAMNTSVPPEWWTRSHHHGDRTGAAA--GRG

Query:  DHIRGALLVASLVCGIVGVSLLIASAFIYIFKFKKHRSSPSSLSLSDSTNIVINK
        DHIRGALLVASLVCG++GVSLLIASAFIY+FKF+K   S SSLS+S++TNI+ NK
Subjt:  DHIRGALLVASLVCGIVGVSLLIASAFIYIFKFKKHRSSPSSLSLSDSTNIVINK

XP_022927447.1 uncharacterized protein LOC111434271 [Cucurbita moschata]5.6e-5374.84Show/hide
Query:  SQIAAFTAVYCSLAVIFLAGGTSNARELRPSEHGLEFQNPGSGAAEKSSPDMKSFFRGNSWSSSEVALPKAMNTSVPPEWWTRSHHHGDRTGAAA--GRG
        S+IAA  A+YCS+AVIFLAGG SNAR+LRPSEHGLE+QNP  GA E SSPDM+SFF+GNSWSSS+VALPKAMNTS+P +WW RSH   DR+GAAA  G G
Subjt:  SQIAAFTAVYCSLAVIFLAGGTSNARELRPSEHGLEFQNPGSGAAEKSSPDMKSFFRGNSWSSSEVALPKAMNTSVPPEWWTRSHHHGDRTGAAA--GRG

Query:  DHIRGALLVASLVCGIVGVSLLIASAFIYIFKFKKHRSSPSSLSLSDSTNIVINK
        DHIRGALLVASLVCG++GVSLLIASAFIY+FKF+K   S SSLS+S++TNI+ NK
Subjt:  DHIRGALLVASLVCGIVGVSLLIASAFIYIFKFKKHRSSPSSLSLSDSTNIVINK

XP_023000949.1 uncharacterized protein LOC111495232 [Cucurbita maxima]1.1e-5373.86Show/hide
Query:  SQIAAFTAVYCSLAVIFLAGGTSNARELRPSEHGLEFQNPGSGAAEKSSPDMKSFFRGNSWSSSEVALPKAMNTSVPPEWWTRSHHHGDRTGAAAGRGDH
        S+IAAF A+YCSLAVIFLAGG SNAR+LRPSEHGLE+QNP  GA E SSPDM+SFF+GNSWSSS+VALPKAMNTS+P +WW RSH       A  G GDH
Subjt:  SQIAAFTAVYCSLAVIFLAGGTSNARELRPSEHGLEFQNPGSGAAEKSSPDMKSFFRGNSWSSSEVALPKAMNTSVPPEWWTRSHHHGDRTGAAAGRGDH

Query:  IRGALLVASLVCGIVGVSLLIASAFIYIFKFKKHRSSPSSLSLSDSTNIVINK
        IRGALLVASLVCG++GVSLLIASAFIY+FKF+K   S SSLS+S++TNI+ NK
Subjt:  IRGALLVASLVCGIVGVSLLIASAFIYIFKFKKHRSSPSSLSLSDSTNIVINK

XP_023519911.1 uncharacterized protein LOC111783236 [Cucurbita pepo subsp. pepo]7.3e-5374.84Show/hide
Query:  SQIAAFTAVYCSLAVIFLAGGTSNARELRPSEHGLEFQNPGSGAAEKSSPDMKSFFRGNSWSSSEVALPKAMNTSVPPEWWTRSHHHGDRTGAA--AGRG
        S+IAA  A+YCSLAVIFLAGG SNAR+LRPSEHGLE+QNP  GA E SSPDM+SFF+GNSWSSS+VALPKAMNTS+P +WW RSH   DR+GAA   G G
Subjt:  SQIAAFTAVYCSLAVIFLAGGTSNARELRPSEHGLEFQNPGSGAAEKSSPDMKSFFRGNSWSSSEVALPKAMNTSVPPEWWTRSHHHGDRTGAA--AGRG

Query:  DHIRGALLVASLVCGIVGVSLLIASAFIYIFKFKKHRSSPSSLSLSDSTNIVINK
        DHIRGALLVASLVCG++GVSLLIASAFIY+FKF+K   S SSLS+S++TNI+ NK
Subjt:  DHIRGALLVASLVCGIVGVSLLIASAFIYIFKFKKHRSSPSSLSLSDSTNIVINK

XP_038895122.1 uncharacterized protein LOC120083432 [Benincasa hispida]1.7e-4971.24Show/hide
Query:  SQIAAFTAVYCSLAVIFLAGGTSNARELRPSEHGLEFQNPGSGAAEKSSPDMKSFFRGNSWSSSEVALPKAMNTSVPPEWWTRSHHHGDRTGAAAGRGDH
        SQI +F AV+ SLAVI LA G SNAR+LRPSEHGLE+QNP  GA E SSP M+SFF+GNSWSSS+VALPKAMNTS+PP+WW RSH +     A  G GDH
Subjt:  SQIAAFTAVYCSLAVIFLAGGTSNARELRPSEHGLEFQNPGSGAAEKSSPDMKSFFRGNSWSSSEVALPKAMNTSVPPEWWTRSHHHGDRTGAAAGRGDH

Query:  IRGALLVASLVCGIVGVSLLIASAFIYIFKFKKHRSSPSSLSLSDSTNIVINK
        IRGALLVASLVCGI+G+SLLIASAFIY FKF+K   S SSLS+S++TNI+ NK
Subjt:  IRGALLVASLVCGIVGVSLLIASAFIYIFKFKKHRSSPSSLSLSDSTNIVINK

TrEMBL top hitse value%identityAlignment
A0A1S3BC63 uncharacterized protein LOC1034883247.9e-4565.61Show/hide
Query:  SQIAAFTAVYCSLA-VIFLAGGTSNARELRPSEHGLEFQNPGSGAAEKSSPDMKSFFRGNSWSSSEVALPKAMNTSVPPEWWTRSHHHGDRTGAAAGRGD
        S I +F  +Y SLA +I L    SNAR+LRPSEHGL++QNP   A + SSP M+SFF+GNSWS+S+VALPKAMNTS+PP+WW RSH   +R+GA+A  GD
Subjt:  SQIAAFTAVYCSLA-VIFLAGGTSNARELRPSEHGLEFQNPGSGAAEKSSPDMKSFFRGNSWSSSEVALPKAMNTSVPPEWWTRSHHHGDRTGAAAGRGD

Query:  HIRGALLVASLVCGIVGVSLLIASAFIYIFKFKKH---RSSPSSLSLSDSTNIVINK
        HIRGALLVASLVCGI+GVSLL+ASAFIY FKF+K     SS SSLS S++TNI+ NK
Subjt:  HIRGALLVASLVCGIVGVSLLIASAFIYIFKFKKH---RSSPSSLSLSDSTNIVINK

A0A5D3C2L6 Uncharacterized protein7.9e-4565.61Show/hide
Query:  SQIAAFTAVYCSLA-VIFLAGGTSNARELRPSEHGLEFQNPGSGAAEKSSPDMKSFFRGNSWSSSEVALPKAMNTSVPPEWWTRSHHHGDRTGAAAGRGD
        S I +F  +Y SLA +I L    SNAR+LRPSEHGL++QNP   A + SSP M+SFF+GNSWS+S+VALPKAMNTS+PP+WW RSH   +R+GA+A  GD
Subjt:  SQIAAFTAVYCSLA-VIFLAGGTSNARELRPSEHGLEFQNPGSGAAEKSSPDMKSFFRGNSWSSSEVALPKAMNTSVPPEWWTRSHHHGDRTGAAAGRGD

Query:  HIRGALLVASLVCGIVGVSLLIASAFIYIFKFKKH---RSSPSSLSLSDSTNIVINK
        HIRGALLVASLVCGI+GVSLL+ASAFIY FKF+K     SS SSLS S++TNI+ NK
Subjt:  HIRGALLVASLVCGIVGVSLLIASAFIYIFKFKKH---RSSPSSLSLSDSTNIVINK

A0A6J1CG32 uncharacterized protein LOC1110109109.0e-49100Show/hide
Query:  MKSFFRGNSWSSSEVALPKAMNTSVPPEWWTRSHHHGDRTGAAAGRGDHIRGALLVASLVCGIVGVSLLIASAFIYIFKFKKHRSSPSSLSLSDSTNIVI
        MKSFFRGNSWSSSEVALPKAMNTSVPPEWWTRSHHHGDRTGAAAGRGDHIRGALLVASLVCGIVGVSLLIASAFIYIFKFKKHRSSPSSLSLSDSTNIVI
Subjt:  MKSFFRGNSWSSSEVALPKAMNTSVPPEWWTRSHHHGDRTGAAAGRGDHIRGALLVASLVCGIVGVSLLIASAFIYIFKFKKHRSSPSSLSLSDSTNIVI

Query:  NK
        NK
Subjt:  NK

A0A6J1EH69 uncharacterized protein LOC1114342712.7e-5374.84Show/hide
Query:  SQIAAFTAVYCSLAVIFLAGGTSNARELRPSEHGLEFQNPGSGAAEKSSPDMKSFFRGNSWSSSEVALPKAMNTSVPPEWWTRSHHHGDRTGAAA--GRG
        S+IAA  A+YCS+AVIFLAGG SNAR+LRPSEHGLE+QNP  GA E SSPDM+SFF+GNSWSSS+VALPKAMNTS+P +WW RSH   DR+GAAA  G G
Subjt:  SQIAAFTAVYCSLAVIFLAGGTSNARELRPSEHGLEFQNPGSGAAEKSSPDMKSFFRGNSWSSSEVALPKAMNTSVPPEWWTRSHHHGDRTGAAA--GRG

Query:  DHIRGALLVASLVCGIVGVSLLIASAFIYIFKFKKHRSSPSSLSLSDSTNIVINK
        DHIRGALLVASLVCG++GVSLLIASAFIY+FKF+K   S SSLS+S++TNI+ NK
Subjt:  DHIRGALLVASLVCGIVGVSLLIASAFIYIFKFKKHRSSPSSLSLSDSTNIVINK

A0A6J1KLE3 uncharacterized protein LOC1114952325.5e-5473.86Show/hide
Query:  SQIAAFTAVYCSLAVIFLAGGTSNARELRPSEHGLEFQNPGSGAAEKSSPDMKSFFRGNSWSSSEVALPKAMNTSVPPEWWTRSHHHGDRTGAAAGRGDH
        S+IAAF A+YCSLAVIFLAGG SNAR+LRPSEHGLE+QNP  GA E SSPDM+SFF+GNSWSSS+VALPKAMNTS+P +WW RSH       A  G GDH
Subjt:  SQIAAFTAVYCSLAVIFLAGGTSNARELRPSEHGLEFQNPGSGAAEKSSPDMKSFFRGNSWSSSEVALPKAMNTSVPPEWWTRSHHHGDRTGAAAGRGDH

Query:  IRGALLVASLVCGIVGVSLLIASAFIYIFKFKKHRSSPSSLSLSDSTNIVINK
        IRGALLVASLVCG++GVSLLIASAFIY+FKF+K   S SSLS+S++TNI+ NK
Subjt:  IRGALLVASLVCGIVGVSLLIASAFIYIFKFKKHRSSPSSLSLSDSTNIVINK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G30515.1 unknown protein3.8e-0735.16Show/hide
Query:  VIFLAGGTSNARELRPSEHGLE-FQNPGSGAAEKSSPDMKSFF---RGNSWSSSEVALPKAMNTSVPPEWWTRSHHHGDRTGAAAGRGDHIRG-ALLVAS
        +I L     NARELRPS+HGLE +  PG       S +M SFF     N  +S        + ++V     T S    D         D +    L+V S
Subjt:  VIFLAGGTSNARELRPSEHGLE-FQNPGSGAAEKSSPDMKSFF---RGNSWSSSEVALPKAMNTSVPPEWWTRSHHHGDRTGAAAGRGDHIRG-ALLVAS

Query:  LVCGIVGVSLLIASAFIYIFKFKKHRSS
        LVCG+ GV+L++ASA IY   + K ++S
Subjt:  LVCGIVGVSLLIASAFIYIFKFKKHRSS

AT4G21740.1 unknown protein6.7e-1236.73Show/hide
Query:  SLAVIFLAGGTSNARELRPSEHGLEFQNPGSGAAEKSSP-DMKSFFRGNSWSSS-----EVALPK--AMNTSVPPEWWTRSHHHGDRTGAAAGRGDHIRG
        ++  + +  G S A ELRPS+HGL++Q         S P  MKSFF G+S SSS        LPK  A +      WW        R GA   R   +R 
Subjt:  SLAVIFLAGGTSNARELRPSEHGLEFQNPGSGAAEKSSP-DMKSFFRGNSWSSS-----EVALPK--AMNTSVPPEWWTRSHHHGDRTGAAAGRGDHIRG

Query:  ALLVASLVCGIVGVSLLIASAFIYIFKFKKHRSSPSSLSLSDSTNIV
          L AS++CG+ GV+LL+    IY F+++KH  S S    +DS  I+
Subjt:  ALLVASLVCGIVGVSLLIASAFIYIFKFKKHRSSPSSLSLSDSTNIV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
TCGCAGATTGCGGCATTCACCGCCGTCTATTGCTCGCTGGCCGTCATTTTCCTCGCCGGAGGTACTTCGAATGCGCGGGAATTGCGTCCATCGGAGCACGGATTGGAGTT
CCAGAACCCTGGCAGTGGCGCTGCGGAGAAATCCTCGCCGGATATGAAGTCGTTCTTCCGAGGAAACTCCTGGTCCTCCTCCGAGGTCGCGCTTCCGAAGGCGATGAATA
CCAGCGTGCCGCCGGAGTGGTGGACTCGGAGCCATCACCACGGCGACCGCACTGGAGCCGCCGCCGGAAGAGGAGATCACATTCGCGGCGCATTGCTTGTGGCGAGCCTG
GTATGTGGAATTGTAGGCGTTTCTTTGCTGATTGCCTCTGCTTTTATCTATATCTTTAAATTCAAGAAGCACAGATCATCGCCGTCCTCGCTCTCACTCTCTGATTCTAC
TAACATTGTTATCAACAAG
mRNA sequenceShow/hide mRNA sequence
TCGCAGATTGCGGCATTCACCGCCGTCTATTGCTCGCTGGCCGTCATTTTCCTCGCCGGAGGTACTTCGAATGCGCGGGAATTGCGTCCATCGGAGCACGGATTGGAGTT
CCAGAACCCTGGCAGTGGCGCTGCGGAGAAATCCTCGCCGGATATGAAGTCGTTCTTCCGAGGAAACTCCTGGTCCTCCTCCGAGGTCGCGCTTCCGAAGGCGATGAATA
CCAGCGTGCCGCCGGAGTGGTGGACTCGGAGCCATCACCACGGCGACCGCACTGGAGCCGCCGCCGGAAGAGGAGATCACATTCGCGGCGCATTGCTTGTGGCGAGCCTG
GTATGTGGAATTGTAGGCGTTTCTTTGCTGATTGCCTCTGCTTTTATCTATATCTTTAAATTCAAGAAGCACAGATCATCGCCGTCCTCGCTCTCACTCTCTGATTCTAC
TAACATTGTTATCAACAAG
Protein sequenceShow/hide protein sequence
SQIAAFTAVYCSLAVIFLAGGTSNARELRPSEHGLEFQNPGSGAAEKSSPDMKSFFRGNSWSSSEVALPKAMNTSVPPEWWTRSHHHGDRTGAAAGRGDHIRGALLVASL
VCGIVGVSLLIASAFIYIFKFKKHRSSPSSLSLSDSTNIVINK